Project measure / variable:   Schonfeld1   CE

ID, description, units MPD:32333   CE   cholesterol ester (plasma)   [mg/dL]  
Data set, strains Schonfeld1   inbred   10 strains     sex: both     age: 9-13wks
Procedure lipid profile
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  STRAIN COMPARISON PLOT
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Schonfeld1 - cholesterol ester (plasma)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains9 strains
Mean of the strain means129   mg/dL 137   mg/dL
Median of the strain means116   mg/dL 128   mg/dL
SD of the strain means± 46.6 ± 36.2
Coefficient of variation (CV)0.361 0.264
Min–max range of strain means89.6   –   239   mg/dL 95.5   –   212   mg/dL
Mean sample size per strain6.2   mice 5.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1062.9709 1062.9709 5.3273 0.0234
strain 8 123224.5358 15403.067 77.1951 < 0.0001
sex:strain 8 25853.9838 3231.748 16.1964 < 0.0001
Residuals 87 17359.488 199.5343


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129X1/SvJ f 144.0 13.9   10 4.39 0.0964 127.0, 170.0 0.32
129X1/SvJ m 162.0 14.7   5 6.58 0.0907 140.0, 176.0 0.69
AKR/J f 98.8 4.98   5 2.23 0.0504 90.2, 102.0 -0.65
BALB/cByJ f 129.0 24.2   10 7.65 0.188 104.0, 167.0 0.0
BALB/cByJ m 138.0 17.5   5 7.81 0.127 122.0, 164.0 0.02
C3H/HeJ f 239.0 14.3   5 6.41 0.0601 215.0, 249.0 2.36
C3H/HeJ m 161.0 7.99   5 3.57 0.0497 147.0, 168.0 0.66
C57BL/6ByJ f 89.6 10.8   5 4.85 0.121 74.1, 102.0 -0.85
C57BL/6ByJ m 95.5 8.83   5 3.95 0.0925 82.2, 106.0 -1.15
C57BL/6J f 104.0 15.0   10 4.73 0.144 64.2, 117.0 -0.54
C57BL/6J m 128.0 5.1   5 2.28 0.0398 120.0, 134.0 -0.25
DBA/1LacJ f 89.6 6.01   5 2.69 0.067 82.8, 95.5 -0.85
DBA/1LacJ m 106.0 6.24   5 2.79 0.0587 97.5, 114.0 -0.86
NZB/BlNJ f 168.0 21.0   5 9.41 0.125 135.0, 184.0 0.83
NZB/BlNJ m 212.0 8.09   5 3.62 0.0382 201.0, 220.0 2.07
PL/J f 133.0 6.8   5 3.04 0.051 126.0, 142.0 0.08
PL/J m 112.0 6.26   5 2.8 0.0558 106.0, 119.0 -0.69
SWR/J f 96.9 18.1   5 8.09 0.187 66.1, 112.0 -0.69
SWR/J m 120.0 8.84   5 3.95 0.0736 108.0, 133.0 -0.47


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ f 144.0 4.4669 152.8785 135.1215
129X1/SvJ m 162.2 6.3172 174.7561 149.6439
BALB/cByJ f 129.0 4.4669 137.8785 120.1215
BALB/cByJ m 137.6 6.3172 150.1561 125.0439
C3H/HeJ f 238.6 6.3172 251.1561 226.0439
C3H/HeJ m 160.6 6.3172 173.1561 148.0439
C57BL/6ByJ f 89.6 6.3172 102.1561 77.0439
C57BL/6ByJ m 95.5 6.3172 108.0561 82.9439
C57BL/6J f 103.64 4.4669 112.5185 94.7615
C57BL/6J m 128.0 6.3172 140.5561 115.4439
DBA/1LacJ f 89.64 6.3172 102.1961 77.0839
DBA/1LacJ m 106.3 6.3172 118.8561 93.7439
NZB/BlNJ f 167.6 6.3172 180.1561 155.0439
NZB/BlNJ m 212.0 6.3172 224.5561 199.4439
PL/J f 133.4 6.3172 145.9561 120.8439
PL/J m 112.2 6.3172 124.7561 99.6439
SWR/J f 96.86 6.3172 109.4161 84.3039
SWR/J m 120.2 6.3172 132.7561 107.6439


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129X1/SvJ both 153.1 3.8685 160.789 145.411
BALB/cByJ both 133.3 3.8685 140.989 125.611
C3H/HeJ both 199.6 4.4669 208.4785 190.7215
C57BL/6ByJ both 92.55 4.4669 101.4285 83.6715
C57BL/6J both 115.82 3.8685 123.509 108.131
DBA/1LacJ both 97.97 4.4669 106.8485 89.0915
NZB/BlNJ both 189.8 4.4669 198.6785 180.9215
PL/J both 122.8 4.4669 131.6785 113.9215
SWR/J both 108.53 4.4669 117.4085 99.6515




  GWAS USING LINEAR MIXED MODELS