Project measure / variable:   Paigen1   finalbw

ID, description, units MPD:2906   finalbw   body weight   [g]  after 8wks on diet  
high-fat diet study
Data set, strains Paigen1   inbred   43 strains     sex: both     age: 7-11wks
Procedure body weight
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  STRAIN COMPARISON PLOT
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Paigen1 - body weight after 8wks on diet

AKR/JRF/JNON/ShiLtJKK/HlJNZW/LacJBTBR T<+> Itpr3<tf>/JRBF/DnJNZB/BlNJDBA/2JBALB/cJLP/JCBA/JBPN/3JNOD/ShiLtJSEA/GnJCE/JC57L/JFVB/NJC57BL/10JC3H/HeJ129S1/SvImJSJL/JC57BR/cdJDBA/1JI/LnJP/JSWR/JBPL/1JC58/JC57BL/6JRIIIS/JPL/JC57BLKS/JBPH/2JYBR/EiJA/JSM/JPERA/EiJCAST/EiJMOLF/EiJSPRET/EiJWSB/EiJCZECHII/EiJ g 1015202530354045femalemale


  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested43 strains42 strains
Mean of the strain means23.3   g 27.3   g
Median of the strain means23.1   g 27.9   g
SD of the strain means± 5.43 ± 6.28
Coefficient of variation (CV)0.233 0.230
Min–max range of strain means11.7   –   35.2   g 13.9   –   37.8   g
Mean sample size per strain9.7   mice 9.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3645.6908 3645.6908 757.9079 < 0.0001
strain 41 23011.2134 561.2491 116.6789 < 0.0001
sex:strain 41 2004.8932 48.8998 10.1659 < 0.0001
Residuals 724 3482.587 4.8102


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page: 1 - 10 / 85 (85)
Strain
Sex
Mean
SD
N mice
SEM
CV
Min, Max
Z score
129S1/SvImJ f 23.1 1.52   10 0.48 0.0657 21.0, 25.7 -0.04
129S1/SvImJ m 28.8 1.1   10 0.347 0.0382 26.9, 30.7 0.24
A/J f 20.5 3.02   10 0.954 0.147 13.3, 23.5 -0.52
A/J m 22.5 1.93   10 0.612 0.0861 19.5, 26.1 -0.77
AKR/J f 33.0 3.89   10 1.23 0.118 26.7, 41.0 1.78
AKR/J m 37.8 4.68   10 1.48 0.124 27.4, 43.8 1.67
BALB/cJ f 26.2 1.04   10 0.33 0.0399 25.0, 28.1 0.53
BALB/cJ m 32.0 3.46   10 1.09 0.108 27.8, 39.8 0.74
BPH/2J f 21.5 1.27   10 0.4 0.0589 19.0, 23.6 -0.33
BPH/2J m 23.5 1.65   9 0.549 0.0702 20.5, 25.5 -0.61
BPL/1J f 26.3 1.99   10 0.628 0.0755 22.5, 28.4 0.55
BPL/1J m 21.1 1.22   10 0.384 0.0576 19.5, 23.4 -0.99
BPN/3J f 23.7 2.14   10 0.676 0.0903 20.8, 28.4 0.07
BPN/3J m 32.6 3.07   9 1.02 0.0942 27.4, 38.3 0.84
BTBR T+ Itpr3tf/J f 29.8 3.09   9 1.03 0.104 26.4, 36.0 1.19
