Phenotype measure:   CGDpheno1   CHOL

ID, description, units MPD:31841   CHOL   total cholesterol (plasma CHOL)   [mg/dL]
Data set, strains CGDpheno1   inbred w/CC8   72 strains     sex: both     age: 12wks
Procedure lipid profile
Ontology mappings

  STRAIN COMPARISON PLOT
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CGDpheno1 - total cholesterol (plasma CHOL)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested71 strains72 strains
Mean of the strain means99.1   mg/dL 118   mg/dL
Median of the strain means92.5   mg/dL 106   mg/dL
SD of the strain means± 32.1 ± 39.0
Coefficient of variation (CV)0.324 0.329
Min–max range of strain means49.2   –   217   mg/dL 64.3   –   289   mg/dL
Mean sample size per strain7.3   mice 6.9   mice


  STRAIN MEANS (SUBMITTER-ADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 106.0 20.9   8 7.39 0.197 0.22
129S1/SvImJ m 146.0 20.2   6 8.23 0.138 0.71
A/J f 62.1 20.4   6 8.33 0.329 -1.15
A/J m 77.9 20.5   7 7.75 0.263 -1.04
AKR/J f 71.9 20.2   8 7.16 0.282 -0.85
AKR/J m 86.1 20.4   6 8.33 0.237 -0.83
ALR/LtJ f 62.3 20.3   7 7.67 0.326 -1.15
ALR/LtJ m 99.2 20.6   8 7.29 0.208 -0.49
ALS/LtJ f 88.3 19.5   8 6.88 0.22 -0.34
ALS/LtJ m 106.0 19.2   7 7.27 0.181 -0.32
BALB/cByJ f 63.2 20.8   7 7.87 0.329 -1.12
BALB/cByJ m 96.6 20.8   7 7.87 0.215 -0.56
BPH/2J f 77.2 20.2   8 7.15 0.262 -0.68
BPH/2J m 110.0 18.8   7 7.1 0.171 -0.22
BPL/1J f 104.0 19.3   8 6.84 0.186 0.15
BPL/1J m 126.0 18.6   6 7.57 0.147 0.19
BPN/3J f 145.0 18.5   5 8.26 0.127 1.43
BPN/3J m 151.0 19.1   8 6.77 0.127 0.83
BTBR T+ Itpr3tf/J f 92.3 21.3   8 7.54 0.231 -0.21
BTBR T+ Itpr3tf/J m 117.0 20.5   6 8.37 0.176 -0.04
BUB/BnJ f 62.2 21.1   9 7.02 0.339 -1.15
BUB/BnJ m 92.9 19.7   4 9.83 0.212 -0.66
C3H/HeJ f 89.8 20.9   8 7.37 0.232 -0.29
C3H/HeJ m 122.0 20.5   8 7.26 0.168 0.09
C57BL/6J f 77.4 20.6   111 1.96 0.267 -0.68
C57BL/6J m 94.6 20.4   100 2.04 0.215 -0.61
C57BR/cdJ f 77.1 18.9   8 6.69 0.245 -0.68
C57BR/cdJ m 101.0 18.9   8 6.69 0.187 -0.45
C57L/J f 71.6 21.1   8 7.45 0.295 -0.86
C57L/J m 78.7 19.9   5 8.91 0.253 -1.02
C58/J f 102.0 21.3   8 7.54 0.21 0.09
C58/J m 103.0 20.9   7 7.91 0.203 -0.4
CALB/RkJ m 85.4 18.6   5 8.3 0.217 -0.85
CAST/EiJ f 103.0 18.7   5 8.36 0.182 0.12
CAST/EiJ m 65.5 18.6   5 8.34 0.285 -1.36
