Project measure / variable:   Petkova1   B_cells_M06

ID, description, units MPD:24225   B_cells_M06   B cells, as percentage of total lymphocytes   [%]  at age 6mo  
Data set, strains Petkova1   inbred   32 strains     sex: both     age: 26wks
Procedure immune cell quantification
Ontology mappings

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  STRAIN COMPARISON PLOT
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Petkova1 - B cells, as percentage of total lymphocytes at age 6mo



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested32 strains31 strains
Mean of the strain means46.6   % 49.3   %
Median of the strain means46.6   % 50.4   %
SD of the strain means± 19.2 ± 18.9
Coefficient of variation (CV)0.412 0.383
Min–max range of strain means7.00   –   83.6   % 17.4   –   82.0   %
Mean sample size per strain7.9   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1876.7386 1876.7386 39.5037 < 0.0001
strain 30 149363.4477 4978.7816 104.7991 < 0.0001
sex:strain 30 20888.1535 696.2718 14.6559 < 0.0001
Residuals 434 20618.4146 47.5079


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 61.0 16.7   8 5.9 0.274 22.6, 72.8 0.75
129S1/SvImJ m 69.5 4.46   8 1.58 0.0641 62.7, 74.3 1.07
A/J f 57.2 14.0   8 4.94 0.245 29.0, 77.7 0.55
A/J m 62.0 8.75   8 3.09 0.141 49.3, 75.0 0.67
AKR/J f 49.1 13.3   8 4.7 0.271 23.2, 64.0 0.13
AKR/J m 56.1 6.62   8 2.34 0.118 42.0, 62.3 0.36
BALB/cByJ f 45.4 5.55   8 1.96 0.122 38.1, 53.4 -0.06
BALB/cByJ m 45.0 10.0   8 3.55 0.223 34.8, 66.9 -0.23
BTBR T+ Itpr3tf/J f 25.1 4.69   8 1.66 0.187 18.6, 31.9 -1.12
BTBR T+ Itpr3tf/J m 31.3 5.3   8 1.87 0.169 23.0, 38.4 -0.95
BUB/BnJ f 62.9 4.54   8 1.61 0.0722 58.1, 72.3 0.85
BUB/BnJ m 74.8 7.86   8 2.78 0.105 57.2, 82.3 1.35
C3H/HeJ f 35.2 1.58   8 0.557 0.0448 32.5, 37.8 -0.59
C3H/HeJ m 43.0 10.4   8 3.68 0.242 28.3, 62.9 -0.33
C57BL/10J f 83.6 2.25   8 0.797 0.027 80.8, 86.4 1.93
C57BL/10J m 77.7 4.04   8 1.43 0.052 69.6, 82.1 1.51
C57BL/6J f 68.1 5.73   8 2.03 0.0842 61.2, 79.5 1.12
C57BL/6J m 82.0 4.72   8 1.67 0.0576 73.3, 87.2 1.73
C57BLKS/J f 62.2 4.92   8 1.74 0.0792 54.3, 70.0 0.81
C57BLKS/J m 54.1 6.63   8 2.34 0.123 44.1, 65.1 0.26
C57BR/cdJ f 47.1 7.8   8 2.76 0.166 35.6, 58.5 0.03
C57BR/cdJ m 60.8 4.02   8 1.42 0.0661 55.4, 66.3 0.61
C57L/J f 68.3 6.12   8 2.16 0.0896 60.0, 75.7 1.13
C57L/J m 77.0 4.96   8 1.75 0.0645 68.2, 84.8 1.47
CAST/EiJ f 63.8 6.62   6 2.7 0.104 53.6, 69.9 0.9
CBA/J f 44.8 3.76   8 1.33 0.0838 39.6, 51.1 -0.09
CBA/J m 30.6 7.63   8 2.7 0.249 18.3, 41.1 -0.99
DBA/2J f 78.3 3.96   8 1.4 0.0505 72.3, 85.9 1.65
DBA/2J m 64.6 10.3   8 3.65 0.16 40.5, 72.0 0.81
FVB/NJ f 23.3 4.22   8 1.49 0.181 17.9, 30.8 -1.21
FVB/NJ m 35.8 6.53   8 2.31 0.182 27.0, 46.0 -0.71
KK/HlJ f 52.8 4.16   8 1.47 0.0787 47.5, 60.6 0.32
KK/HlJ m 67.6 7.24   8 2.56 0.107 55.0, 75.1 0.97
LP/J f 43.1 9.22   8 3.26 0.214 31.3, 53.8 -0.18
LP/J m 54.3 10.1   8 3.57 0.186 39.3, 68.3 0.27
MOLF/EiJ f 30.3 3.68   7 1.39 0.121 25.6, 34.2 -0.85
MOLF/EiJ m 34.2 4.56   8 1.61 0.133 24.1, 38.3 -0.8
MRL/MpJ f 46.1 6.15   8 2.17 0.133 37.2, 52.7 -0.02
MRL/MpJ m 31.9 3.96   8 1.4 0.124 25.6, 35.7 -0.92
NOD.B10Sn-H2b/J f 19.5 2.58   9 0.861 0.132 15.7, 23.4 -1.41
NOD.B10Sn-H2b/J m 23.5 4.36   7 1.65 0.186 18.5, 30.2 -1.36
NON/ShiLtJ f 64.8 4.66   7 1.76 0.072 57.8, 72.1 0.95
NON/ShiLtJ m 50.4 12.2   8 4.33 0.243 36.4, 73.8 0.06
NZO/HlLtJ f 35.3 6.93   8 2.45 0.196 24.7, 47.2 -0.59
NZO/HlLtJ m 38.2 4.78   8 1.69 0.125 30.1, 44.4 -0.59
NZW/LacJ f 55.3 3.12   8 1.1 0.0563 51.2, 60.4 0.46
NZW/LacJ m 71.9 2.64   8 0.932 0.0366 67.0, 75.4 1.2
P/J f 60.4 5.7   8 2.02 0.0945 49.7, 67.5 0.72
P/J m 17.4 2.54   8 0.897 0.146 14.8, 21.2 -1.69
PL/J f 7.0 0.712   7 0.269 0.102 5.96, 7.87 -2.06
PL/J m 17.4 3.24   7 1.22 0.186 12.2, 22.9 -1.69
PWD/PhJ f 23.1 2.29   8 0.809 0.0989 18.2, 24.7 -1.22
PWD/PhJ m 37.0 2.95   8 1.04 0.0798 33.7, 41.9 -0.65
RIIIS/J f 22.4 6.0   8 2.12 0.268 14.2, 31.1 -1.26
RIIIS/J m 34.1 3.46   8 1.22 0.101 29.2, 40.7 -0.8
SJL/J f 16.8 4.38   8 1.55 0.262 9.94, 22.7 -1.55
SJL/J m 38.8 13.1   6 5.35 0.338 29.4, 60.2 -0.55
SM/J f 40.3 5.04   16 1.26 0.125 31.5, 51.0 -0.33
SM/J m 54.8 4.89   8 1.73 0.0893 47.8, 60.3 0.29
SWR/J f 63.1 13.9   8 4.92 0.221 51.7, 91.7 0.86
SWR/J m 64.4 7.13   8 2.52 0.111 56.0, 77.2 0.8
WSB/EiJ f 34.5 4.07   8 1.44 0.118 25.9, 38.6 -0.63
WSB/EiJ m 26.7 6.12   6 2.5 0.229 19.1, 36.5 -1.19


