Project measure / variable:   Petkova1   B_cells_M18

ID, description, units MPD:24227   B_cells_M18   B cells, as percentage of total lymphocytes   [%]  at age 18mo  
Data set, strains Petkova1   inbred   30 strains     sex: both     age: 78wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Petkova1 - B cells, as percentage of total lymphocytes at age 18mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested29 strains25 strains
Mean of the strain means39.8   % 42.6   %
Median of the strain means37.7   % 39.1   %
SD of the strain means± 16.2 ± 18.8
Coefficient of variation (CV)0.408 0.441
Min–max range of strain means10.7   –   76.5   % 8.56   –   74.7   %
Mean sample size per strain7.3   mice 6.7   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 625.1644 625.1644 5.184 0.0236
strain 22 80088.3321 3640.3787 30.1871 < 0.0001
sex:strain 22 9984.3091 453.8322 3.7633 < 0.0001
Residuals 278 33525.1068 120.5939


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 26.8 5.85   7 2.21 0.218 18.3, 37.6 -0.8
129S1/SvImJ m 32.1 4.06   8 1.44 0.127 23.9, 37.0 -0.56
A/J f 29.6 10.8   8 3.83 0.365 13.5, 50.4 -0.63
BALB/cByJ f 48.0 25.5   8 9.03 0.532 2.15, 93.5 0.51
BALB/cByJ m 39.0 12.9   6 5.28 0.331 14.8, 53.8 -0.19
BTBR T+ Itpr3tf/J f 23.0 6.38   8 2.26 0.277 12.9, 31.5 -1.03
BTBR T+ Itpr3tf/J m 28.1 5.56   5 2.49 0.198 21.1, 34.9 -0.77
BUB/BnJ f 37.6 19.8   8 7.0 0.527 6.28, 65.0 -0.13
BUB/BnJ m 54.4 5.2   6 2.12 0.0956 45.2, 59.0 0.63
C3H/HeJ f 37.4 7.79   8 2.75 0.208 27.7, 48.0 -0.15
C3H/HeJ m 33.5 11.4   8 4.03 0.34 18.0, 57.6 -0.49
C57BL/10J f 72.2 19.2   7 7.28 0.266 29.1, 82.7 2.0
C57BL/10J m 73.3 0.0   1   0.0 0.0 73.3, 73.3 1.63
C57BL/6J f 76.5 7.81   8 2.76 0.102 61.0, 84.3 2.27
C57BL/6J m 74.7 18.8   7 7.12 0.252 33.2, 87.8 1.71
C57BLKS/J f 60.9 12.6   7 4.78 0.208 35.6, 73.0 1.3
C57BR/cdJ f 32.2 12.0   8 4.25 0.374 4.4, 43.2 -0.47
C57BR/cdJ m 54.1 5.87   8 2.07 0.109 43.6, 62.0 0.61
C57L/J f 58.3 21.1   8 7.46 0.362 13.4, 85.4 1.14
C57L/J m 69.6 5.14   6 2.1 0.0738 60.8, 74.6 1.44
CBA/J f 25.4 12.7   8 4.49 0.501 5.9, 42.3 -0.89
CBA/J m 50.8 3.43   6 1.4 0.0675 46.3, 56.5 0.43
DBA/2J f 59.0 6.91   7 2.61 0.117 47.9, 69.2 1.19
DBA/2J m 56.5 11.2   8 3.95 0.197 38.9, 72.1 0.74
FVB/NJ f 32.9 9.56   8 3.38 0.291 17.3, 45.6 -0.42
KK/HlJ f 26.8 9.29   7 3.51 0.346 10.4, 34.9 -0.8
KK/HlJ m 37.3 7.34   7 2.77 0.197 29.2, 48.0 -0.28
LP/J f 37.7 7.09   7 2.68 0.188 29.3, 49.0 -0.13
LP/J m 21.9 2.83   8 1.0 0.129 17.9, 25.5 -1.1
MOLF/EiJ f 41.5 5.33   9 1.78 0.128 33.6, 49.6 0.11
MOLF/EiJ m 41.9 5.75   7 2.17 0.137 33.9, 48.3 -0.04
MRL/MpJ f 20.1 13.7   6 5.58 0.681 9.5, 46.4 -1.21
MRL/MpJ m 8.56 3.75   8 1.33 0.438 2.16, 13.0 -1.81
NOD.B10Sn-H2b/J f 17.3 6.89   7 2.6 0.397 10.1, 27.8 -1.39
NOD.B10Sn-H2b/J m 23.7 4.51   6 1.84 0.19 19.5, 31.6 -1.01
NON/ShiLtJ f 58.2 11.7   7 4.43 0.201 34.4, 69.6 1.14
NON/ShiLtJ m 64.1 4.71   7 1.78 0.0736 58.0, 72.8 1.14
NZO/HlLtJ f 40.4 24.7   3 14.2 0.611 12.2, 58.1 0.04
NZW/LacJ f 24.6 13.1   8 4.64 0.532 1.8, 40.4 -0.94
NZW/LacJ m 31.5 8.98   7 3.4 0.285 23.0, 47.2 -0.59
P/J f 43.2 22.2   5 9.93 0.514 17.1, 66.4 0.21
P/J m 59.8 15.6   4 7.79 0.26 44.7, 78.3 0.91
PL/J f 10.7 3.0   4 1.5 0.281 7.31, 14.3 -1.79
PL/J m 18.7 3.59   5 1.61 0.192 14.2, 23.1 -1.27
PWD/PhJ f 48.7 7.11   8 2.51 0.146 37.6, 59.4 0.55
PWD/PhJ m 60.7 9.38   8 3.32 0.154 40.6, 72.2 0.96
RIIIS/J m 36.1 9.57   8 3.38 0.265 24.6, 49.3 -0.35
SJL/J f 27.2 16.7   8 5.9 0.613 2.28, 53.6 -0.78
SJL/J m 10.8 8.96   7 3.39 0.83 3.31, 28.8 -1.69
SM/J f 46.6 16.2   7 6.13 0.348 18.1, 69.8 0.42
SWR/J f 47.9 9.22   7 3.49 0.193 33.1, 55.4 0.5
SWR/J m 39.1 7.95   6 3.25 0.204 33.5, 54.3 -0.19
WSB/EiJ f 42.5 11.8   8 4.19 0.278 31.2, 69.2 0.17
WSB/EiJ m 45.4 3.79   7 1.43 0.0835 38.9, 49.9 0.15


