Project measure / variable:   Ackert1   pctfat_M20

ID, description, units MPD:25038   pctfat_M20   percent fat, head excluded   [%]  at age 20mo  
Data set, strains Ackert1   inbred   28 strains     sex: both     age: 87wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Ackert1 - percent fat, head excluded at age 20mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains26 strains
Mean of the strain means22.8   % 21.1   %
Median of the strain means21.7   % 19.9   %
SD of the strain means± 6.82 ± 5.52
Coefficient of variation (CV)0.299 0.261
Min–max range of strain means13.9   –   39.4   % 15.4   –   42.0   %
Mean sample size per strain7.0   mice 6.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 447.5186 447.5186 14.6249 0.0002
strain 27 10028.2257 371.4158 12.1378 < 0.0001
sex:strain 27 2537.5087 93.9818 3.0713 < 0.0001
Residuals 310 9485.9461 30.5998


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 28.4 9.13   8 3.23 0.321 20.9, 47.6 0.82
129S1/SvImJ m 22.5 6.11   7 2.31 0.272 17.3, 31.6 0.25
A/J f 22.9 4.27   3 2.47 0.187 18.9, 27.4 0.01
A/J m 19.3 2.32   4 1.16 0.12 16.7, 22.3 -0.33
BALB/cByJ f 17.6 5.87   5 2.63 0.333 8.34, 24.1 -0.76
BALB/cByJ m 19.9 2.12   7 0.801 0.106 16.4, 22.8 -0.22
BTBR T+ Itpr3tf/J f 16.0 5.21   6 2.13 0.325 9.14, 23.3 -1.0
BTBR T+ Itpr3tf/J m 19.1 0.723   3 0.418 0.0379 18.6, 19.9 -0.37
BUB/BnJ f 15.2 2.59   8 0.916 0.17 11.8, 19.1 -1.11
C3H/HeJ f 16.0 1.07   6 0.437 0.0671 14.8, 17.8 -1.0
C3H/HeJ m 16.1 1.8   8 0.637 0.112 13.8, 18.8 -0.91
C57BL/10J f 24.1 5.81   8 2.05 0.241 15.2, 33.1 0.19
C57BL/10J m 22.1 2.91   7 1.1 0.131 18.8, 27.2 0.18
C57BL/6J f 20.4 3.39   8 1.2 0.166 15.7, 26.1 -0.35
C57BL/6J m 22.3 5.83   7 2.2 0.262 17.5, 34.9 0.21
C57BLKS/J f 25.0 3.96   7 1.5 0.158 21.0, 32.0 0.32
C57BLKS/J m 21.0 3.63   7 1.37 0.173 15.5, 25.2 -0.02
C57BR/cdJ f 18.2 3.06   8 1.08 0.168 14.0, 22.6 -0.67
C57BR/cdJ m 22.6 3.28   8 1.16 0.145 18.4, 26.8 0.27
C57L/J f 21.6 5.34   8 1.89 0.248 14.2, 28.5 -0.18
C57L/J m 18.9 5.59   7 2.11 0.296 14.1, 27.1 -0.4
CBA/J f 35.5 10.2   8 3.6 0.287 16.0, 47.5 1.86
CBA/J m 19.2 1.98   8 0.699 0.103 16.1, 21.6 -0.35
DBA/2J f 25.1 7.34   7 2.78 0.293 15.1, 35.0 0.34
DBA/2J m 16.3 1.24   6 0.506 0.0761 14.7, 18.3 -0.87
FVB/NJ f 21.1 8.18   6 3.34 0.387 13.2, 32.1 -0.25
FVB/NJ m 22.1 8.26   5 3.69 0.373 17.4, 36.8 0.18
KK/HlJ f 23.8 5.38   6 2.19 0.226 20.0, 33.7 0.15
KK/HlJ m 22.9 6.28   7 2.37 0.275 17.4, 34.9 0.32
LP/J f 23.5 1.83   8 0.648 0.0781 19.9, 25.4 0.1
LP/J m 19.9 1.99   8 0.703 0.1 17.2, 22.3 -0.22
MRL/MpJ f 15.5 1.75   4 0.875 0.113 13.3, 17.2 -1.07
MRL/MpJ m 17.4 3.68   4 1.84 0.211 14.4, 22.2 -0.68
NOD.B10Sn-H2b/J f 13.9 1.65   8 0.584 0.119 10.8, 16.2 -1.3
NOD.B10Sn-H2b/J m 15.9 1.86   5 0.834 0.117 13.2, 17.9 -0.95
NON/ShiLtJ f 21.8 6.58   9 2.19 0.302 11.9, 31.6 -0.15
NON/ShiLtJ m 26.6 12.3   8 4.35 0.462 11.2, 47.8 0.99
NZO/HlLtJ f 37.1 12.7   5 5.69 0.343 14.9, 46.0 2.1
NZO/HlLtJ m 42.0 8.53   4 4.26 0.203 29.8, 49.5 3.78
NZW/LacJ f 39.4 7.85   8 2.78 0.199 25.7, 49.0 2.43
NZW/LacJ m 29.0 7.21   7 2.73 0.249 20.6, 41.7 1.43
P/J f 18.2 4.07   8 1.44 0.223 13.0, 24.2 -0.67
P/J m 15.4 3.7   6 1.51 0.241 10.8, 21.2 -1.04
PL/J f 17.0 2.68   5 1.2 0.158 13.1, 19.5 -0.85
PWD/PhJ f 31.2 4.13   8 1.46 0.132 24.1, 35.6 1.23
PWD/PhJ m 18.6 5.2   7 1.97 0.28 13.8, 28.5 -0.46
RIIIS/J f 28.7 6.61   8 2.34 0.23 15.7, 34.6 0.86
RIIIS/J m 26.6 5.86   8 2.07 0.22 18.1, 34.0 0.99
SM/J f 25.5 6.18   8 2.19 0.243 18.7, 36.3 0.4
SM/J m 20.6 3.94   8 1.39 0.191 17.9, 28.5 -0.1
SWR/J f 15.4 1.38   4 0.691 0.0896 13.4, 16.4 -1.08
SWR/J m 15.5 1.36   7 0.515 0.0879 13.2, 17.3 -1.02
WSB/EiJ f 20.3 6.6   8 2.33 0.325 16.0, 36.0 -0.37
WSB/EiJ m 17.5 1.68   6 0.688 0.0962 15.2, 20.1 -0.66


