Project measure / variable:   Yuan3   TP_M06

ID, description, units MPD:24456   TP_M06   total protein (plasma TP)   [g/dL]  at age 6mo  
Data set, strains Yuan3   inbred   31 strains     sex: both     age: 26wks
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  STRAIN COMPARISON PLOT
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Yuan3 - total protein (plasma TP) at age 6mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested29 strains27 strains
Mean of the strain means6.13   g/dL 6.22   g/dL
Median of the strain means6.13   g/dL 6.21   g/dL
SD of the strain means± 0.331 ± 0.288
Coefficient of variation (CV)0.0540 0.0463
Min–max range of strain means5.53   –   6.83   g/dL 5.74   –   6.91   g/dL
Mean sample size per strain7.5   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0525 0.0525 0.7803 0.3777
strain 24 24.7139 1.0297 15.3083 < 0.0001
sex:strain 24 6.9903 0.2913 4.33 < 0.0001
Residuals 344 23.1399 0.0673


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 5.72 0.365   8 0.129 0.0638 5.4, 6.4 -1.24
129S1/SvImJ m 6.23 0.385   8 0.136 0.0618 5.6, 6.7 0.03
A/J f 6.16 0.172   7 0.0649 0.0279 5.9, 6.4 0.09
A/J m 6.0 0.207   8 0.0732 0.0345 5.7, 6.3 -0.77
AKR/J f 6.27 0.125   7 0.0474 0.02 6.1, 6.5 0.43
BALB/cByJ f 5.77 0.175   8 0.062 0.0303 5.5, 6.1 -1.09
BALB/cByJ m 5.74 0.16   8 0.0565 0.0279 5.5, 6.0 -1.68
BTBR T+ Itpr3tf/J f 6.75 0.16   8 0.0567 0.0238 6.6, 7.0 1.88
BTBR T+ Itpr3tf/J m 6.35 0.251   8 0.0886 0.0395 5.9, 6.7 0.44
BUB/BnJ f 6.42 0.365   8 0.129 0.0569 6.0, 7.1 0.88
BUB/BnJ m 6.16 0.358   8 0.127 0.0581 5.4, 6.6 -0.22
C3H/HeJ f 5.94 0.0916   8 0.0324 0.0154 5.8, 6.1 -0.57
C3H/HeJ m 5.88 0.295   16 0.0737 0.0501 5.4, 6.5 -1.19
C57BL/10J f 6.29 0.125   8 0.0441 0.0198 6.1, 6.4 0.49
C57BL/10J m 6.19 0.21   8 0.0743 0.0339 5.9, 6.6 -0.11
C57BL/6J f 5.82 0.189   4 0.0946 0.0325 5.7, 6.1 -0.93
C57BL/6J m 5.85 0.212   2   0.15 0.0363 5.7, 6.0 -1.29
C57BLKS/J f 6.01 0.136   8 0.0479 0.0226 5.8, 6.2 -0.36
C57BLKS/J m 5.89 0.247   8 0.0875 0.042 5.5, 6.2 -1.15
C57BR/cdJ f 6.28 0.149   8 0.0526 0.0237 6.1, 6.5 0.46
C57BR/cdJ m 6.35 0.22   8 0.0779 0.0347 6.0, 6.6 0.44
CAST/EiJ f 5.53 0.575   6 0.235 0.104 4.8, 6.2 -1.81
CBA/J m 5.9 0.227   8 0.0802 0.0384 5.7, 6.4 -1.12
DBA/2J f 5.59 0.146   8 0.0515 0.0261 5.3, 5.7 -1.63
DBA/2J m 6.0 0.191   7 0.0724 0.0319 5.8, 6.3 -0.77
FVB/NJ f 6.1 0.273   8 0.0964 0.0447 5.7, 6.6 -0.09
FVB/NJ m 6.41 0.455   8 0.161 0.0709 5.6, 7.2 0.65
KK/HlJ f 6.14 0.444   8 0.157 0.0723 5.3, 6.7 0.03
LP/J f 6.0 0.255   5 0.114 0.0425 5.7, 6.3 -0.39
LP/J m 5.89 0.217   8 0.0766 0.0368 5.6, 6.2 -1.15
MOLF/EiJ f 5.85 0.238   4 0.119 0.0407 5.6, 6.1 -0.84
MOLF/EiJ m 5.97 0.189   7 0.0714 0.0316 5.7, 6.3 -0.88
MRL/MpJ m 6.91 0.28   8 0.099 0.0405 6.5, 7.3 2.39
NOD.B10Sn-H2b/J f 6.83 0.335   9 0.112 0.0491 6.4, 7.2 2.12
NOD.B10Sn-H2b/J m 6.59 0.195   7 0.0738 0.0296 6.4, 6.9 1.28
NON/ShiLtJ f 6.44 0.302   8 0.107 0.0469 5.9, 6.9 0.94
NON/ShiLtJ m 6.21 0.304   8 0.108 0.049 5.7, 6.5 -0.04
NZO/HlLtJ f 6.78 0.167   8 0.059 0.0246 6.6, 7.1 1.97
NZO/HlLtJ m 6.56 0.256   8 0.0905 0.039 6.1, 6.9 1.17
NZW/LacJ f 5.99 0.236   8 0.0833 0.0394 5.6, 6.3 -0.42
NZW/LacJ m 6.39 0.242   8 0.0854 0.0378 6.1, 6.8 0.58
P/J f 5.76 0.272   8 0.0962 0.0472 5.2, 6.1 -1.12
PL/J f 6.29 0.186   7 0.0705 0.0297 6.1, 6.5 0.49
PL/J m 6.36 0.244   14 0.0651 0.0383 6.0, 6.9 0.48
PWD/PhJ f 5.99 0.181   8 0.0639 0.0302 5.7, 6.2 -0.42
PWD/PhJ m 6.18 0.104   8 0.0366 0.0168 6.0, 6.3 -0.15
RIIIS/J f 6.42 0.42   8 0.149 0.0654 6.0, 7.1 0.88
RIIIS/J m 6.19 0.242   8 0.0854 0.0391 5.9, 6.5 -0.11
SJL/J f 6.21 0.295   8 0.104 0.0475 5.7, 6.5 0.24
SJL/J m 6.22 0.488   6 0.199 0.0784 5.5, 6.9 -0.01
SM/J f 6.13 0.265   16 0.0663 0.0432 5.7, 6.7 0.0
SM/J m 6.55 0.312   8 0.11 0.0476 6.1, 7.0 1.14
SWR/J f 6.27 0.255   8 0.0901 0.0406 5.8, 6.6 0.43
SWR/J m 6.36 0.272   8 0.0962 0.0428 6.0, 6.9 0.48
WSB/EiJ f 6.0 0.187   5 0.0837 0.0312 5.7, 6.2 -0.39
WSB/EiJ m 6.68 0.147   6 0.0601 0.022 6.5, 6.9 1.59