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 26.7857 4.1506 34.9564 18.6151
129S1/SvImJ m 32.1 3.8826 39.7429 24.4571
BALB/cByJ f 47.9937 3.8826 55.6367 40.3508
BALB/cByJ m 39.0333 4.4832 47.8586 30.208
BTBR T+ Itpr3tf/J f 23.025 3.8826 30.6679 15.3821
BTBR T+ Itpr3tf/J m 28.12 4.9111 37.7876 18.4524
BUB/BnJ f 37.585 3.8826 45.2279 29.9421
BUB/BnJ m 54.3667 4.4832 63.192 45.5414
C3H/HeJ f 37.4125 3.8826 45.0554 29.7696
C3H/HeJ m 33.55 3.8826 41.1929 25.9071
C57BL/6J f 76.475 3.8826 84.1179 68.8321
C57BL/6J m 74.6571 4.1506 82.8278 66.4865
C57BR/cdJ f 32.175 3.8826 39.8179 24.5321
C57BR/cdJ m 54.0875 3.8826 61.7304 46.4446
C57L/J f 58.3125 3.8826 65.9554 50.6696
C57L/J m 69.6333 4.4832 78.4586 60.808
CBA/J f 25.3625 3.8826 33.0054 17.7196
CBA/J m 50.8333 4.4832 59.6586 42.008
DBA/2J f 59.0143 4.1506 67.1849 50.8436
DBA/2J m 56.5375 3.8826 64.1804 48.8946
KK/HlJ f 26.8286 4.1506 34.9992 18.6579
KK/HlJ m 37.2571 4.1506 45.4278 29.0865
LP/J f 37.7 4.1506 45.8706 29.5294
LP/J m 21.8875 3.8826 29.5304 14.2446
MOLF/EiJ f 41.5 3.6605 48.7058 34.2942
MOLF/EiJ m 41.9143 4.1506 50.0849 33.7436
MRL/MpJ f 20.0667 4.4832 28.892 11.2414
MRL/MpJ m 8.5612 3.8826 16.2042 0.9183
NOD.B10Sn-H2b/J f 17.3429 4.1506 25.5135 9.1722
NOD.B10Sn-H2b/J m 23.7 4.4832 32.5253 14.8747
NON/ShiLtJ f 58.2 4.1506 66.3706 50.0294
NON/ShiLtJ m 64.0571 4.1506 72.2278 55.8865
NZW/LacJ f 24.6375 3.8826 32.2804 16.9946
NZW/LacJ m 31.5 4.1506 39.6706 23.3294
P/J f 43.18 4.9111 52.8476 33.5124
P/J m 59.8 5.4908 70.6088 48.9912
PL/J f 10.6875 5.4908 21.4963 0.0
PL/J m 18.68 4.9111 28.3476 9.0124
PWD/PhJ f 48.725 3.8826 56.3679 41.0821
PWD/PhJ m 60.7375 3.8826 68.3804 53.0946
SJL/J f 27.2225 3.8826 34.8654 19.5796
SJL/J m 10.8029 4.1506 18.9735 2.6322
SWR/J f 47.9 4.1506 56.0706 39.7294
SWR/J m 39.05 4.4832 47.8753 30.2247
WSB/EiJ f 42.525 3.8826 50.1679 34.8821
WSB/EiJ m 45.3571 4.1506 53.5278 37.1865


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 29.4429 2.8417 35.0369 23.8488
BALB/cByJ both 43.5135 2.9654 49.3509 37.6761
BTBR T+ Itpr3tf/J both 25.5725 3.1302 31.7344 19.4106
BUB/BnJ both 45.9758 2.9654 51.8132 40.1384
C3H/HeJ both 35.4813 2.7454 40.8856 30.0769
C57BL/6J both 75.5661 2.8417 81.1601 69.972
C57BR/cdJ both 43.1313 2.7454 48.5356 37.7269
C57L/J both 63.9729 2.9654 69.8103 58.1355
CBA/J both 38.0979 2.9654 43.9353 32.2605
DBA/2J both 57.7759 2.8417 63.37 52.1818
KK/HlJ both 32.0429 2.9349 37.8204 26.2653
LP/J both 29.7938 2.8417 35.3878 24.1997
MOLF/EiJ both 41.7071 2.7671 47.1542 36.26
MRL/MpJ both 14.314 2.9654 20.1514 8.4766
NOD.B10Sn-H2b/J both 20.5214 3.0548 26.5349 14.508
NON/ShiLtJ both 61.1286 2.9349 66.9061 55.351
NZW/LacJ both 28.0687 2.8417 33.6628 22.4747
P/J both 51.49 3.6833 58.7407 44.2393
PL/J both 14.6837 3.6833 21.9345 7.433
PWD/PhJ both 54.7313 2.7454 60.1356 49.3269
SJL/J both 19.0127 2.8417 24.6067 13.4186
SWR/J both 43.475 3.0548 49.4884 37.4616
WSB/EiJ both 43.9411 2.8417 49.5351 38.347




  GWAS USING LINEAR MIXED MODELS