Project measure / variable:   Ackert1   bone_area_M20

ID, description, units MPD:25023   bone_area_M20   whole body bone area, head excluded   [cm2]  at age 20mo  
Data set, strains Ackert1   inbred   28 strains     sex: both     age: 87wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Ackert1 - whole body bone area, head excluded at age 20mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested28 strains26 strains
Mean of the strain means9.47   cm2 9.81   cm2
Median of the strain means9.45   cm2 9.58   cm2
SD of the strain means± 1.17 ± 1.18
Coefficient of variation (CV)0.123 0.120
Min–max range of strain means7.46   –   12.2   cm2 8.00   –   12.8   cm2
Mean sample size per strain7.0   mice 6.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 6.7717 6.7717 14.1548 0.0002
strain 27 395.5508 14.65 30.6229 < 0.0001
sex:strain 27 35.5261 1.3158 2.7504 < 0.0001
Residuals 310 148.3044 0.4784


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 10.0 0.387   8 0.137 0.0386 9.36, 10.5 0.45
129S1/SvImJ m 10.1 0.763   7 0.288 0.0752 9.4, 11.3 0.24
A/J f 8.4 0.663   3 0.383 0.0789 7.78, 9.1 -0.92
A/J m 8.59 0.477   4 0.238 0.0555 8.13, 9.13 -1.04
BALB/cByJ f 9.37 0.601   5 0.269 0.0642 8.67, 10.3 -0.09
BALB/cByJ m 9.49 0.467   7 0.176 0.0492 8.71, 9.89 -0.27
BTBR T+ Itpr3tf/J f 11.2 0.731   6 0.299 0.065 10.5, 12.4 1.48
BTBR T+ Itpr3tf/J m 11.9 0.755   3 0.436 0.0634 11.1, 12.6 1.77
BUB/BnJ f 10.3 0.597   8 0.211 0.0581 9.46, 11.2 0.71
C3H/HeJ f 10.6 1.02   6 0.415 0.096 9.02, 11.9 0.97
C3H/HeJ m 11.0 0.433   8 0.153 0.0393 10.5, 11.7 1.01
C57BL/10J f 8.51 1.03   8 0.365 0.121 7.28, 9.83 -0.83
C57BL/10J m 8.76 0.448   7 0.169 0.0512 8.24, 9.48 -0.9
C57BL/6J f 8.89 0.792   8 0.28 0.0891 7.21, 9.79 -0.5
C57BL/6J m 9.87 0.529   7 0.2 0.0536 9.33, 10.7 0.05
C57BLKS/J f 8.27 0.415   7 0.157 0.0501 7.59, 8.75 -1.03
C57BLKS/J m 9.4 0.481   7 0.182 0.0512 8.86, 10.2 -0.35
C57BR/cdJ f 10.1 0.439   8 0.155 0.0434 9.46, 10.6 0.54
C57BR/cdJ m 9.38 0.766   8 0.271 0.0817 8.39, 10.5 -0.37
C57L/J f 11.0 0.614   8 0.217 0.0558 10.2, 11.9 1.31
C57L/J m 11.0 0.774   7 0.292 0.0701 9.93, 11.8 1.01
CBA/J f 8.94 0.765   8 0.27 0.0856 7.85, 10.2 -0.46
CBA/J m 10.3 0.769   8 0.272 0.0745 9.13, 11.2 0.41
DBA/2J f 8.23 0.736   7 0.278 0.0895 7.24, 9.1 -1.07
DBA/2J m 9.98 0.308   6 0.126 0.0309 9.6, 10.4 0.14
FVB/NJ f 9.69 0.732   6 0.299 0.0755 8.78, 10.9 0.19
FVB/NJ m 9.33 1.56   5 0.696 0.167 6.58, 10.3 -0.41
KK/HlJ f 9.81 0.668   6 0.273 0.0681 8.78, 10.4 0.29
KK/HlJ m 9.48 0.292   7 0.11 0.0308 9.07, 9.87 -0.28
LP/J f 9.54 0.289   8 0.102 0.0302 8.98, 9.94 0.06
LP/J m 9.47 0.678   8 0.24 0.0716 8.49, 10.1 -0.29
MRL/MpJ f 12.2 0.714   4 0.357 0.0583 11.5, 13.2 2.34
MRL/MpJ m 12.8 0.173   4 0.0866 0.0136 12.5, 12.9 2.54
NOD.B10Sn-H2b/J f 11.6 0.356   8 0.126 0.0308 11.2, 12.2 1.82
NOD.B10Sn-H2b/J m 12.2 0.46   5 0.206 0.0377 11.6, 12.8 2.03
NON/ShiLtJ f 10.1 0.519   9 0.173 0.0515 9.39, 10.9 0.54
NON/ShiLtJ m 9.67 0.744   8 0.263 0.0769 8.81, 10.8 -0.12
NZO/HlLtJ f 9.59 1.06   5 0.476 0.111 8.6, 11.1 0.1
NZO/HlLtJ m 10.1 1.12   4 0.561 0.111 8.52, 11.1 0.24
NZW/LacJ f 9.95 1.11   8 0.392 0.112 8.85, 11.7 0.41
NZW/LacJ m 9.87 0.784   7 0.296 0.0795 8.71, 10.9 0.05
P/J f 8.5 0.626   8 0.221 0.0736 7.83, 9.39 -0.84
P/J m 8.98 0.504   6 0.206 0.0561 8.29, 9.55 -0.71
PL/J f 8.67 0.39   5 0.174 0.0449 8.32, 9.19 -0.69
PWD/PhJ f 7.82 0.65   8 0.23 0.0831 6.9, 8.64 -1.42
PWD/PhJ m 8.0 0.986   7 0.373 0.123 7.18, 10.1 -1.54
RIIIS/J f 8.17 0.878   8 0.311 0.108 7.36, 9.86 -1.12
RIIIS/J m 8.5 0.799   8 0.283 0.094 7.44, 10.0 -1.12
SM/J f 7.46 0.512   8 0.181 0.0686 6.77, 8.32 -1.73
SM/J m 8.87 0.39   8 0.138 0.044 8.13, 9.44 -0.8
SWR/J f 9.34 0.46   4 0.23 0.0493 8.82, 9.94 -0.11
SWR/J m 9.77 0.63   7 0.238 0.0644 8.62, 10.5 -0.04
WSB/EiJ f 9.02 0.972   8 0.344 0.108 8.02, 10.8 -0.39
WSB/EiJ m 8.33 0.475   6 0.194 0.0571 7.65, 8.8 -1.26


