Project measure / variable:   Reed1   length

ID, description, units MPD:32604   length   body length (from base of lower incisors to base of anus)   [cm]  
Data set, strains Reed1   inbred   28 strains     sex: m     age: 29-67wks
Procedure body size and weight
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  STRAIN COMPARISON PLOT
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Reed1 - body length (from base of lower incisors to base of anus)



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested28 strains
Mean of the strain means8.76   cm
Median of the strain means8.75   cm
SD of the strain means± 0.509
Coefficient of variation (CV)0.0581
Min–max range of strain means7.62   –   9.49   cm
Mean sample size per strain11.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 27 80.9287 2.9974 22.2798 < 0.0001
Residuals 295 39.6871 0.1345


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129P3/J m 8.33 0.555   12 0.16 0.0666 7.4, 9.1 -0.85
A/J m 8.48 0.279   12 0.0806 0.0329 8.2, 9.0 -0.55
AKR/J m 9.43 0.245   11 0.074 0.026 9.0, 9.8 1.31
BALB/cByJ m 9.08 0.385   10 0.122 0.0424 8.5, 9.7 0.63
BUB/BnJ m 9.08 0.464   11 0.14 0.0511 8.5, 10.0 0.63
C3H/HeJ m 8.65 0.397   12 0.114 0.0458 8.1, 9.4 -0.22
C57BL/6J m 8.75 0.266   11 0.0802 0.0304 8.4, 9.2 -0.02
C57L/J m 9.04 0.394   12 0.114 0.0436 8.5, 9.9 0.55
CAST/EiJ m 7.62 0.319   11 0.0961 0.0418 7.1, 8.0 -2.24
CBA/J m 9.02 0.286   12 0.0824 0.0317 8.6, 9.4 0.51
CE/J m 9.36 0.332   12 0.0957 0.0354 8.6, 10.0 1.18
DBA/2J m 8.82 0.324   12 0.0936 0.0368 8.4, 9.3 0.12
FVB/NJ m 8.58 0.256   12 0.074 0.0299 8.1, 9.0 -0.36
I/LnJ m 8.76 0.338   11 0.102 0.0386 8.1, 9.1 0.0
KK/HlJ m 9.4 0.322   12 0.0929 0.0342 8.9, 10.0 1.25
LP/J m 8.73 0.431   12 0.125 0.0494 7.8, 9.3 -0.06
NOD/ShiLtJ m 8.95 0.381   10 0.12 0.0425 8.3, 9.6 0.37
NZB/BlNJ m 9.49 0.281   11 0.0847 0.0296 9.1, 10.1 1.43
P/J m 8.64 0.35   11 0.106 0.0405 8.1, 9.1 -0.24
PL/J m 8.41 0.318   11 0.0958 0.0378 8.0, 9.0 -0.69
RBF/DnJ m 9.27 0.456   11 0.138 0.0492 8.5, 9.8 1.0
RF/J m 9.48 0.536   12 0.155 0.0565 8.5, 10.3 1.41
RIIIS/J m 7.89 0.309   12 0.0892 0.0391 7.4, 8.5 -1.71
SEA/GnJ m 9.01 0.446   12 0.129 0.0495 8.2, 9.9 0.49
SJL/J m 8.42 0.292   12 0.0842 0.0347 7.8, 9.0 -0.67
SM/J m 8.49 0.385   12 0.111 0.0453 8.0, 9.1 -0.53
SPRET/EiJ m 7.64 0.348   12 0.1 0.0455 7.1, 8.2 -2.2
SWR/J m 8.49 0.326   12 0.0941 0.0384 7.7, 8.9 -0.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129P3/J m 8.3333 0.1059 8.5417 8.125
A/J m 8.4833 0.1059 8.6917 8.275
AKR/J m 9.4273 0.1106 9.6449 9.2096
BALB/cByJ m 9.08 0.116 9.3083 8.8517
BUB/BnJ m 9.0818 0.1106 9.2995 8.8642
C3H/HeJ m 8.65 0.1059 8.8584 8.4416
C57BL/6J m 8.7455 0.1106 8.9631 8.5278
C57L/J m 9.0417 0.1059 9.25 8.8333
CAST/EiJ m 7.6182 0.1106 7.8358 7.4005
CBA/J m 9.0167 0.1059 9.225 8.8083
CE/J m 9.3583 0.1059 9.5667 9.15
DBA/2J m 8.8167 0.1059 9.025 8.6083
FVB/NJ m 8.575 0.1059 8.7834 8.3666
I/LnJ m 8.7636 0.1106 8.9813 8.546
KK/HlJ m 9.4 0.1059 9.6084 9.1916
LP/J m 8.7333 0.1059 8.9417 8.525
NOD/ShiLtJ m 8.95 0.116 9.1783 8.7217
NZB/BlNJ m 9.4909 0.1106 9.7086 9.2733
P/J m 8.6364 0.1106 8.854 8.4187
PL/J m 8.4091 0.1106 8.6267 8.1914
RBF/DnJ m 9.2727 0.1106 9.4904 9.0551
RF/J m 9.4833 0.1059 9.6917 9.275
RIIIS/J m 7.8917 0.1059 8.1 7.6833
SEA/GnJ m 9.0083 0.1059 9.2167 8.8
SJL/J m 8.4167 0.1059 8.625 8.2083
SM/J m 8.4917 0.1059 8.7 8.2833
SPRET/EiJ m 7.6417 0.1059 7.85 7.4333
SWR/J m 8.4917 0.1059 8.7 8.2833




  GWAS USING LINEAR MIXED MODELS