CBA/CaJ f 135.0 20.9   8 7.38 0.155 1.12
CBA/CaJ m 146.0 19.7   8 6.95 0.134 0.71
CE/J f 72.2 19.8   7 7.47 0.274 -0.84
CE/J m 93.2 19.1   8 6.75 0.205 -0.65
CZECHI/EiJ f 101.0 19.2   7 7.27 0.191 0.06
CZECHI/EiJ m 100.0 19.0   6 7.77 0.19 -0.47
CZECHII/EiJ f 78.8 18.8   7 7.12 0.239 -0.63
CZECHII/EiJ m 83.0 18.7   6 7.62 0.225 -0.91
DBA/1J f 59.3 20.9   8 7.38 0.352 -1.24
DBA/1J m 92.0 19.6   8 6.93 0.213 -0.68
DBA/2J f 85.7 19.9   7 7.54 0.233 -0.42
DBA/2J m 106.0 20.6   9 6.88 0.195 -0.32
DDY/JclSidSeyFrkJ f 114.0 19.0   8 6.71 0.166 0.46
DDY/JclSidSeyFrkJ m 141.0 19.0   7 7.17 0.134 0.58
EL/SuzSeyFrkJ f 102.0 19.8   7 7.5 0.194 0.09
EL/SuzSeyFrkJ m 99.3 19.8   7 7.5 0.2 -0.49
FVB/NJ f 124.0 20.5   10 6.47 0.165 0.78
FVB/NJ m 166.0 20.9   8 7.39 0.126 1.22
I/LnJ f 51.3 20.1   6 8.19 0.391 -1.49
I/LnJ m 72.4 19.0   5 8.51 0.263 -1.18
JF1/MsJ f 92.5 19.0   8 6.72 0.206 -0.2
JF1/MsJ m 93.9 18.9   7 7.16 0.202 -0.63
KK/HlJ f 166.0 18.8   7 7.12 0.113 2.09
KK/HlJ m 184.0 18.9   7 7.16 0.103 1.68
LEWES/EiJ f 124.0 18.7   6 7.63 0.151 0.78
LEWES/EiJ m 137.0 18.6   5 8.33 0.136 0.47
LG/J f 161.0 20.5   7 7.76 0.127 1.93
LG/J m 165.0 19.4   8 6.85 0.117 1.19
LP/J f 88.5 20.3   8 7.19 0.23 -0.33
LP/J m 91.9 19.4   8 6.85 0.211 -0.68
LT/SvEiJ f 73.7 19.7   8 6.95 0.267 -0.79
LT/SvEiJ m 75.2 19.7   8 6.95 0.262 -1.11
MA/MyJ f 89.7 20.0   8 7.08 0.223 -0.29
MA/MyJ m 138.0 20.0   8 7.08 0.145 0.5
MOLF/EiJ f 70.3 18.8   7 7.09 0.267 -0.9
MOLF/EiJ m 80.3 18.9   6 7.71 0.235 -0.98
MRL/MpJ f 120.0 20.0   7 7.57 0.167 0.65
MRL/MpJ m 168.0 19.1   3 11.0 0.114 1.27
MSM/MsJ f 115.0 19.1   7 7.22 0.165 0.5
MSM/MsJ m 101.0 19.0   5 8.48 0.188 -0.45
NH/KiPtJ f 140.0 18.9   8 6.69 0.135 1.28
NH/KiPtJ m 129.0 18.8   7 7.11 0.145 0.27
NOD/ShiLtJ f 90.0 20.1   6 8.22 0.224 -0.28
NOD/ShiLtJ m 107.0 19.9   7 7.51 0.186 -0.29
NON/ShiLtJ f 105.0 19.0   7 7.17 0.182 0.18
NON/ShiLtJ m 161.0 20.1   8 7.1 0.125 1.09
NOR/LtJ f 49.2 20.9   8 7.39 0.425 -1.55
NOR/LtJ m 146.0 18.4   2   13.0 0.126 0.71
NZB/BlNJ f 131.0 21.3   8 7.54 0.163 0.99
NZB/BlNJ m 194.0 19.9   8 7.02 0.102 1.94
NZL/LtJ f 143.0 19.0   8 6.72 0.133 1.37
NZL/LtJ m 186.0 19.1   8 6.76 0.103 1.73
NZM2410/J f 136.0 19.6   7 7.41 0.144 1.15
NZM2410/J m 114.0 19.5   8 6.88 0.17 -0.12