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 28.425 1.9558 32.2732 24.5768
129S1/SvImJ m 22.4857 2.0908 26.5996 18.3718
A/J f 22.9 3.1937 29.1841 16.6159
A/J m 19.325 2.7659 24.7672 13.8828
BALB/cByJ f 17.628 2.4739 22.4957 12.7603
BALB/cByJ m 19.9286 2.0908 24.0425 15.8146
BTBR T+ Itpr3tf/J f 16.04 2.2583 20.4836 11.5964
BTBR T+ Itpr3tf/J m 19.0667 3.1937 25.3508 12.7825
BUB/BnJ f 15.225 1.9558 19.0732 11.3768
BUB/BnJ m 15.35 3.9115 23.0465 7.6535
C3H/HeJ f 15.9667 2.2583 20.4102 11.5231
C3H/HeJ m 16.1125 1.9558 19.9607 12.2643
C57BL/10J f 24.1375 1.9558 27.9857 20.2893
C57BL/10J m 22.1 2.0908 26.2139 17.9861
C57BL/6J f 20.3875 1.9558 24.2357 16.5393
C57BL/6J m 22.2714 2.0908 26.3854 18.1575
C57BLKS/J f 25.0429 2.0908 29.1568 20.9289
C57BLKS/J m 21.0143 2.0908 25.1282 16.9004
C57BR/cdJ f 18.225 1.9558 22.0732 14.3768
C57BR/cdJ m 22.625 1.9558 26.4732 18.7768
C57L/J f 21.5625 1.9558 25.4107 17.7143
C57L/J m 18.8714 2.0908 22.9854 14.7575
CBA/J f 35.4625 1.9558 39.3107 31.6143
CBA/J m 19.175 1.9558 23.0232 15.3268
DBA/2J f 25.0714 2.0908 29.1854 20.9575
DBA/2J m 16.2833 2.2583 20.7269 11.8398
FVB/NJ f 21.1333 2.2583 25.5769 16.6898
FVB/NJ m 22.14 2.4739 27.0077 17.2723
KK/HlJ f 23.7667 2.2583 28.2102 19.3231
KK/HlJ m 22.8571 2.0908 26.9711 18.7432
LP/J f 23.4625 1.9558 27.3107 19.6143
LP/J m 19.875 1.9558 23.7232 16.0268
MRL/MpJ f 15.525 2.7659 20.9672 10.0828
MRL/MpJ m 17.45 2.7659 22.8922 12.0078
NOD.B10Sn-H2b/J f 13.9125 1.9558 17.7607 10.0643
NOD.B10Sn-H2b/J m 15.9 2.4739 20.7677 11.0323
NON/ShiLtJ f 21.8111 1.8439 25.4393 18.183
NON/ShiLtJ m 26.6125 1.9558 30.4607 22.7643
NZO/HlLtJ f 37.06 2.4739 41.9277 32.1923
NZO/HlLtJ m 41.975 2.7659 47.4172 36.5328
NZW/LacJ f 39.375 1.9558 43.2232 35.5268
NZW/LacJ m 29.0 2.0908 33.1139 24.8861
P/J f 18.2375 1.9558 22.0857 14.3893
P/J m 15.3833 2.2583 19.8269 10.9398
PL/J f 16.96 2.4739 21.8277 12.0923
PL/J m 18.2 3.9115 25.8965 10.5035
PWD/PhJ f 31.225 1.9558 35.0732 27.3768
PWD/PhJ m 18.6143 2.0908 22.7282 14.5004
RIIIS/J f 28.7375 1.9558 32.5857 24.8893
RIIIS/J m 26.5875 1.9558 30.4357 22.7393
SM/J f 25.4875 1.9558 29.3357 21.6393
SM/J m 20.65 1.9558 24.4982 16.8018
SWR/J f 15.425 2.7659 20.8672 9.9828
SWR/J m 15.5 2.0908 19.6139 11.3861
WSB/EiJ f 20.3375 1.9558 24.1857 16.4893
WSB/EiJ m 17.5167 2.2583 21.9602 13.0731


