Project measure / variable:   Ackert1   pctfat_M06

ID, description, units MPD:25036   pctfat_M06   percent fat, head excluded   [%]  at age 6mo  
Data set, strains Ackert1   inbred   32 strains     sex: both     age: 26wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Ackert1 - percent fat, head excluded at age 6mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested31 strains30 strains
Mean of the strain means24.9   % 22.5   %
Median of the strain means21.7   % 21.1   %
SD of the strain means± 6.40 ± 4.26
Coefficient of variation (CV)0.257 0.189
Min–max range of strain means17.2   –   38.4   % 16.6   –   32.1   %
Mean sample size per strain7.0   mice 6.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 519.2056 519.2056 53.6852 < 0.0001
strain 30 8141.3845 271.3795 28.0603 < 0.0001
sex:strain 30 2789.8605 92.9954 9.6156 < 0.0001
Residuals 344 3326.9258 9.6713


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 23.7 2.03   8 0.717 0.0857 22.1, 28.3 -0.18
129S1/SvImJ m 19.1 1.23   7 0.464 0.0645 17.6, 20.6 -0.8
A/J f 31.3 5.35   8 1.89 0.171 19.6, 36.4 1.0
A/J m 23.7 5.51   8 1.95 0.233 16.3, 32.5 0.28
AKR/J f 38.4 4.73   6 1.93 0.123 30.1, 44.1 2.11
AKR/J m 32.1 2.04   5 0.912 0.0636 29.0, 34.0 2.25
BALB/cByJ f 21.1 2.3   6 0.939 0.109 19.1, 25.4 -0.59
BALB/cByJ m 19.3 1.33   6 0.544 0.0691 17.7, 21.0 -0.75
BTBR T+ Itpr3tf/J f 33.7 5.52   5 2.47 0.164 28.2, 41.2 1.38
BTBR T+ Itpr3tf/J m 24.2 2.5   7 0.945 0.103 20.9, 27.1 0.4
BUB/BnJ f 17.2 1.39   8 0.49 0.0806 15.5, 18.9 -1.2
BUB/BnJ m 16.6 2.13   4 1.06 0.128 14.4, 19.3 -1.39
C3H/HeJ f 19.3 1.28   8 0.452 0.0663 17.4, 20.7 -0.87
C3H/HeJ m 21.4 4.48   6 1.83 0.209 16.1, 28.4 -0.26
C57BL/10J f 21.9 4.01   8 1.42 0.183 17.4, 28.3 -0.47
C57BL/10J m 20.9 1.74   6 0.712 0.0835 18.0, 22.5 -0.38
C57BL/6J f 21.5 2.99   8 1.06 0.139 17.8, 26.0 -0.53
C57BL/6J m 18.1 3.07   8 1.09 0.169 15.5, 24.3 -1.04
C57BLKS/J f 21.1 1.44   8 0.508 0.0679 18.9, 22.8 -0.59
C57BLKS/J m 21.0 1.87   8 0.661 0.0889 17.5, 23.6 -0.36
C57BR/cdJ f 18.8 2.08   7 0.785 0.111 16.4, 21.9 -0.95
C57BR/cdJ m 23.6 4.04   6 1.65 0.172 19.3, 28.3 0.25
C57L/J f 21.2 2.96   7 1.12 0.14 17.6, 25.6 -0.58
C57L/J m 32.0 4.56   5 2.04 0.143 26.0, 38.0 2.23
CAST/EiJ f 21.2 0.784   6 0.32 0.0369 20.2, 22.2 -0.58
CAST/EiJ m 20.4 1.84   7 0.694 0.09 17.9, 22.9 -0.5
CBA/J f 30.9 3.71   8 1.31 0.12 24.7, 34.2 0.94
CBA/J m 28.7 1.17   4 0.586 0.0408 27.7, 30.1 1.45
DBA/2J f 34.4 2.99   5 1.34 0.087 30.3, 38.5 1.49
DBA/2J m 20.3 4.06   7 1.54 0.2 13.9, 25.0 -0.52
FVB/NJ f 27.2 3.93   8 1.39 0.145 18.5, 30.8 0.36
FVB/NJ m 21.3 2.97   6 1.21 0.14 16.4, 24.9 -0.29
KK/HlJ f 25.1 3.9   4 1.95 0.155 20.9, 30.3 0.03
KK/HlJ m 25.1 3.54   7 1.34 0.141 19.7, 29.2 0.61
LP/J f 21.7 1.9   6 0.776 0.0875 19.7, 24.5 -0.5
LP/J m 20.2 1.53   8 0.539 0.0754 17.7, 21.9 -0.54
MOLF/EiJ f 21.5 1.23   7 0.464 0.0573 19.9, 23.3 -0.53
MOLF/EiJ m 21.8 1.5   7 0.565 0.0687 19.0, 23.6 -0.17
MRL/MpJ f 36.7 2.62   3 1.51 0.0713 34.9, 39.7 1.85
MRL/MpJ m 25.9 2.65   7 1.0 0.103 21.5, 29.6 0.79
NOD.B10Sn-H2b/J f 18.1 1.48   8 0.524 0.082 16.2, 19.7 -1.06
NON/ShiLtJ f 32.1 2.77   8 0.98 0.0863 28.4, 36.7 1.13
NON/ShiLtJ m 26.5 4.7   7 1.78 0.177 19.6, 31.8 0.93
NZW/LacJ f 35.0 3.74   8 1.32 0.107 31.5, 41.1 1.58
NZW/LacJ m 25.9 5.48   5 2.45 0.212 19.3, 33.6 0.79
P/J f 19.8 2.22   6 0.908 0.112 17.4, 23.4 -0.79
P/J m 19.3 3.15   6 1.29 0.163 15.8, 23.3 -0.75
PL/J f 27.1 2.43   8 0.86 0.0898 24.4, 31.6 0.35
PL/J m 28.7 2.66   8 0.939 0.0924 25.9, 33.2 1.45
PWD/PhJ f 20.1 1.25   5 0.56 0.0622 18.2, 21.3 -0.75
PWD/PhJ m 18.2 0.96   4 0.48 0.0528 17.2, 19.0 -1.01
RIIIS/J f 22.4 1.83   8 0.648 0.0816 20.4, 25.6 -0.39
RIIIS/J m 26.8 3.02   6 1.23 0.113 24.2, 32.4 1.01
SJL/J f 18.8 2.24   8 0.79 0.119 16.4, 23.1 -0.95
SJL/J m 16.8 2.45   6 1.0 0.146 13.4, 21.0 -1.34
SM/J f 32.4 3.64   8 1.29 0.113 27.8, 39.3 1.17
SM/J m 18.0 6.22   8 2.2 0.345 12.4, 30.3 -1.06
SWR/J f 17.6 1.24   6 0.507 0.0706 15.5, 18.6 -1.14
SWR/J m 18.6 3.25   6 1.33 0.175 14.4, 22.1 -0.92
WSB/EiJ f 20.1 1.45   6 0.593 0.0723 17.5, 21.5 -0.75
WSB/EiJ m 21.0 3.65   6 1.49 0.174 17.1, 27.3 -0.36


