Project measure / variable:   Ackert1   BL_M06

ID, description, units MPD:25001   BL_M06   body length, tip of nose to base of tail   [cm]  at age 6mo  
Data set, strains Ackert1   inbred   32 strains     sex: both     age: 26wks
Procedure body size and weight
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  STRAIN COMPARISON PLOT
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Ackert1 - body length, tip of nose to base of tail at age 6mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested31 strains30 strains
Mean of the strain means8.70   cm 8.76   cm
Median of the strain means8.79   cm 8.88   cm
SD of the strain means± 0.795 ± 0.747
Coefficient of variation (CV)0.0914 0.0853
Min–max range of strain means7.28   –   11.2   cm 7.20   –   11.0   cm
Mean sample size per strain7.0   mice 6.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.264 1.264 24.1559 < 0.0001
strain 30 203.9969 6.7999 129.9499 < 0.0001
sex:strain 30 4.763 0.1588 3.0342 < 0.0001
Residuals 344 18.0005 0.0523


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 8.8 0.177   8 0.0627 0.0201 8.5, 9.0 0.13
129S1/SvImJ m 9.0 0.412   7 0.156 0.0458 8.2, 9.4 0.31
A/J f 8.61 0.21   8 0.0743 0.0244 8.3, 9.0 -0.11
A/J m 8.81 0.259   8 0.0915 0.0294 8.5, 9.2 0.06
AKR/J f 9.58 0.117   6 0.0477 0.0122 9.5, 9.8 1.11
AKR/J m 9.6 0.158   5 0.0707 0.0165 9.4, 9.8 1.12
BALB/cByJ f 9.02 0.147   6 0.0601 0.0163 8.9, 9.3 0.4
BALB/cByJ m 8.92 0.0408   6 0.0167 0.00458 8.9, 9.0 0.21
BTBR T+ Itpr3tf/J f 10.2 0.192   5 0.086 0.0189 10.0, 10.5 1.89
BTBR T+ Itpr3tf/J m 9.91 0.121   7 0.0459 0.0123 9.8, 10.1 1.53
BUB/BnJ f 9.11 0.223   8 0.0789 0.0245 8.9, 9.5 0.52
BUB/BnJ m 8.97 0.275   4 0.138 0.0307 8.7, 9.3 0.27
C3H/HeJ f 9.05 0.151   8 0.0535 0.0167 8.8, 9.2 0.44
C3H/HeJ m 8.97 0.413   6 0.169 0.0461 8.5, 9.5 0.27
C57BL/10J f 8.58 0.205   8 0.0726 0.0239 8.3, 8.8 -0.15
C57BL/10J m 8.98 0.0753   6 0.0307 0.00838 8.9, 9.1 0.29
C57BL/6J f 8.31 0.181   8 0.0639 0.0217 8.0, 8.5 -0.49
C57BL/6J m 8.81 0.0835   8 0.0295 0.00947 8.7, 8.9 0.06
C57BLKS/J f 8.16 0.22   8 0.0778 0.027 7.8, 8.4 -0.68
C57BLKS/J m 8.54 0.207   8 0.073 0.0242 8.2, 8.8 -0.3
C57BR/cdJ f 9.06 0.151   7 0.0571 0.0167 8.9, 9.3 0.45
C57BR/cdJ m 8.88 0.542   6 0.221 0.061 7.8, 9.3 0.15
C57L/J f 8.86 0.172   7 0.0649 0.0194 8.6, 9.1 0.2
C57L/J m 9.26 0.182   5 0.0812 0.0196 9.1, 9.5 0.66
CAST/EiJ f 7.28 0.0753   6 0.0307 0.0103 7.2, 7.4 -1.79
CAST/EiJ m 7.34 0.172   7 0.0649 0.0234 7.0, 7.5 -1.91
CBA/J f 8.79 0.164   8 0.0581 0.0187 8.5, 9.0 0.11
CBA/J m 8.88 0.189   4 0.0946 0.0213 8.6, 9.0 0.15
DBA/2J f 8.9 0.235   5 0.105 0.0264 8.5, 9.1 0.25
DBA/2J m 9.1 0.2   7 0.0756 0.022 8.8, 9.4 0.45
FVB/NJ f 8.64 0.0916   8 0.0324 0.0106 8.5, 8.8 -0.07
FVB/NJ m 8.68 0.542   6 0.221 0.0624 7.6, 9.1 -0.11
KK/HlJ f 8.88 0.189   4 0.0946 0.0213 8.6, 9.0 0.23
KK/HlJ m 8.9 0.289   7 0.109 0.0324 8.5, 9.4 0.18
LP/J f 8.22 0.183   6 0.0749 0.0223 8.0, 8.4 -0.6
LP/J m 8.24 0.106   8 0.0375 0.0129 8.1, 8.4 -0.7
MOLF/EiJ f 7.43 0.229   7 0.0865 0.0308 7.1, 7.7 -1.6
MOLF/EiJ m 7.2 0.183   7 0.069 0.0254 6.9, 7.4 -2.09
MRL/MpJ f 11.2 0.153   3 0.0882 0.0136 11.1, 11.4 3.15
MRL/MpJ m 11.0 0.107   7 0.0404 0.00973 10.8, 11.1 2.99
NOD.B10Sn-H2b/J f 9.46 0.277   8 0.0981 0.0293 9.0, 9.8 0.96
NON/ShiLtJ f 9.17 0.205   8 0.0726 0.0224 8.8, 9.4 0.59
NON/ShiLtJ m 9.31 0.279   7 0.106 0.03 8.7, 9.5 0.73
NZW/LacJ f 9.26 0.192   8 0.068 0.0208 8.9, 9.5 0.71
NZW/LacJ m 9.16 0.27   5 0.121 0.0295 8.8, 9.5 0.53
P/J f 8.82 0.0753   6 0.0307 0.00854 8.7, 8.9 0.15
P/J m 8.87 0.163   6 0.0667 0.0184 8.6, 9.0 0.14
PL/J f 8.09 0.203   8 0.0718 0.0251 7.8, 8.4 -0.77
PL/J m 8.4 0.12   8 0.0423 0.0142 8.2, 8.5 -0.49
PWD/PhJ f 8.3 0.158   5 0.0707 0.019 8.1, 8.5 -0.5
PWD/PhJ m 8.4 0.183   4 0.0913 0.0217 8.2, 8.6 -0.49
RIIIS/J f 8.01 0.136   8 0.0479 0.0169 7.9, 8.3 -0.87
RIIIS/J m 8.25 0.187   6 0.0764 0.0227 8.0, 8.5 -0.69
SJL/J f 8.04 0.141   8 0.0498 0.0175 7.8, 8.3 -0.83
SJL/J m 8.08 0.194   6 0.0792 0.024 7.8, 8.3 -0.92
SM/J f 8.12 0.249   8 0.0881 0.0307 7.7, 8.5 -0.73
SM/J m 8.45 0.185   8 0.0655 0.0219 8.1, 8.7 -0.42
SWR/J f 8.3 0.155   6 0.0632 0.0187 8.2, 8.6 -0.5
SWR/J m 8.75 0.288   6 0.118 0.0329 8.5, 9.2 -0.02
WSB/EiJ f 7.42 0.172   6 0.0703 0.0232 7.1, 7.6 -1.61
WSB/EiJ m 7.28 0.655   6 0.268 0.09 6.0, 7.8 -1.99