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 25.4554 1.4315 28.272 22.6387
A/J both 21.1125 2.1125 25.2691 16.9559
BALB/cByJ both 18.7783 1.6195 21.9649 15.5916
BTBR T+ Itpr3tf/J both 17.5533 1.9558 21.4016 13.7051
BUB/BnJ both 15.2875 2.1866 19.59 10.985
C3H/HeJ both 16.0396 1.4937 18.9787 13.1004
C57BL/10J both 23.1188 1.4315 25.9354 20.3021
C57BL/6J both 21.3295 1.4315 24.1461 18.5128
C57BLKS/J both 23.0286 1.4784 25.9376 20.1196
C57BR/cdJ both 20.425 1.3829 23.1461 17.7039
C57L/J both 20.217 1.4315 23.0336 17.4003
CBA/J both 27.3187 1.3829 30.0399 24.5976
DBA/2J both 20.6774 1.5388 23.7052 17.6496
FVB/NJ both 21.6367 1.6748 24.9321 18.3412
KK/HlJ both 23.3119 1.5388 26.3397 20.2841
LP/J both 21.6687 1.3829 24.3899 18.9476
MRL/MpJ both 16.4875 1.9558 20.3357 12.6393
NOD.B10Sn-H2b/J both 14.9063 1.5768 18.0088 11.8037
NON/ShiLtJ both 24.2118 1.344 26.8563 21.5674
NZO/HlLtJ both 39.5175 1.8554 43.1683 35.8667
NZW/LacJ both 34.1875 1.4315 37.0041 31.3709
P/J both 16.8104 1.4937 19.7496 13.8713
PL/J both 17.58 2.3141 22.1333 13.0267
PWD/PhJ both 24.9196 1.4315 27.7363 22.103
RIIIS/J both 27.6625 1.3829 30.3836 24.9414
SM/J both 23.0688 1.3829 25.7899 20.3476
SWR/J both 15.4625 1.7336 18.8736 12.0514
WSB/EiJ both 18.9271 1.4937 21.8662 15.9879




  GWAS USING LINEAR MIXED MODELS