BTBR T+ Itpr3tf/J m 35.0 1.94   16 0.486 0.0556 32.1, 38.5 1.22
C3H/HeJ f 23.7 2.52   10 0.796 0.106 20.7, 28.4 0.07
C3H/HeJ m 28.8 3.51   10 1.11 0.122 24.9, 34.5 0.24
C57BL/10J f 22.7 0.985   10 0.311 0.0434 21.5, 24.4 -0.11
C57BL/10J m 30.0 2.11   10 0.669 0.0706 26.9, 34.5 0.43
C57BL/6J f 21.5 1.22   19 0.28 0.0568 19.6, 24.7 -0.33
C57BL/6J m 25.2 1.47   15 0.38 0.0584 23.2, 28.7 -0.34
C57BLKS/J f 20.6 1.0   27 0.193 0.0487 18.7, 22.1 -0.5
C57BLKS/J m 24.7 1.26   17 0.306 0.051 22.2, 26.6 -0.42
C57BR/cdJ f 20.0 1.04   10 0.329 0.0521 18.4, 21.5 -0.61
C57BR/cdJ m 29.3 1.81   10 0.573 0.0619 26.8, 32.2 0.31
C57L/J f 23.7 1.61   10 0.508 0.0678 20.3, 25.4 0.07
C57L/J m 29.5 1.72   10 0.544 0.0584 26.0, 32.2 0.35
C58/J f 21.4 1.76   10 0.556 0.082 18.3, 24.4 -0.35
C58/J m 25.7 1.68   10 0.53 0.0651 22.4, 27.8 -0.26
CAST/EiJ f 13.9 1.46   9 0.488 0.105 11.9, 16.1 -1.73
CAST/EiJ m 16.1 0.84   9 0.28 0.0523 14.7, 17.4 -1.79
CBA/J f 24.0 2.19   10 0.692 0.0914 19.8, 27.1 0.13
CBA/J m 32.4 2.42   10 0.766 0.0748 28.4, 35.7 0.81
CE/J f 27.5 2.98   10 0.941 0.108 23.8, 32.5 0.77
CE/J m 25.9 3.81   7 1.44 0.147 20.4, 31.0 -0.23
CZECHII/EiJ f 11.9 0.996   7 0.376 0.0836 10.6, 13.6 -2.1
CZECHII/EiJ m 13.9 2.48   7 0.936 0.178 10.4, 18.0 -2.14
DBA/1J f 23.7 2.3   10 0.727 0.0969 20.8, 28.4 0.07
DBA/1J m 25.0 2.36   9 0.787 0.0943 22.1, 28.7 -0.37
DBA/2J f 26.6 3.0   10 0.948 0.113 20.6, 30.5 0.6
DBA/2J m 34.9 3.51   9 1.17 0.101 30.1, 41.1 1.21
FVB/NJ f 24.2 1.35   10 0.427 0.0557 22.2, 26.7 0.16
FVB/NJ m 28.6 2.26   3 1.31 0.0792 26.5, 31.0 0.2
I/LnJ f 22.4 0.835   10 0.264 0.0372 21.5, 23.9 -0.17
I/LnJ m 26.1 2.43   10 0.769 0.0931 23.0, 30.2 -0.19
KK/HlJ f 35.2 2.84   9 0.948 0.0807 32.5, 41.6 2.19
KK/HlJ m 30.8 5.18   9 1.73 0.168 19.1, 37.6 0.55
LP/J f 23.4 1.82   10 0.574 0.0777 20.3, 26.2 0.01
LP/J m 33.2 2.72   10 0.86 0.0818 30.2, 40.0 0.94
MOLF/EiJ f 14.0 1.04   6 0.425 0.0741 12.0, 14.9 -1.71
MOLF/EiJ m 15.2 0.603   10 0.191 0.0396 14.4, 16.4 -1.93
NOD/ShiLtJ f 26.1 4.09   10 1.29 0.156 15.8, 30.2 0.51
NOD/ShiLtJ m 30.1 1.87   7 0.708 0.0623 27.4, 32.3 0.44
NON/ShiLtJ f 30.9 1.53   10 0.483 0.0495 27.9, 33.4 1.4
NON/ShiLtJ m 35.2 2.01   10 0.635 0.0571 32.3, 38.0 1.25
NZB/BlNJ f 27.7 2.85   10 0.903 0.103 23.2, 33.7 0.81