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 8.8 0.0809 8.9591 8.6409
129S1/SvImJ m 9.0 0.0865 9.1701 8.8299
A/J f 8.6125 0.0809 8.7716 8.4534
A/J m 8.8125 0.0809 8.9716 8.6534
AKR/J f 9.5833 0.0934 9.767 9.3997
AKR/J m 9.6 0.1023 9.8012 9.3988
BALB/cByJ f 9.0167 0.0934 9.2003 8.833
BALB/cByJ m 8.9167 0.0934 9.1003 8.733
BTBR T+ Itpr3tf/J f 10.18 0.1023 10.3812 9.9788
BTBR T+ Itpr3tf/J m 9.9143 0.0865 10.0843 9.7442
BUB/BnJ f 9.1125 0.0809 9.2716 8.9534
BUB/BnJ m 8.975 0.1144 9.2 8.75
C3H/HeJ f 9.05 0.0809 9.2091 8.8909
C3H/HeJ m 8.9667 0.0934 9.1503 8.783
C57BL/10J f 8.575 0.0809 8.7341 8.4159
C57BL/10J m 8.9833 0.0934 9.167 8.7997
C57BL/6J f 8.3125 0.0809 8.4716 8.1534
C57BL/6J m 8.8125 0.0809 8.9716 8.6534
C57BLKS/J f 8.1625 0.0809 8.3216 8.0034
C57BLKS/J m 8.5375 0.0809 8.6966 8.3784
C57BR/cdJ f 9.0571 0.0865 9.2272 8.8871
C57BR/cdJ m 8.8833 0.0934 9.067 8.6997
C57L/J f 8.8571 0.0865 9.0272 8.6871
C57L/J m 9.26 0.1023 9.4612 9.0588
CAST/EiJ f 7.2833 0.0934 7.467 7.0997
CAST/EiJ m 7.3429 0.0865 7.5129 7.1728
CBA/J f 8.7875 0.0809 8.9466 8.6284
CBA/J m 8.875 0.1144 9.1 8.65
DBA/2J f 8.9 0.1023 9.1012 8.6988
DBA/2J m 9.1 0.0865 9.2701 8.9299
FVB/NJ f 8.6375 0.0809 8.7966 8.4784
FVB/NJ m 8.6833 0.0934 8.867 8.4997
KK/HlJ f 8.875 0.1144 9.1 8.65
KK/HlJ m 8.9 0.0865 9.0701 8.7299
LP/J f 8.2167 0.0934 8.4003 8.033
LP/J m 8.2375 0.0809 8.3966 8.0784
MOLF/EiJ f 7.4286 0.0865 7.5986 7.2585
MOLF/EiJ m 7.2 0.0865 7.3701 7.0299
MRL/MpJ f 11.2333 0.1321 11.4931 10.9736
MRL/MpJ m 10.9857 0.0865 11.1558 10.8157
NOD.B10Sn-H2b/J f 9.4625 0.0809 9.6216 9.3034
NOD.B10Sn-H2b/J m 9.15 0.1618 9.4681 8.8319
NON/ShiLtJ f 9.175 0.0809 9.3341 9.0159
NON/ShiLtJ m 9.3143 0.0865 9.4843 9.1442
NZW/LacJ f 9.2625 0.0809 9.4216 9.1034
NZW/LacJ m 9.16 0.1023 9.3612 8.9588
P/J f 8.8167 0.0934 9.0003 8.633
P/J m 8.8667 0.0934 9.0503 8.683
PL/J f 8.0875 0.0809 8.2466 7.9284
PL/J m 8.4 0.0809 8.5591 8.2409
PWD/PhJ f 8.3 0.1023 8.5012 8.0988
PWD/PhJ m 8.4 0.1144 8.625 8.175
RIIIS/J f 8.0125 0.0809 8.1716 7.8534
RIIIS/J m 8.25 0.0934 8.4337 8.0663
SJL/J f 8.0375 0.0809 8.1966 7.8784
SJL/J m 8.0833 0.0934 8.267 7.8997
SM/J f 8.125 0.0809 8.2841 7.9659
SM/J m 8.45 0.0809 8.6091 8.2909
SWR/J f 8.3 0.0934 8.4837 8.1163
SWR/J m 8.75 0.0934 8.9337 8.5663
WSB/EiJ f 7.4167 0.0934 7.6003 7.233
WSB/EiJ m 7.2833 0.0934 7.467 7.0997