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 10.0237 0.2445 10.5049 9.5426
129S1/SvImJ m 10.1429 0.2614 10.6572 9.6285
A/J f 8.4033 0.3993 9.1891 7.6176
A/J m 8.5875 0.3458 9.268 7.907
BALB/cByJ f 9.366 0.3093 9.9746 8.7574
BALB/cByJ m 9.4943 0.2614 10.0087 8.9799
BTBR T+ Itpr3tf/J f 11.25 0.2824 11.8056 10.6944
BTBR T+ Itpr3tf/J m 11.9 0.3993 12.6857 11.1143
BUB/BnJ f 10.2825 0.2445 10.7637 9.8013
BUB/BnJ m 10.6 0.4891 11.5623 9.6377
C3H/HeJ f 10.5783 0.2824 11.1339 10.0227
C3H/HeJ m 11.025 0.2445 11.5062 10.5438
C57BL/10J f 8.5062 0.2445 8.9874 8.0251
C57BL/10J m 8.7614 0.2614 9.2758 8.247
C57BL/6J f 8.8875 0.2445 9.3687 8.4063
C57BL/6J m 9.8657 0.2614 10.3801 9.3513
C57BLKS/J f 8.2729 0.2614 8.7872 7.7585
C57BLKS/J m 9.3986 0.2614 9.913 8.8842
C57BR/cdJ f 10.1187 0.2445 10.5999 9.6376
C57BR/cdJ m 9.3825 0.2445 9.8637 8.9013
C57L/J f 11.0 0.2445 11.4812 10.5188
C57L/J m 11.0429 0.2614 11.5572 10.5285
CBA/J f 8.9363 0.2445 9.4174 8.4551
CBA/J m 10.33 0.2445 10.8112 9.8488
DBA/2J f 8.2271 0.2614 8.7415 7.7128
DBA/2J m 9.9783 0.2824 10.5339 9.4227
FVB/NJ f 9.6917 0.2824 10.2473 9.1361
FVB/NJ m 9.334 0.3093 9.9426 8.7254
KK/HlJ f 9.8117 0.2824 10.3673 9.2561
KK/HlJ m 9.4843 0.2614 9.9987 8.9699
LP/J f 9.5413 0.2445 10.0224 9.0601
LP/J m 9.4662 0.2445 9.9474 8.9851
MRL/MpJ f 12.25 0.3458 12.9305 11.5695
MRL/MpJ m 12.75 0.3458 13.4305 12.0695
NOD.B10Sn-H2b/J f 11.5875 0.2445 12.0687 11.1063
NOD.B10Sn-H2b/J m 12.22 0.3093 12.8286 11.6114
NON/ShiLtJ f 10.0833 0.2306 10.537 9.6297
NON/ShiLtJ m 9.6737 0.2445 10.1549 9.1926
NZO/HlLtJ f 9.594 0.3093 10.2026 8.9854
NZO/HlLtJ m 10.13 0.3458 10.8105 9.4495
NZW/LacJ f 9.95 0.2445 10.4312 9.4688
NZW/LacJ m 9.8657 0.2614 10.3801 9.3513
P/J f 8.5012 0.2445 8.9824 8.0201
P/J m 8.9817 0.2824 9.5373 8.4261
PL/J f 8.67 0.3093 9.2786 8.0614
PL/J m 8.815 0.4891 9.7773 7.8527
PWD/PhJ f 7.8238 0.2445 8.3049 7.3426
PWD/PhJ m 8.0029 0.2614 8.5172 7.4885
RIIIS/J f 8.1687 0.2445 8.6499 7.6876
RIIIS/J m 8.5012 0.2445 8.9824 8.0201
SM/J f 7.4637 0.2445 7.9449 6.9826
SM/J m 8.8737 0.2445 9.3549 8.3926
SWR/J f 9.3375 0.3458 10.018 8.657
SWR/J m 9.7729 0.2614 10.2872 9.2585
WSB/EiJ f 9.02 0.2445 9.5012 8.5388
WSB/EiJ m 8.325 0.2824 8.8806 7.7694