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 60.9625 2.4369 65.7521 56.1729
129S1/SvImJ m 69.525 2.4369 74.3146 64.7354
A/J f 57.1875 2.4369 61.9771 52.3979
A/J m 61.9625 2.4369 66.7521 57.1729
AKR/J f 49.15 2.4369 53.9396 44.3604
AKR/J m 56.125 2.4369 60.9146 51.3354
BALB/cByJ f 45.3625 2.4369 50.1521 40.5729
BALB/cByJ m 44.9875 2.4369 49.7771 40.1979
BTBR T+ Itpr3tf/J f 25.075 2.4369 29.8646 20.2854
BTBR T+ Itpr3tf/J m 31.3375 2.4369 36.1271 26.5479
BUB/BnJ f 62.925 2.4369 67.7146 58.1354
BUB/BnJ m 74.775 2.4369 79.5646 69.9854
C3H/HeJ f 35.1875 2.4369 39.9771 30.3979
C3H/HeJ m 42.9625 2.4369 47.7521 38.1729
C57BL/10J f 83.625 2.4369 88.4146 78.8354
C57BL/10J m 77.65 2.4369 82.4396 72.8604
C57BL/6J f 68.125 2.4369 72.9146 63.3354
C57BL/6J m 82.0125 2.4369 86.8021 77.2229
C57BLKS/J f 62.15 2.4369 66.9396 57.3604
C57BLKS/J m 54.1 2.4369 58.8896 49.3104
C57BR/cdJ f 47.0625 2.4369 51.8521 42.2729
C57BR/cdJ m 60.8 2.4369 65.5896 56.0104
C57L/J f 68.3375 2.4369 73.1271 63.5479
C57L/J m 76.9625 2.4369 81.7521 72.1729
CBA/J f 44.8375 2.4369 49.6271 40.0479
CBA/J m 30.6375 2.4369 35.4271 25.8479
DBA/2J f 78.35 2.4369 83.1396 73.5604
DBA/2J m 64.6125 2.4369 69.4021 59.8229
FVB/NJ f 23.3 2.4369 28.0896 18.5104
FVB/NJ m 35.85 2.4369 40.6396 31.0604
KK/HlJ f 52.8375 2.4369 57.6271 48.0479
KK/HlJ m 67.6 2.4369 72.3896 62.8104
LP/J f 43.0875 2.4369 47.8771 38.2979
LP/J m 54.3375 2.4369 59.1271 49.5479
MOLF/EiJ f 30.3429 2.6052 35.4631 25.2226
MOLF/EiJ m 34.175 2.4369 38.9646 29.3854
MRL/MpJ f 46.1125 2.4369 50.9021 41.3229
MRL/MpJ m 31.85 2.4369 36.6396 27.0604
NOD.B10Sn-H2b/J f 19.5222 2.2975 24.0379 15.0065
NOD.B10Sn-H2b/J m 23.4857 2.6052 28.606 18.3654
NON/ShiLtJ f 64.7714 2.6052 69.8917 59.6511
NON/ShiLtJ m 50.4 2.4369 55.1896 45.6104
NZO/HlLtJ f 35.2625 2.4369 40.0521 30.4729
NZO/HlLtJ m 38.1625 2.4369 42.9521 33.3729
NZW/LacJ f 55.3 2.4369 60.0896 50.5104
NZW/LacJ m 71.9125 2.4369 76.7021 67.1229
P/J f 60.3875 2.4369 65.1771 55.5979
P/J m 17.425 2.4369 22.2146 12.6354
PL/J f 6.9971 2.6052 12.1174 1.8769
PL/J m 17.4286 2.6052 22.5489 12.3083
PWD/PhJ f 23.125 2.4369 27.9146 18.3354
PWD/PhJ m 37.0375 2.4369 41.8271 32.2479
RIIIS/J f 22.3875 2.4369 27.1771 17.5979
RIIIS/J m 34.1125 2.4369 38.9021 29.3229
SJL/J f 16.755 2.4369 21.5446 11.9654
SJL/J m 38.75 2.8139 44.2805 33.2195
SM/J f 40.2875 1.7231 43.6743 36.9007
SM/J m 54.75 2.4369 59.5396 49.9604
SWR/J f 63.1125 2.4369 67.9021 58.3229
SWR/J m 64.3875 2.4369 69.1771 59.5979
WSB/EiJ f 34.55 2.4369 39.3396 29.7604
WSB/EiJ m 26.7167 2.8139 32.2472 21.1861