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 5.725 0.0917 5.9054 5.5446
129S1/SvImJ m 6.225 0.0917 6.4054 6.0446
A/J f 6.1571 0.098 6.35 5.9643
A/J m 6.0 0.0917 6.1804 5.8196
BALB/cByJ f 5.775 0.0917 5.9554 5.5946
BALB/cByJ m 5.7375 0.0917 5.9179 5.5571
BTBR T+ Itpr3tf/J f 6.75 0.0917 6.9304 6.5696
BTBR T+ Itpr3tf/J m 6.35 0.0917 6.5304 6.1696
BUB/BnJ f 6.425 0.0917 6.6054 6.2446
BUB/BnJ m 6.1625 0.0917 6.3429 5.9821
C3H/HeJ f 5.9375 0.0917 6.1179 5.7571
C3H/HeJ m 5.8812 0.0648 6.0088 5.7537
C57BL/10J f 6.2875 0.0917 6.4679 6.1071
C57BL/10J m 6.1875 0.0917 6.3679 6.0071
C57BL/6J f 5.825 0.1297 6.0801 5.5699
C57BL/6J m 5.85 0.1834 6.2107 5.4893
C57BLKS/J f 6.0125 0.0917 6.1929 5.8321
C57BLKS/J m 5.8875 0.0917 6.0679 5.7071
C57BR/cdJ f 6.275 0.0917 6.4554 6.0946
C57BR/cdJ m 6.35 0.0917 6.5304 6.1696
DBA/2J f 5.5875 0.0917 5.7679 5.4071
DBA/2J m 6.0 0.098 6.1928 5.8072
FVB/NJ f 6.1 0.0917 6.2804 5.9196
FVB/NJ m 6.4125 0.0917 6.5929 6.2321
LP/J f 6.0 0.116 6.2281 5.7719
LP/J m 5.8875 0.0917 6.0679 5.7071
MOLF/EiJ f 5.85 0.1297 6.1051 5.5949
MOLF/EiJ m 5.9714 0.098 6.1642 5.7786
NOD.B10Sn-H2b/J f 6.8333 0.0865 7.0034 6.6633
NOD.B10Sn-H2b/J m 6.5857 0.098 6.7785 6.3929
NON/ShiLtJ f 6.4375 0.0917 6.6179 6.2571
NON/ShiLtJ m 6.2125 0.0917 6.3929 6.0321
NZO/HlLtJ f 6.775 0.0917 6.9554 6.5946
NZO/HlLtJ m 6.5625 0.0917 6.7429 6.3821
NZW/LacJ f 5.9875 0.0917 6.1679 5.8071
NZW/LacJ m 6.3875 0.0917 6.5679 6.2071
PL/J f 6.2857 0.098 6.4785 6.0929
PL/J m 6.3643 0.0693 6.5006 6.2279
PWD/PhJ f 5.9875 0.0917 6.1679 5.8071
PWD/PhJ m 6.175 0.0917 6.3554 5.9946
RIIIS/J f 6.425 0.0917 6.6054 6.2446
RIIIS/J m 6.1875 0.0917 6.3679 6.0071
SJL/J f 6.2125 0.0917 6.3929 6.0321
SJL/J m 6.2167 0.1059 6.4249 6.0084
SM/J f 6.1313 0.0648 6.2588 6.0037
SM/J m 6.55 0.0917 6.7304 6.3696
SWR/J f 6.275 0.0917 6.4554 6.0946
SWR/J m 6.3625 0.0917 6.5429 6.1821
WSB/EiJ f 6.0 0.116 6.2281 5.7719
WSB/EiJ m 6.6833 0.1059 6.8916 6.4751