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 8.9 0.0592 9.0164 8.7836
A/J both 8.7125 0.0572 8.825 8.6
AKR/J both 9.5917 0.0693 9.7279 9.4554
BALB/cByJ both 8.9667 0.066 9.0965 8.8368
BTBR T+ Itpr3tf/J both 10.0471 0.067 10.1789 9.9154
BUB/BnJ both 9.0438 0.07 9.1815 8.906
C3H/HeJ both 9.0083 0.0618 9.1298 8.8868
C57BL/10J both 8.7792 0.0618 8.9007 8.6577
C57BL/6J both 8.5625 0.0572 8.675 8.45
C57BLKS/J both 8.35 0.0572 8.4625 8.2375
C57BR/cdJ both 8.9702 0.0636 9.0954 8.8451
C57L/J both 9.0586 0.067 9.1903 8.9268
CAST/EiJ both 7.3131 0.0636 7.4383 7.1879
CBA/J both 8.8313 0.07 8.969 8.6935
DBA/2J both 9.0 0.067 9.1317 8.8683
FVB/NJ both 8.6604 0.0618 8.7819 8.5389
KK/HlJ both 8.8875 0.0717 9.0285 8.7465
LP/J both 8.2271 0.0618 8.3486 8.1056
MOLF/EiJ both 7.3143 0.0611 7.4345 7.194
MRL/MpJ both 11.1095 0.0789 11.2648 10.9543
NOD.B10Sn-H2b/J both 9.3063 0.0904 9.4841 9.1284
NON/ShiLtJ both 9.2446 0.0592 9.3611 9.1282
NZW/LacJ both 9.2113 0.0652 9.3395 9.083
P/J both 8.8417 0.066 8.9715 8.7118
PL/J both 8.2438 0.0572 8.3562 8.1313
PWD/PhJ both 8.35 0.0767 8.5009 8.1991
RIIIS/J both 8.1313 0.0618 8.2527 8.0098
SJL/J both 8.0604 0.0618 8.1819 7.9389
SM/J both 8.2875 0.0572 8.4 8.175
SWR/J both 8.525 0.066 8.6549 8.3951
WSB/EiJ both 7.35 0.066 7.4799 7.2201




  GWAS USING LINEAR MIXED MODELS