Project measure / variable:   Petkova1   CD4_effector_M24

ID, description, units MPD:24249   CD4_effector_M24   CD4 T cells, effector, as percentage of total CD4 T cells   [%]  at age 24mo  
Data set, strains Petkova1   inbred   12 strains     sex: both     age: 104wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Petkova1 - CD4 T cells, effector, as percentage of total CD4 T cells at age 24mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means28.4   % 25.9   %
Median of the strain means25.8   % 27.0   %
SD of the strain means± 11.2 ± 7.93
Coefficient of variation (CV)0.396 0.306
Min–max range of strain means13.9   –   49.6   % 13.5   –   39.3   %
Mean sample size per strain7.0   mice 7.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 23.6191 23.6191 0.2064 0.6504
strain 9 7153.3717 794.8191 6.9458 < 0.0001
sex:strain 9 2116.6866 235.1874 2.0553 0.0388
Residuals 121 13846.1867 114.4313


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 13.9 2.25   6 0.92 0.162 10.7, 16.3 -1.29
129S1/SvImJ m 27.8 5.06   7 1.91 0.182 21.4, 36.7 0.24
BALB/cByJ f 47.4 24.5   7 9.26 0.517 20.5, 86.3 1.7
C3H/HeJ m 13.5 3.83   8 1.36 0.284 8.84, 18.8 -1.57
C57BL/10J f 29.2 15.5   8 5.47 0.53 12.5, 61.1 0.08
C57BL/10J m 34.3 8.29   6 3.38 0.241 25.6, 45.9 1.06
C57BL/6J f 19.5 6.38   8 2.26 0.327 6.26, 24.6 -0.79
C57BL/6J m 31.3 10.4   8 3.67 0.331 21.4, 53.3 0.68
C57BLKS/J f 33.0 3.87   6 1.58 0.117 28.4, 38.7 0.41
C57BLKS/J m 24.5 3.85   7 1.46 0.157 18.5, 29.9 -0.18
C57BR/cdJ f 49.6 4.14   7 1.56 0.0835 42.7, 55.1 1.89
C57BR/cdJ m 39.3 16.1   9 5.37 0.41 23.7, 78.7 1.69
LP/J f 25.4 18.3   8 6.46 0.72 12.4, 66.6 -0.26
LP/J m 30.3 9.78   6 3.99 0.322 20.5, 45.6 0.55
NON/ShiLtJ f 25.8 4.29   8 1.52 0.166 18.6, 31.8 -0.23
NON/ShiLtJ m 27.0 8.6   7 3.25 0.319 14.6, 37.6 0.14
NZW/LacJ f 20.2 20.5   6 8.37 1.02 6.71, 61.5 -0.73
NZW/LacJ m 16.2 5.66   7 2.14 0.35 10.1, 24.7 -1.23
PWD/PhJ f 26.7 8.15   7 3.08 0.305 11.2, 35.8 -0.15
PWD/PhJ m 23.5 14.0   7 5.28 0.594 9.44, 53.8 -0.31
WSB/EiJ f 21.2 11.9   6 4.86 0.562 9.67, 38.4 -0.64
WSB/EiJ m 17.5 7.19   7 2.72 0.412 8.23, 29.2 -1.06


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 13.9333 4.3671 22.5792 5.2874
129S1/SvImJ m 27.7714 4.0432 35.776 19.7669
C57BL/10J f 29.1625 3.7821 36.6501 21.6749
C57BL/10J m 34.3333 4.3671 42.9792 25.6874
C57BL/6J f 19.52 3.7821 27.0076 12.0324
C57BL/6J m 31.3375 3.7821 38.8251 23.8499
C57BLKS/J f 32.9667 4.3671 41.6126 24.3208
C57BLKS/J m 24.5143 4.0432 32.5188 16.5097
C57BR/cdJ f 49.5857 4.0432 57.5903 41.5812
C57BR/cdJ m 39.2778 3.5658 46.3371 32.2184
LP/J f 25.375 3.7821 32.8626 17.8874
LP/J m 30.3333 4.3671 38.9792 21.6874
NON/ShiLtJ f 25.85 3.7821 33.3376 18.3624
NON/ShiLtJ m 26.9857 4.0432 34.9903 18.9812
NZW/LacJ f 20.1517 4.3671 28.7976 11.5058
NZW/LacJ m 16.1857 4.0432 24.1903 8.1812
PWD/PhJ f 26.7143 4.0432 34.7188 18.7097
PWD/PhJ m 23.5486 4.0432 31.5531 15.544
WSB/EiJ f 21.1783 4.3671 29.8242 12.5324
WSB/EiJ m 17.4614 4.0432 25.466 9.4569


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 20.8524 2.9757 26.7436 14.9612
C57BL/10J both 31.7479 2.8886 37.4666 26.0292
C57BL/6J both 25.4287 2.6743 30.7233 20.1342
C57BLKS/J both 28.7405 2.9757 34.6317 22.8493
C57BR/cdJ both 44.4317 2.6955 49.7681 39.0954
LP/J both 27.8542 2.8886 33.5729 22.1354
NON/ShiLtJ both 26.4179 2.7682 31.8982 20.9375
NZW/LacJ both 18.1687 2.9757 24.0599 12.2775
PWD/PhJ both 25.1314 2.859 30.7915 19.4714
WSB/EiJ both 19.3199 2.9757 25.2111 13.4287




  GWAS USING LINEAR MIXED MODELS