Project measure / variable:   Jaxpheno6   pct_NK_16

ID, description, units MPD:23108   pct_NK_16   splenic NK cells (percentage of total viable cells)   [%]  at age age 16wks  
Data set, strains Jaxpheno6   inbred   8 strains     sex: both     age: 16wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Jaxpheno6 - splenic NK cells (percentage of total viable cells) at age age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains6 strains
Mean of the strain means2.61   % 3.44   %
Median of the strain means1.80   % 2.39   %
SD of the strain means± 2.23 ± 2.89
Coefficient of variation (CV)0.853 0.839
Min–max range of strain means1.10   –   7.93   % 1.81   –   9.29   %
Mean sample size per strain8.0   mice 7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 4.5737 4.5737 2.9139 0.0914
strain 5 376.3798 75.276 47.9583 < 0.0001
sex:strain 5 6.2594 1.2519 0.7976 0.5544
Residuals 86 134.9866 1.5696


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 1.21 0.264   5 0.118 0.218 1.02, 1.67 -0.63
BALB/cByJ f 2.78 0.249   10 0.0788 0.0897 2.28, 3.15 0.07
BALB/cByJ m 2.71 0.453   9 0.151 0.167 2.07, 3.49 -0.25
C3H/HeJ f 1.73 0.157   10 0.0495 0.0906 1.57, 1.99 -0.4
C3H/HeJ m 1.81 0.508   5 0.227 0.281 1.34, 2.6 -0.56
C57BL/6J f 1.1 0.133   5 0.0594 0.12 0.98, 1.3 -0.68
CBA/J f 1.64 0.143   9 0.0478 0.0875 1.46, 1.94 -0.44
CBA/J m 2.04 0.183   10 0.0578 0.0898 1.71, 2.35 -0.48
FVB/NJ f 2.65 0.55   10 0.174 0.208 2.1, 3.63 0.02
FVB/NJ m 2.21 0.202   5 0.0901 0.091 1.92, 2.47 -0.43
NOD.CB17-Prkdcscid/J f 7.93 5.03   5 2.25 0.635 2.38
NOD.CB17-Prkdcscid/J m 9.29 1.73   5 0.776 0.187 8.05, 12.3 2.03
NOD/ShiLtJ f 1.87 0.383   10 0.121 0.204 1.4, 2.59 -0.33
NOD/ShiLtJ m 2.57 1.23   10 0.389 0.478 1.35, 5.87 -0.3


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BALB/cByJ f 2.778 0.3962 3.5656 1.9904
BALB/cByJ m 2.7089 0.4176 3.5391 1.8787
C3H/HeJ f 1.728 0.3962 2.5156 0.9404
C3H/HeJ m 1.806 0.5603 2.9198 0.6922
CBA/J f 1.6389 0.4176 2.4691 0.8087
CBA/J m 2.036 0.3962 2.8236 1.2484
FVB/NJ f 2.648 0.3962 3.4356 1.8604
FVB/NJ m 2.214 0.5603 3.3278 1.1002
NOD.CB17-Prkdcscid/J f 7.928 0.5603 9.0418 6.8142
NOD.CB17-Prkdcscid/J m 9.292 0.5603 10.4058 8.1782
NOD/ShiLtJ f 1.874 0.3962 2.6616 1.0864
NOD/ShiLtJ m 2.569 0.3962 3.3566 1.7814


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BALB/cByJ both 2.7434 0.2878 3.3156 2.1713
C3H/HeJ both 1.767 0.3431 2.4491 1.0849
CBA/J both 1.8374 0.2878 2.4096 1.2653
FVB/NJ both 2.431 0.3431 3.1131 1.7489
NOD.CB17-Prkdcscid/J both 8.61 0.3962 9.3976 7.8224
NOD/ShiLtJ both 2.2215 0.2801 2.7784 1.6646




  GWAS USING LINEAR MIXED MODELS