Project measure / variable:   Vinyard1   bw

ID, description, units MPD:30408   bw   body weight   [g]  
Data set, strains Vinyard1   inbred   21 strains     sex: both     age: 9-12wks
Procedure body weight
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  STRAIN COMPARISON PLOT
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Vinyard1 - body weight



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested21 strains21 strains
Mean of the strain means19.0   g 23.6   g
Median of the strain means18.5   g 22.6   g
SD of the strain means± 3.03 ± 3.75
Coefficient of variation (CV)0.160 0.159
Min–max range of strain means12.3   –   26.4   g 14.1   –   29.5   g
Mean sample size per strain9.9   mice 9.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2215.7174 2215.7174 822.5063 < 0.0001
strain 20 4315.9399 215.797 80.107 < 0.0001
sex:strain 20 295.3329 14.7666 5.4816 < 0.0001
Residuals 373 1004.8101 2.6939


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 16.7 0.992   10 0.314 0.0594 15.0, 18.2 -0.75
129S1/SvImJ m 22.6 1.77   10 0.56 0.0782 20.0, 26.4 -0.27
A/J f 18.5 1.15   10 0.363 0.0622 17.1, 21.2 -0.15
A/J m 21.4 1.4   10 0.443 0.0653 19.4, 23.5 -0.59
AKR/J f 24.1 2.09   10 0.66 0.0866 20.9, 26.8 1.7
AKR/J m 27.7 2.03   10 0.643 0.0734 25.2, 31.8 1.1
BALB/cByJ f 19.9 0.964   10 0.305 0.0484 18.6, 21.7 0.31
BALB/cByJ m 26.3 1.24   10 0.393 0.0473 24.5, 28.3 0.72
BTBR T+ Itpr3tf/J f 26.4 2.68   10 0.849 0.102 22.1, 30.0 2.46
BTBR T+ Itpr3tf/J m 29.5 1.48   10 0.468 0.0501 26.8, 31.5 1.58
C3H/HeJ f 18.7 1.49   10 0.472 0.0799 16.5, 20.6 -0.08
C3H/HeJ m 22.2 1.16   10 0.366 0.052 20.6, 23.8 -0.37
C57BL/10J f 18.5 1.25   10 0.396 0.0677 16.9, 20.7 -0.15
C57BL/10J m 24.6 0.882   10 0.279 0.0359 22.6, 25.3 0.27
C57BL/6J f 18.2 1.45   10 0.459 0.0797 14.9, 19.7 -0.25
C57BL/6J m 24.9 1.43   10 0.452 0.0573 22.5, 26.5 0.35
C57BLKS/J f 18.2 1.1   10 0.348 0.0605 16.3, 20.1 -0.25
C57BLKS/J m 21.0 2.03   10 0.641 0.0965 17.9, 24.1 -0.69
C57L/J f 17.6 1.45   10 0.459 0.0826 15.9, 20.0 -0.45
C57L/J m 21.8 1.17   10 0.371 0.0539 20.0, 23.8 -0.48
C58/J f 17.5 1.64   8 0.58 0.0937 15.9, 20.3 -0.48
C58/J m 22.3 1.44   8 0.508 0.0646 20.1, 23.7 -0.35
CAST/EiJ f 12.3 0.678   10 0.214 0.055 11.7, 13.7 -2.2
CAST/EiJ m 14.1 1.13   10 0.359 0.0803 12.3, 15.2 -2.54
CBA/J f 21.0 1.83   10 0.58 0.0873 18.7, 24.0 0.67
CBA/J m 27.7 1.78   10 0.563 0.0642 24.8, 30.2 1.1
DBA/2J f 18.1 2.04   10 0.644 0.112 15.7, 20.6 -0.28
DBA/2J m 21.8 2.64   10 0.836 0.121 16.6, 25.2 -0.48
FVB/NJ f 19.7 1.69   10 0.533 0.0858 17.3, 22.6 0.25
FVB/NJ m 27.1 1.36   10 0.431 0.0503 24.7, 29.8 0.94
NOD/ShiLtJ f 19.6 1.14   10 0.359 0.0579 17.6, 21.5 0.21
NOD/ShiLtJ m 27.4 1.37   10 0.432 0.0498 25.2, 29.6 1.02
NON/ShiLtJ f 23.0 2.31   11 0.697 0.1 18.2, 26.0 1.34
NON/ShiLtJ m 28.5 2.66   10 0.843 0.0936 24.0, 31.8 1.31
NZB/BlNJ f 20.6 1.43   10 0.453 0.0694 18.5, 22.9 0.54
NZB/BlNJ m 23.8 2.64   10 0.833 0.111 19.2, 26.8 0.05
PL/J f 16.3 1.28   10 0.406 0.0787 14.7, 18.3 -0.88
PL/J m 19.4 1.61   9 0.537 0.0832 16.6, 21.2 -1.12
RIIIS/J f 15.5 1.4   9 0.466 0.0899 13.2, 17.5 -1.14
RIIIS/J m 19.3 2.13   10 0.673 0.11 16.5, 23.0 -1.15
SJL/J f 17.7 1.03   10 0.324 0.058 16.4, 20.1 -0.42
SJL/J m 22.1 0.868   10 0.274 0.0392 20.4, 23.1 -0.4