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 23.675 1.0995 25.8376 21.5124
129S1/SvImJ m 19.0571 1.1754 21.3691 16.7452
A/J f 31.3375 1.0995 33.5001 29.1749
A/J m 23.7125 1.0995 25.8751 21.5499
AKR/J f 38.45 1.2696 40.9472 35.9528
AKR/J m 32.06 1.3908 34.7955 29.3245
BALB/cByJ f 21.0833 1.2696 23.5805 18.5862
BALB/cByJ m 19.3 1.2696 21.7972 16.8028
BTBR T+ Itpr3tf/J f 33.66 1.3908 36.3955 30.9245
BTBR T+ Itpr3tf/J m 24.2286 1.1754 26.5405 21.9167
BUB/BnJ f 17.1875 1.0995 19.3501 15.0249
BUB/BnJ m 16.575 1.5549 19.6334 13.5166
C3H/HeJ f 19.275 1.0995 21.4376 17.1124
C3H/HeJ m 21.4333 1.2696 23.9305 18.9362
C57BL/10J f 21.95 1.0995 24.1126 19.7874
C57BL/10J m 20.8667 1.2696 23.3638 18.3695
C57BL/6J f 21.475 1.0995 23.6376 19.3124
C57BL/6J m 18.15 1.0995 20.3126 15.9874
C57BLKS/J f 21.1375 1.0995 23.3001 18.9749
C57BLKS/J m 21.0375 1.0995 23.2001 18.8749
C57BR/cdJ f 18.7714 1.1754 21.0833 16.4595
C57BR/cdJ m 23.55 1.2696 26.0472 21.0528
C57L/J f 21.1857 1.1754 23.4976 18.8738
C57L/J m 31.98 1.3908 34.7155 29.2445
CAST/EiJ f 21.2333 1.2696 23.7305 18.7362
CAST/EiJ m 20.4 1.1754 22.7119 18.0881
CBA/J f 30.9375 1.0995 33.1001 28.7749
CBA/J m 28.725 1.5549 31.7834 25.6666
DBA/2J f 34.36 1.3908 37.0955 31.6245
DBA/2J m 20.3143 1.1754 22.6262 18.0024
FVB/NJ f 27.1625 1.0995 29.3251 24.9999
FVB/NJ m 21.25 1.2696 23.7472 18.7528
KK/HlJ f 25.1 1.5549 28.1584 22.0416
KK/HlJ m 25.0714 1.1754 27.3833 22.7595
LP/J f 21.7167 1.2696 24.2138 19.2195
LP/J m 20.2375 1.0995 22.4001 18.0749
MOLF/EiJ f 21.4571 1.1754 23.7691 19.1452
MOLF/EiJ m 21.7857 1.1754 24.0976 19.4738
MRL/MpJ f 36.7 1.7955 40.2315 33.1685
MRL/MpJ m 25.8857 1.1754 28.1976 23.5738
NOD.B10Sn-H2b/J f 18.075 1.0995 20.2376 15.9124
NOD.B10Sn-H2b/J m 16.7 2.199 21.0252 12.3748
NON/ShiLtJ f 32.0875 1.0995 34.2501 29.9249
NON/ShiLtJ m 26.5143 1.1754 28.8262 24.2024
NZW/LacJ f 35.05 1.0995 37.2126 32.8874
NZW/LacJ m 25.88 1.3908 28.6155 23.1445
P/J f 19.8 1.2696 22.2972 17.3028
P/J m 19.3333 1.2696 21.8305 16.8362
PL/J f 27.0875 1.0995 29.2501 24.9249
PL/J m 28.7375 1.0995 30.9001 26.5749
PWD/PhJ f 20.12 1.3908 22.8555 17.3845
PWD/PhJ m 18.175 1.5549 21.2334 15.1166
RIIIS/J f 22.45 1.0995 24.6126 20.2874
RIIIS/J m 26.8167 1.2696 29.3138 24.3195
SJL/J f 18.8 1.0995 20.9626 16.6374
SJL/J m 16.8 1.2696 19.2972 14.3028
SM/J f 32.3875 1.0995 34.5501 30.2249
SM/J m 18.025 1.0995 20.1876 15.8624
SWR/J f 17.6 1.2696 20.0972 15.1028
SWR/J m 18.5667 1.2696 21.0638 16.0695
WSB/EiJ f 20.0833 1.2696 22.5805 17.5862
WSB/EiJ m 20.9833 1.2696 23.4805 18.4862