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 5.975 0.0648 6.1025 5.8475
A/J both 6.0786 0.0671 6.2106 5.9466
BALB/cByJ both 5.7563 0.0648 5.8838 5.6287
BTBR T+ Itpr3tf/J both 6.55 0.0648 6.6775 6.4225
BUB/BnJ both 6.2937 0.0648 6.4213 6.1662
C3H/HeJ both 5.9094 0.0562 6.0198 5.7989
C57BL/10J both 6.2375 0.0648 6.365 6.11
C57BL/6J both 5.8375 0.1123 6.0584 5.6166
C57BLKS/J both 5.95 0.0648 6.0775 5.8225
C57BR/cdJ both 6.3125 0.0648 6.44 6.185
DBA/2J both 5.7937 0.0671 5.9258 5.6617
FVB/NJ both 6.2563 0.0648 6.3838 6.1287
LP/J both 5.9437 0.0739 6.0892 5.7983
MOLF/EiJ both 5.9107 0.0813 6.0706 5.7508
NOD.B10Sn-H2b/J both 6.7095 0.0654 6.8381 6.581
NON/ShiLtJ both 6.325 0.0648 6.4525 6.1975
NZO/HlLtJ both 6.6687 0.0648 6.7963 6.5412
NZW/LacJ both 6.1875 0.0648 6.315 6.06
PL/J both 6.325 0.06 6.4431 6.2069
PWD/PhJ both 6.0812 0.0648 6.2088 5.9537
RIIIS/J both 6.3063 0.0648 6.4338 6.1787
SJL/J both 6.2146 0.07 6.3523 6.0768
SM/J both 6.3406 0.0562 6.4511 6.2302
SWR/J both 6.3187 0.0648 6.4463 6.1912
WSB/EiJ both 6.3417 0.0785 6.4961 6.1872




  GWAS USING LINEAR MIXED MODELS