NZB/BlNJ m 35.2 2.13   9 0.71 0.0605 31.4, 38.0 1.25
NZW/LacJ f 29.9 1.87   8 0.661 0.0625 27.0, 32.6 1.21
NZW/LacJ m 35.7 2.82   10 0.89 0.0789 31.8, 40.0 1.33
PERA/EiJ f 20.3 1.63   8 0.578 0.0807 18.1, 22.6 -0.56
PERA/EiJ m 21.3 1.09   4 0.543 0.051 19.9, 22.3 -0.96
P/J f 21.6 1.66   10 0.526 0.0772 18.9, 24.3 -0.32
P/J m 26.8 2.3   10 0.726 0.0855 22.6, 30.3 -0.08
PL/J f 20.8 1.37   10 0.434 0.0658 18.4, 23.1 -0.46
PL/J m 25.0 1.32   3 0.764 0.0529 23.5, 26.0 -0.37
RBF/DnJ f 29.9 2.59   10 0.82 0.0869 26.4, 34.4 1.21
RBF/DnJ m 33.8 2.01   9 0.672 0.0596 31.1, 36.4 1.03
RF/J f 34.1 1.92   10 0.606 0.0562 32.4, 39.1 1.98
RF/J m 35.2 2.52   6 1.03 0.0716 31.7, 38.9 1.25
RIIIS/J f 19.7 2.3   10 0.728 0.117 15.6, 22.8 -0.67
RIIIS/J m 26.5 2.39   9 0.797 0.0904 23.8, 30.2 -0.13
SEA/GnJ f 26.3 1.64   9 0.547 0.0623 24.1, 29.4 0.55
SEA/GnJ m 28.2 2.22   10 0.701 0.0786 25.2, 31.0 0.14
SJL/J f 22.2 1.51   10 0.476 0.0678 20.3, 25.3 -0.21
SJL/J m 27.5 1.23   9 0.411 0.0448 25.5, 29.9 0.03
SM/J f 18.2 0.894   8 0.316 0.0492 16.7, 19.2 -0.94
SM/J m 24.1 1.52   6 0.62 0.063 21.9, 26.5 -0.51
SPRET/EiJ f 14.4 1.49   7 0.563 0.104 12.8, 16.3 -1.64
SPRET/EiJ m 14.6 0.808   5 0.361 0.0552 13.6, 15.5 -2.03
SWR/J f 22.6 1.07   10 0.34 0.0476 20.9, 23.8 -0.13
SWR/J m 25.5 2.36   8 0.835 0.0925 22.6, 30.1 -0.29
WSB/EiJ f 11.7 1.2   9 0.399 0.102 9.32, 13.2 -2.14
WSB/EiJ m 14.3 1.48   9 0.492 0.103 12.6, 16.8 -2.07
YBR/EiJ f 21.8 3.08   5 1.38 0.141 17.6, 25.6 -0.28


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 23.11 0.6936 24.4716 21.7484
129S1/SvImJ m 28.77 0.6936 30.1316 27.4084
A/J f 20.54 0.6936 21.9016 19.1784
A/J m 22.46 0.6936 23.8216 21.0984
AKR/J f 32.97 0.6936 34.3316 31.6084
AKR/J m 37.8 0.6936 39.1616 36.4384
BALB/cJ f 26.18 0.6936 27.5416 24.8184
BALB/cJ m 31.99 0.6936 33.3516 30.6284
BPH/2J f 21.49 0.6936 22.8516 20.1284
BPH/2J m 23.4778 0.7311 24.9131 22.0425
BPL/1J f 26.29 0.6936 27.6516 24.9284
BPL/1J m 21.12 0.6936 22.4816 19.7584
BPN/3J f 23.68 0.6936 25.0416 22.3184
BPN/3J m 32.5778 0.7311 34.0131 31.1425
BTBR T+ Itpr3tf/J f 29.7667 0.7311 31.2019 28.3314
BTBR T+ Itpr3tf/J m 34.9687 0.5483 36.0452 33.8923
C3H/HeJ f 23.74 0.6936 25.1016 22.3784
C3H/HeJ m 28.81 0.6936 30.1716 27.4484