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 65.2438 1.7231 68.6305 61.857
A/J both 59.575 1.7231 62.9618 56.1882
AKR/J both 52.6375 1.7231 56.0243 49.2507
BALB/cByJ both 45.175 1.7231 48.5618 41.7882
BTBR T+ Itpr3tf/J both 28.2063 1.7231 31.593 24.8195
BUB/BnJ both 68.85 1.7231 72.2368 65.4632
C3H/HeJ both 39.075 1.7231 42.4618 35.6882
C57BL/10J both 80.6375 1.7231 84.0243 77.2507
C57BL/6J both 75.0688 1.7231 78.4555 71.682
C57BLKS/J both 58.125 1.7231 61.5118 54.7382
C57BR/cdJ both 53.9313 1.7231 57.318 50.5445
C57L/J both 72.65 1.7231 76.0368 69.2632
CBA/J both 37.7375 1.7231 41.1243 34.3507
DBA/2J both 71.4813 1.7231 74.868 68.0945
FVB/NJ both 29.575 1.7231 32.9618 26.1882
KK/HlJ both 60.2188 1.7231 63.6055 56.832
LP/J both 48.7125 1.7231 52.0993 45.3257
MOLF/EiJ both 32.2589 1.7836 35.7646 28.7533
MRL/MpJ both 38.9813 1.7231 42.368 35.5945
NOD.B10Sn-H2b/J both 21.504 1.7368 24.9175 18.0904
NON/ShiLtJ both 57.5857 1.7836 61.0913 54.0801
NZO/HlLtJ both 36.7125 1.7231 40.0993 33.3257
NZW/LacJ both 63.6063 1.7231 66.993 60.2195
P/J both 38.9063 1.7231 42.293 35.5195
PL/J both 12.2129 1.8421 15.8334 8.5923
PWD/PhJ both 30.0813 1.7231 33.468 26.6945
RIIIS/J both 28.25 1.7231 31.6368 24.8632
SJL/J both 27.7525 1.8612 31.4106 24.0944
SM/J both 47.5188 1.4923 50.4518 44.5857
SWR/J both 63.75 1.7231 67.1368 60.3632
WSB/EiJ both 30.6333 1.8612 34.2914 26.9752




  GWAS USING LINEAR MIXED MODELS