NZO/HlLtJ f 167.0 18.9   7 7.13 0.113 2.12
NZO/HlLtJ m 234.0 18.8   8 6.65 0.0803 2.96
NZW/LacJ f 154.0 20.9   8 7.38 0.136 1.71
NZW/LacJ m 148.0 20.3   8 7.16 0.137 0.76
PANCEVO/EiJ f 87.7 18.6   4 9.32 0.213 -0.35
PANCEVO/EiJ m 89.3 18.7   6 7.62 0.209 -0.75
PERA/EiJ f 108.0 18.9   7 7.13 0.175 0.28
PERA/EiJ m 88.8 18.7   6 7.62 0.21 -0.76
PERC/EiJ f 114.0 19.0   6 7.76 0.167 0.46
PERC/EiJ m 112.0 18.9   8 6.67 0.169 -0.17
P/J f 99.3 19.4   7 7.32 0.195 0.01
P/J m 135.0 19.5   6 7.96 0.145 0.42
PL/J f 99.0 20.6   8 7.29 0.208 0.0
PL/J m 113.0 19.8   5 8.85 0.175 -0.14
PN/nBSwUmabJ f 66.9 19.1   7 7.23 0.286 -1.0
PN/nBSwUmabJ m 88.8 19.1   6 7.81 0.215 -0.76
PWD/PhJ f 73.0 19.9   6 8.14 0.273 -0.81
PWD/PhJ m 97.4 20.6   8 7.29 0.212 -0.54
PWK/PhJ f 96.8 20.9   8 7.38 0.216 -0.07
PWK/PhJ m 84.3 20.5   7 7.76 0.243 -0.88
RBA/DnJ f 126.0 18.8   7 7.11 0.149 0.84
RBA/DnJ m 135.0 19.0   8 6.71 0.141 0.42
RBF/DnJ f 217.0 20.5   8 7.23 0.0942 3.67
RBF/DnJ m 289.0 20.0   7 7.57 0.0693 4.37
RF/J f 94.6 19.0   6 7.77 0.201 -0.14
RF/J m 125.0 18.7   8 6.61 0.15 0.17
RIIIS/J f 60.1 18.7   8 6.61 0.311 -1.21
RIIIS/J m 64.3 18.7   8 6.61 0.291 -1.39
SB/LeJ f 91.1 18.7   8 6.6 0.205 -0.25
SB/LeJ m 103.0 18.5   7 7.0 0.179 -0.4
SEA/GnJ f 69.0 19.0   8 6.73 0.276 -0.94
SEA/GnJ m 89.3 19.1   9 6.35 0.213 -0.75
SF/CamEiJ f 125.0 21.2   8 7.49 0.169 0.81
SF/CamEiJ m 143.0 19.2   7 7.26 0.134 0.63
SJL/J f 60.7 21.1   8 7.45 0.347 -1.2
SJL/J m 86.3 19.5   4 9.76 0.226 -0.83
SKIVE/EiJ f 90.4 18.8   7 7.1 0.208 -0.27
SKIVE/EiJ m 106.0 19.0   8 6.73 0.18 -0.32
SM/J f 58.6 21.3   8 7.54 0.364 -1.26
SM/J m 98.1 19.9   6 8.14 0.203 -0.52
SOD1/EiJ f 99.0 20.4   8 7.21 0.206 0.0
SOD1/EiJ m 105.0 19.6   8 6.92 0.186 -0.35
SPRET/EiJ f 131.0 19.1   8 6.76 0.146 0.99
SPRET/EiJ m 109.0 19.2   8 6.8 0.176 -0.24
SWR/J f 64.8 19.7   7 7.44 0.304 -1.07
SWR/J m 114.0 20.6   9 6.88 0.18 -0.12
TALLYHO/JngJ f 98.3 19.3   6 7.9 0.197 -0.02
TALLYHO/JngJ m 158.0 19.4   7 7.34 0.122 1.01
TIRANO/EiJ f 89.0 18.5   5 8.27 0.208 -0.31
TIRANO/EiJ m 110.0 18.7   6 7.62 0.17 -0.22
WSB/EiJ f 90.6 18.7   5 8.36 0.206 -0.26
WSB/EiJ m 115.0 18.6   6 7.6 0.162 -0.09
ZALENDE/EiJ f 130.0 19.2   7 7.25 0.148 0.96
ZALENDE/EiJ m 162.0 18.9   5 8.46 0.117 1.12




  GWAS USING LINEAR MIXED MODELS