C57BL/10J f 22.66 0.6936 24.0216 21.2984
C57BL/10J m 29.96 0.6936 31.3216 28.5984
C57BL/6J f 21.5 0.5032 22.4878 20.5122
C57BL/6J m 25.1867 0.5663 26.2984 24.0749
C57BLKS/J f 20.6222 0.4221 21.4509 19.7936
C57BLKS/J m 24.7353 0.5319 25.7796 23.691
C57BR/cdJ f 20.0 0.6936 21.3616 18.6384
C57BR/cdJ m 29.28 0.6936 30.6416 27.9184
C57L/J f 23.68 0.6936 25.0416 22.3184
C57L/J m 29.48 0.6936 30.8416 28.1184
C58/J f 21.44 0.6936 22.8016 20.0784
C58/J m 25.74 0.6936 27.1016 24.3784
CAST/EiJ f 13.9111 0.7311 15.3464 12.4758
CAST/EiJ m 16.0667 0.7311 17.5019 14.6314
CBA/J f 23.95 0.6936 25.3116 22.5884
CBA/J m 32.36 0.6936 33.7216 30.9984
CE/J f 27.5 0.6936 28.8616 26.1384
CE/J m 25.9 0.829 27.5274 24.2726
CZECHII/EiJ f 11.9143 0.829 13.5417 10.2868
CZECHII/EiJ m 13.9429 0.829 15.5703 12.3154
DBA/1J f 23.74 0.6936 25.1016 22.3784
DBA/1J m 25.0222 0.7311 26.4575 23.5869
DBA/2J f 26.58 0.6936 27.9416 25.2184
DBA/2J m 34.9333 0.7311 36.3686 33.4981
FVB/NJ f 24.24 0.6936 25.6016 22.8784
FVB/NJ m 28.6 1.2663 31.086 26.114
I/LnJ f 22.42 0.6936 23.7816 21.0584
I/LnJ m 26.11 0.6936 27.4716 24.7484
KK/HlJ f 35.2222 0.7311 36.6575 33.7869
KK/HlJ m 30.7556 0.7311 32.1908 29.3203
LP/J f 23.38 0.6936 24.7416 22.0184
LP/J m 33.23 0.6936 34.5916 31.8684
MOLF/EiJ f 14.05 0.8954 15.8078 12.2922
MOLF/EiJ m 15.22 0.6936 16.5816 13.8584
NOD/ShiLtJ f 26.14 0.6936 27.5016 24.7784
NOD/ShiLtJ m 30.0714 0.829 31.6989 28.444
NON/ShiLtJ f 30.88 0.6936 32.2416 29.5184
NON/ShiLtJ m 35.17 0.6936 36.5316 33.8084
NZB/BlNJ f 27.73 0.6936 29.0916 26.3684
NZB/BlNJ m 35.2111 0.7311 36.6464 33.7758
NZW/LacJ f 29.9375 0.7754 31.4598 28.4152
NZW/LacJ m 35.71 0.6936 37.0716 34.3484
PERA/EiJ f 20.2625 0.7754 21.7848 18.7402
PERA/EiJ m 21.3 1.0966 23.4529 19.1471
P/J f 21.56 0.6936 22.9216 20.1984
P/J m 26.84 0.6936 28.2016 25.4784
PL/J f 20.85 0.6936 22.2116 19.4884
PL/J m 25.0 1.2663 27.486 22.514
RBF/DnJ f 29.87 0.6936 31.2316 28.5084
RBF/DnJ m 33.8 0.7311 35.2353 32.3647
RF/J f 34.1 0.6936 35.4616 32.7384
RF/J m 35.2167 0.8954 36.9745 33.4588
RIIIS/J f 19.71 0.6936 21.0716 18.3484
RIIIS/J m 26.4556 0.7311 27.8908 25.0203
SEA/GnJ f 26.3444 0.7311 27.7797 24.9092
SEA/GnJ m 28.19 0.6936 29.5516 26.8284
SJL/J f 22.21 0.6936 23.5716 20.8484
SJL/J m 27.5222 0.7311 28.9575 26.0869
