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Project measure / variable:   Petkova1   NK_M06

ID, description, units MPD:24276   NK_M06   natural killer (NK) cells, as percentage of total lymphocytes   [%]  at age 6mo  
Data set, strains Petkova1   inbred   32 strains     sex: both     age: 26wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Petkova1 - natural killer (NK) cells, as percentage of total lymphocytes at age 6mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested32 strains31 strains
Mean of the strain means4.69   % 4.34   %
Median of the strain means4.11   % 4.21   %
SD of the strain means± 2.98 ± 2.89
Coefficient of variation (CV)0.635 0.666
Min–max range of strain means0.540   –   13.1   % 0.631   –   13.7   %
Mean sample size per strain8.0   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 35.6318 35.6318 12.1815 0.0005
strain 30 3638.8203 121.294 41.467 < 0.0001
sex:strain 30 491.4881 16.3829 5.6009 < 0.0001
Residuals 435 1272.4072 2.9251


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 5.55 0.857   8 0.303 0.154 4.37, 6.68 0.29
129S1/SvImJ m 4.66 0.6   8 0.212 0.129 3.86, 5.65 0.11
A/J f 5.39 1.18   8 0.417 0.219 3.64, 6.84 0.23
A/J m 5.83 1.04   8 0.367 0.178 4.72, 7.8 0.52
AKR/J f 8.61 8.04   8 2.84 0.934 3.9, 27.0 1.32
AKR/J m 3.17 0.801   8 0.283 0.253 2.3, 4.91 -0.4
BALB/cByJ f 7.28 0.746   8 0.264 0.103 5.89, 8.51 0.87
BALB/cByJ m 5.03 0.633   8 0.224 0.126 3.98, 5.7 0.24
BTBR T+ Itpr3tf/J f 3.37 0.484   8 0.171 0.143 2.67, 4.0 -0.44
BTBR T+ Itpr3tf/J m 2.36 0.302   8 0.107 0.128 1.95, 2.94 -0.68
BUB/BnJ f 3.37 0.435   8 0.154 0.129 2.72, 3.97 -0.44
BUB/BnJ m 3.29 0.449   8 0.159 0.136 2.86, 4.25 -0.36
C3H/HeJ f 4.77 1.19   8 0.422 0.25 3.56, 6.78 0.03
C3H/HeJ m 5.42 1.66   8 0.588 0.307 3.63, 8.14 0.38
C57BL/10J f 7.11 1.41   8 0.497 0.198 5.09, 8.97 0.81
C57BL/10J m 4.21 0.852   8 0.301 0.203 2.74, 5.29 -0.04
C57BL/6J f 3.75 0.59   8 0.208 0.157 2.65, 4.51 -0.32
C57BL/6J m 4.03 1.06   8 0.376 0.264 2.88, 6.37 -0.11
C57BLKS/J f 2.77 0.717   8 0.253 0.259 1.92, 3.94 -0.65
C57BLKS/J m 4.71 0.769   8 0.272 0.163 3.66, 6.28 0.13
C57BR/cdJ f 4.18 0.74   8 0.262 0.177 3.3, 5.26 -0.17
C57BR/cdJ m 4.22 0.649   8 0.23 0.154 3.68, 5.68 -0.04
C57L/J f 4.03 1.04   8 0.369 0.259 2.67, 5.64 -0.22
C57L/J m 4.45 0.938   8 0.332 0.211 3.29, 6.06 0.04
CAST/EiJ f 1.25 0.391   6 0.159 0.313 0.83, 1.68 -1.16
CBA/J f 3.57 1.08   8 0.382 0.302 2.19, 5.65 -0.38
CBA/J m 7.84 1.19   8 0.421 0.152 5.86, 9.36 1.21
DBA/2J f 2.91 0.611   8 0.216 0.21 2.02, 4.0 -0.6
DBA/2J m 4.46 3.06   8 1.08 0.686 2.92, 12.0 0.04
FVB/NJ f 7.16 1.26   8 0.446 0.176 6.16, 9.65 0.83
FVB/NJ m 3.5 0.903   8 0.319 0.258 2.8, 5.36 -0.29
KK/HlJ f 8.67 1.16   8 0.411 0.134 6.77, 10.3 1.34
KK/HlJ m 5.63 1.05   8 0.371 0.187 4.04, 6.77 0.45
LP/J f 7.08 1.97   8 0.695 0.278 4.69, 9.8 0.8
LP/J m 7.78 3.95   8 1.4 0.508 3.62, 14.1 1.19
MOLF/EiJ f 0.54 0.0712   7 0.0269 0.132 0.43, 0.63 -1.39
MOLF/EiJ m 0.631 0.163   8 0.0576 0.258 0.31, 0.82 -1.28
MRL/MpJ f 4.59 1.04   8 0.366 0.226 2.87, 6.34 -0.03
MRL/MpJ m 3.11 0.693   8 0.245 0.223 2.18, 4.35 -0.42
NOD.B10Sn-H2b/J f 2.37 0.526   9 0.175 0.222 1.45, 3.11 -0.78
NOD.B10Sn-H2b/J m 2.58 0.267   7 0.101 0.104 2.18, 3.01 -0.61
NON/ShiLtJ f 8.42 0.786   8 0.278 0.0933 7.41, 9.84 1.25
NON/ShiLtJ m 10.1 4.26   8 1.51 0.421 4.65, 17.9 2.0
NZO/HlLtJ f 13.1 3.98   8 1.41 0.303 6.13, 19.3 2.82
NZO/HlLtJ m 13.7 3.39   8 1.2 0.247 10.3, 21.1 3.24
NZW/LacJ f 7.92 2.12   8 0.749 0.267 4.28, 10.9 1.08
NZW/LacJ m 8.16 1.03   8 0.366 0.127 6.62, 9.78 1.32
P/J f 5.02 0.91   8 0.322 0.181 3.9, 6.76 0.11
P/J m 0.9 0.191   8 0.0675 0.212 0.7, 1.28 -1.19
PL/J f 0.689 0.181   7 0.0684 0.263 0.47, 0.97 -1.34
PL/J m 0.81 0.0964   7 0.0364 0.119 0.65, 0.95 -1.22
PWD/PhJ f 1.17 0.105   8 0.0373 0.0899 1.05, 1.3 -1.18
PWD/PhJ m 1.59 0.26   8 0.0921 0.164 1.2, 1.94 -0.95
RIIIS/J f 2.29 0.519   8 0.183 0.227 1.53, 2.92 -0.81
RIIIS/J m 2.04 0.255   8 0.0902 0.125 1.77, 2.44 -0.79
SJL/J f 1.62 0.303   8 0.107 0.187 1.09, 2.03 -1.03
SJL/J m 1.18 0.231   6 0.0944 0.196 0.9, 1.51 -1.09
SM/J f 8.29 1.69   16 0.423 0.204 5.3, 11.6 1.21
SM/J m 5.08 0.852   8 0.301 0.168 4.3, 6.9 0.26
SWR/J f 1.72 0.243   8 0.086 0.142 1.28, 2.1 -1.0
SWR/J m 1.48 0.137   8 0.0485 0.0925 1.23, 1.72 -0.99
WSB/EiJ f 1.55 0.301   8 0.106 0.194 1.33, 2.25 -1.05
WSB/EiJ m 2.46 0.284   6 0.116 0.115 2.06, 2.83 -0.65