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 21.3661 0.8048 22.9489 19.7832
A/J both 27.525 0.7775 29.0542 25.9958
AKR/J both 35.255 0.9416 37.1069 33.4031
BALB/cByJ both 20.1917 0.8977 21.9574 18.4259
BTBR T+ Itpr3tf/J both 28.9443 0.9105 30.7351 27.1535
BUB/BnJ both 16.8813 0.9522 18.7541 15.0084
C3H/HeJ both 20.3542 0.8398 22.0059 18.7025
C57BL/10J both 21.4083 0.8398 23.06 19.7566
C57BL/6J both 19.8125 0.7775 21.3417 18.2833
C57BLKS/J both 21.0875 0.7775 22.6167 19.5583
C57BR/cdJ both 21.1607 0.8651 22.8622 19.4592
C57L/J both 26.5829 0.9105 28.3737 24.7921
CAST/EiJ both 20.8167 0.8651 22.5182 19.1151
CBA/J both 29.8313 0.9522 31.7041 27.9584
DBA/2J both 27.3371 0.9105 29.1279 25.5463
FVB/NJ both 24.2063 0.8398 25.858 22.5545
KK/HlJ both 25.0857 0.9746 27.0027 23.1688
LP/J both 20.9771 0.8398 22.6288 19.3254
MOLF/EiJ both 21.6214 0.8311 23.2562 19.9867
MRL/MpJ both 31.2929 1.073 33.4033 29.1824
NOD.B10Sn-H2b/J both 17.3875 1.2293 19.8054 14.9696
NON/ShiLtJ both 29.3009 0.8048 30.8838 27.718
NZW/LacJ both 30.465 0.8864 32.2085 28.7215
P/J both 19.5667 0.8977 21.3324 17.8009
PL/J both 27.9125 0.7775 29.4417 26.3833
PWD/PhJ both 19.1475 1.0431 21.1991 17.0959
RIIIS/J both 24.6333 0.8398 26.285 22.9816
SJL/J both 17.8 0.8398 19.4517 16.1483
SM/J both 25.2062 0.7775 26.7354 23.6771
SWR/J both 18.0833 0.8977 19.8491 16.3176
WSB/EiJ both 20.5333 0.8977 22.2991 18.7676




  GWAS USING LINEAR MIXED MODELS