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 16.69 0.519 17.7106 15.6694
129S1/SvImJ m 22.64 0.519 23.6606 21.6194
A/J f 18.47 0.519 19.4906 17.4494
A/J m 21.44 0.519 22.4606 20.4194
AKR/J f 24.09 0.519 25.1106 23.0694
AKR/J m 27.7 0.519 28.7206 26.6794
BALB/cByJ f 19.9 0.519 20.9206 18.8794
BALB/cByJ m 26.27 0.519 27.2906 25.2494
BTBR T+ Itpr3tf/J f 26.4 0.519 27.4206 25.3794
BTBR T+ Itpr3tf/J m 29.52 0.519 30.5406 28.4994
C3H/HeJ f 18.67 0.519 19.6906 17.6494
C3H/HeJ m 22.24 0.519 23.2606 21.2194
C57BL/10J f 18.5 0.519 19.5206 17.4794
C57BL/10J m 24.59 0.519 25.6106 23.5694
C57BL/6J f 18.23 0.519 19.2506 17.2094
C57BL/6J m 24.93 0.519 25.9506 23.9094
C57BLKS/J f 18.21 0.519 19.2306 17.1894
C57BLKS/J m 21.02 0.519 22.0406 19.9994
C57L/J f 17.55 0.519 18.5706 16.5294
C57L/J m 21.78 0.519 22.8006 20.7594
C58/J f 17.5125 0.5803 18.6535 16.3715
C58/J m 22.2625 0.5803 23.4035 21.1215
CAST/EiJ f 12.32 0.519 13.3406 11.2994
CAST/EiJ m 14.12 0.519 15.1406 13.0994
CBA/J f 21.0 0.519 22.0206 19.9794
CBA/J m 27.74 0.519 28.7606 26.7194
DBA/2J f 18.14 0.519 19.1606 17.1194
DBA/2J m 21.78 0.519 22.8006 20.7594
FVB/NJ f 19.66 0.519 20.6806 18.6394
FVB/NJ m 27.08 0.519 28.1006 26.0594
NOD/ShiLtJ f 19.62 0.519 20.6406 18.5994
NOD/ShiLtJ m 27.41 0.519 28.4306 26.3894
NON/ShiLtJ f 23.0182 0.4949 23.9913 22.0451
NON/ShiLtJ m 28.46 0.519 29.4806 27.4394
NZB/BlNJ f 20.65 0.519 21.6706 19.6294
NZB/BlNJ m 23.8 0.519 24.8206 22.7794
PL/J f 16.3 0.519 17.3206 15.2794
PL/J m 19.3667 0.5471 20.4425 18.2909
RIIIS/J f 15.5444 0.5471 16.6202 14.4687
RIIIS/J m 19.28 0.519 20.3006 18.2594
SJL/J f 17.68 0.519 18.7006 16.6594
SJL/J m 22.12 0.519 23.1406 21.0994


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 19.665 0.367 20.3867 18.9433
A/J both 19.955 0.367 20.6767 19.2333
AKR/J both 25.895 0.367 26.6167 25.1733
BALB/cByJ both 23.085 0.367 23.8067 22.3633
BTBR T+ Itpr3tf/J both 27.96 0.367 28.6817 27.2383
C3H/HeJ both 20.455 0.367 21.1767 19.7333
C57BL/10J both 21.545 0.367 22.2667 20.8233
C57BL/6J both 21.58 0.367 22.3017 20.8583
C57BLKS/J both 19.615 0.367 20.3367 18.8933
C57L/J both 19.665 0.367 20.3867 18.9433
C58/J both 19.8875 0.4103 20.6943 19.0807
CAST/EiJ both 13.22 0.367 13.9417 12.4983
CBA/J both 24.37 0.367 25.0917 23.6483
DBA/2J both 19.96 0.367 20.6817 19.2383
FVB/NJ both 23.37 0.367 24.0917 22.6483
NOD/ShiLtJ both 23.515 0.367 24.2367 22.7933
NON/ShiLtJ both 25.7391 0.3586 26.4442 25.034
NZB/BlNJ both 22.225 0.367 22.9467 21.5033
PL/J both 17.8333 0.3771 18.5748 17.0919
RIIIS/J both 17.4122 0.3771 18.1537 16.6708
SJL/J both 19.9 0.367 20.6217 19.1783




  GWAS USING LINEAR MIXED MODELS