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 5.555 0.6047 6.7435 4.3665
129S1/SvImJ m 4.66 0.6047 5.8485 3.4715
A/J f 5.3925 0.6047 6.581 4.204
A/J m 5.83 0.6047 7.0185 4.6415
AKR/J f 8.6112 0.6047 9.7997 7.4228
AKR/J m 3.1662 0.6047 4.3547 1.9778
BALB/cByJ f 7.2788 0.6047 8.4672 6.0903
BALB/cByJ m 5.0338 0.6047 6.2222 3.8453
BTBR T+ Itpr3tf/J f 3.3712 0.6047 4.5597 2.1828
BTBR T+ Itpr3tf/J m 2.36 0.6047 3.5485 1.1715
BUB/BnJ f 3.3713 0.6047 4.5597 2.1828
BUB/BnJ m 3.2938 0.6047 4.4822 2.1053
C3H/HeJ f 4.7687 0.6047 5.9572 3.5803
C3H/HeJ m 5.42 0.6047 6.6085 4.2315
C57BL/10J f 7.1125 0.6047 8.301 5.924
C57BL/10J m 4.2075 0.6047 5.396 3.019
C57BL/6J f 3.745 0.6047 4.9335 2.5565
C57BL/6J m 4.025 0.6047 5.2135 2.8365
C57BLKS/J f 2.77 0.6047 3.9585 1.5815
C57BLKS/J m 4.7125 0.6047 5.901 3.524
C57BR/cdJ f 4.1837 0.6047 5.3722 2.9953
C57BR/cdJ m 4.2175 0.6047 5.406 3.029
C57L/J f 4.0263 0.6047 5.2147 2.8378
C57L/J m 4.4513 0.6047 5.6397 3.2628
CBA/J f 3.5712 0.6047 4.7597 2.3828
CBA/J m 7.8375 0.6047 9.026 6.649
DBA/2J f 2.9075 0.6047 4.096 1.719
DBA/2J m 4.4563 0.6047 5.6447 3.2678
FVB/NJ f 7.1588 0.6047 8.3472 5.9703
FVB/NJ m 3.4975 0.6047 4.686 2.309
KK/HlJ f 8.6687 0.6047 9.8572 7.4803
KK/HlJ m 5.63 0.6047 6.8185 4.4415
LP/J f 7.085 0.6047 8.2735 5.8965
LP/J m 7.7838 0.6047 8.9722 6.5953
MOLF/EiJ f 0.54 0.6464 1.8105 0.0
MOLF/EiJ m 0.6313 0.6047 1.8197 0.0
MRL/MpJ f 4.5887 0.6047 5.7772 3.4003
MRL/MpJ m 3.1075 0.6047 4.296 1.919
NOD.B10Sn-H2b/J f 2.3656 0.5701 3.486 1.2451
NOD.B10Sn-H2b/J m 2.5757 0.6464 3.8462 1.3052
NON/ShiLtJ f 8.4238 0.6047 9.6122 7.2353
NON/ShiLtJ m 10.1325 0.6047 11.321 8.944
NZO/HlLtJ f 13.1162 0.6047 14.3047 11.9278
NZO/HlLtJ m 13.7 0.6047 14.8885 12.5115
NZW/LacJ f 7.9188 0.6047 9.1072 6.7303
NZW/LacJ m 8.1613 0.6047 9.3497 6.9728
P/J f 5.02 0.6047 6.2085 3.8315
P/J m 0.9 0.6047 2.0885 0.0
PL/J f 0.6886 0.6464 1.9591 0.0
PL/J m 0.81 0.6464 2.0805 0.0
PWD/PhJ f 1.1725 0.6047 2.361 0.0
PWD/PhJ m 1.5875 0.6047 2.776 0.399
RIIIS/J f 2.2875 0.6047 3.476 1.099
RIIIS/J m 2.035 0.6047 3.2235 0.8465
SJL/J f 1.62 0.6047 2.8085 0.4315
SJL/J m 1.1767 0.6982 2.549 0.0
SM/J f 8.2944 0.4276 9.1347 7.454
SM/J m 5.085 0.6047 6.2735 3.8965
SWR/J f 1.7163 0.6047 2.9047 0.5278
SWR/J m 1.4825 0.6047 2.671 0.294
WSB/EiJ f 1.5525 0.6047 2.741 0.364
WSB/EiJ m 2.4583 0.6982 3.8306 1.086