SM/J f 18.1625 0.7754 19.6848 16.6402
SM/J m 24.1167 0.8954 25.8745 22.3588
SPRET/EiJ f 14.3714 0.829 15.9989 12.744
SPRET/EiJ m 14.64 0.9808 16.5656 12.7144
SWR/J f 22.56 0.6936 23.9216 21.1984
SWR/J m 25.525 0.7754 27.0473 24.0027
WSB/EiJ f 11.7467 0.7311 13.1819 10.3114
WSB/EiJ m 14.2778 0.7311 15.7131 12.8425


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 25.94 0.4904 26.9028 24.9772
A/J both 21.5 0.4904 22.4628 20.5372
AKR/J both 35.385 0.4904 36.3478 34.4222
BALB/cJ both 29.085 0.4904 30.0478 28.1222
BPH/2J both 22.4839 0.5039 23.4731 21.4947
BPL/1J both 23.705 0.4904 24.6678 22.7422
BPN/3J both 28.1289 0.5039 29.1181 27.1397
BTBR T+ Itpr3tf/J both 32.3677 0.4569 33.2648 31.4707
C3H/HeJ both 26.275 0.4904 27.2378 25.3122
C57BL/10J both 26.31 0.4904 27.2728 25.3472
C57BL/6J both 23.3433 0.3788 24.0869 22.5997
C57BLKS/J both 22.6788 0.3395 23.3453 22.0122
C57BR/cdJ both 24.64 0.4904 25.6028 23.6772
C57L/J both 26.58 0.4904 27.5428 25.6172
C58/J both 23.59 0.4904 24.5528 22.6272
CAST/EiJ both 14.9889 0.5169 16.0038 13.974
CBA/J both 28.155 0.4904 29.1178 27.1922
CE/J both 26.7 0.5404 27.761 25.639
CZECHII/EiJ both 12.9286 0.5862 14.0794 11.7778
DBA/1J both 24.3811 0.5039 25.3703 23.3919
DBA/2J both 30.7567 0.5039 31.7459 29.7675
FVB/NJ both 26.42 0.7219 27.8372 25.0028
I/LnJ both 24.265 0.4904 25.2278 23.3022
KK/HlJ both 32.9889 0.5169 34.0038 31.974
LP/J both 28.305 0.4904 29.2678 27.3422
MOLF/EiJ both 14.635 0.5663 15.7468 13.5232
NOD/ShiLtJ both 28.1057 0.5404 29.1667 27.0447
NON/ShiLtJ both 33.025 0.4904 33.9878 32.0622
NZB/BlNJ both 31.4706 0.5039 32.4598 30.4814
NZW/LacJ both 32.8238 0.5202 33.845 31.8025
PERA/EiJ both 20.7812 0.6715 22.0996 19.4629
P/J both 24.2 0.4904 25.1628 23.2372
PL/J both 22.925 0.7219 24.3422 21.5078
RBF/DnJ both 31.835 0.5039 32.8242 30.8458
RF/J both 34.6583 0.5663 35.7701 33.5466
RIIIS/J both 23.0828 0.5039 24.072 22.0936
SEA/GnJ both 27.2672 0.5039 28.2564 26.278
SJL/J both 24.8661 0.5039 25.8553 23.8769
SM/J both 21.1396 0.5922 22.3023 19.9769
SPRET/EiJ both 14.5057 0.6421 15.7663 13.2451
SWR/J both 24.0425 0.5202 25.0637 23.0213
WSB/EiJ both 13.0122 0.5169 14.0271 11.9973




  GWAS USING LINEAR MIXED MODELS

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