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 10.0833 0.179 10.4355 9.7311
A/J both 8.4954 0.2641 9.0151 7.9757
BALB/cByJ both 9.4301 0.2025 9.8286 9.0317
BTBR T+ Itpr3tf/J both 11.575 0.2445 12.0562 11.0938
BUB/BnJ both 10.4413 0.2734 10.9792 9.9033
C3H/HeJ both 10.8017 0.1868 11.1692 10.4342
C57BL/10J both 8.6338 0.179 8.986 8.2817
C57BL/6J both 9.3766 0.179 9.7288 9.0244
C57BLKS/J both 8.8357 0.1849 9.1994 8.472
C57BR/cdJ both 9.7506 0.1729 10.0909 9.4104
C57L/J both 11.0214 0.179 11.3736 10.6692
CBA/J both 9.6331 0.1729 9.9734 9.2929
DBA/2J both 9.1027 0.1924 9.4813 8.7242
FVB/NJ both 9.5128 0.2094 9.9249 9.1008
KK/HlJ both 9.648 0.1924 10.0266 9.2694
LP/J both 9.5037 0.1729 9.844 9.1635
MRL/MpJ both 12.5 0.2445 12.9812 12.0188
NOD.B10Sn-H2b/J both 11.9038 0.1972 12.2917 11.5158
NON/ShiLtJ both 9.8785 0.168 10.2092 9.5479
NZO/HlLtJ both 9.862 0.232 10.3185 9.4055
NZW/LacJ both 9.9079 0.179 10.26 9.5557
P/J both 8.7415 0.1868 9.109 8.374
PL/J both 8.7425 0.2893 9.3118 8.1732
PWD/PhJ both 7.9133 0.179 8.2655 7.5611
RIIIS/J both 8.335 0.1729 8.6752 7.9948
SM/J both 8.1687 0.1729 8.509 7.8285
SWR/J both 9.5552 0.2168 9.9817 9.1287
WSB/EiJ both 8.6725 0.1868 9.04 8.305




  GWAS USING LINEAR MIXED MODELS