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 5.1075 0.4276 5.9479 4.2671
A/J both 5.6113 0.4276 6.4516 4.7709
AKR/J both 5.8887 0.4276 6.7291 5.0484
BALB/cByJ both 6.1563 0.4276 6.9966 5.3159
BTBR T+ Itpr3tf/J both 2.8656 0.4276 3.706 2.0253
BUB/BnJ both 3.3325 0.4276 4.1729 2.4921
C3H/HeJ both 5.0944 0.4276 5.9347 4.254
C57BL/10J both 5.66 0.4276 6.5004 4.8196
C57BL/6J both 3.885 0.4276 4.7254 3.0446
C57BLKS/J both 3.7412 0.4276 4.5816 2.9009
C57BR/cdJ both 4.2006 0.4276 5.041 3.3603
C57L/J both 4.2388 0.4276 5.0791 3.3984
CBA/J both 5.7044 0.4276 6.5447 4.864
DBA/2J both 3.6819 0.4276 4.5222 2.8415
FVB/NJ both 5.3281 0.4276 6.1685 4.4878
KK/HlJ both 7.1494 0.4276 7.9897 6.309
LP/J both 7.4344 0.4276 8.2747 6.594
MOLF/EiJ both 0.5856 0.4426 1.4555 0.0
MRL/MpJ both 3.8481 0.4276 4.6885 3.0078
NOD.B10Sn-H2b/J both 2.4706 0.431 3.3176 1.6236
NON/ShiLtJ both 9.2781 0.4276 10.1185 8.4378
NZO/HlLtJ both 13.4081 0.4276 14.2485 12.5678
NZW/LacJ both 8.04 0.4276 8.8804 7.1996
P/J both 2.96 0.4276 3.8004 2.1196
PL/J both 0.7493 0.4571 1.6477 0.0
PWD/PhJ both 1.38 0.4276 2.2204 0.5396
RIIIS/J both 2.1613 0.4276 3.0016 1.3209
SJL/J both 1.3983 0.4618 2.306 0.4906
SM/J both 6.6897 0.3703 7.4175 5.9619
SWR/J both 1.5994 0.4276 2.4397 0.759
WSB/EiJ both 2.0054 0.4618 2.9131 1.0977




  GWAS USING LINEAR MIXED MODELS