Project measure / variable:   Jaxpheno6   pct_CD8_16

ID, description, units MPD:23104   pct_CD8_16   splenic CD8 T cells (percentage of total viable cells)   [%]  at age age 16wks  
Data set, strains Jaxpheno6   inbred   8 strains     sex: both     age: 16wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Jaxpheno6 - splenic CD8 T cells (percentage of total viable cells) at age age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested8 strains6 strains
Mean of the strain means7.55   % 7.36   %
Median of the strain means8.12   % 8.68   %
SD of the strain means± 3.72 ± 3.90
Coefficient of variation (CV)0.492 0.531
Min–max range of strain means0.0160   –   12.2   % 0.0480   –   10.4   %
Mean sample size per strain8.0   mice 7.3   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.1746 0.1746 0.0698 0.7923
strain 5 1066.3604 213.2721 85.233 < 0.0001
sex:strain 5 20.4516 4.0903 1.6347 0.1594
Residuals 86 215.1912 2.5022


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 6.79 1.1   5 0.49 0.161 5.49, 8.46 -0.21
BALB/cByJ f 7.88 1.28   10 0.405 0.162 6.13, 9.94 0.09
BALB/cByJ m 8.15 0.762   9 0.254 0.0935 6.69, 9.32 0.2
C3H/HeJ f 9.23 0.814   10 0.257 0.0881 8.06, 10.1 0.45
C3H/HeJ m 9.2 0.598   5 0.267 0.065 8.54, 10.1 0.47
C57BL/6J f 8.37 1.05   5 0.469 0.125 6.91, 9.56 0.22
CBA/J f 10.6 1.22   9 0.406 0.114 9.04, 13.3 0.82
CBA/J m 10.4 0.813   10 0.257 0.0781 9.1, 11.5 0.78
FVB/NJ f 5.34 1.54   10 0.486 0.288 2.46, 6.3 -0.6
FVB/NJ m 6.16 1.07   5 0.478 0.174 5.05, 7.84 -0.31
NOD.CB17-Prkdcscid/J f 0.016 0.023   5 0.0103 1.44 -2.03
NOD.CB17-Prkdcscid/J m 0.048 0.0614   5 0.0275 1.28 -1.87
NOD/ShiLtJ f 12.2 3.69   10 1.17 0.303 7.57, 21.9 1.25
NOD/ShiLtJ m 10.2 1.58   10 0.499 0.155 8.22, 12.6 0.73


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
BALB/cByJ f 7.882 0.5002 8.8764 6.8876
BALB/cByJ m 8.1544 0.5273 9.2026 7.1062
C3H/HeJ f 9.234 0.5002 10.2284 8.2396
C3H/HeJ m 9.204 0.7074 10.6103 7.7977
CBA/J f 10.64 0.5273 11.6882 9.5918
CBA/J m 10.412 0.5002 11.4064 9.4176
FVB/NJ f 5.336 0.5002 6.3304 4.3416
FVB/NJ m 6.16 0.7074 7.5663 4.7537
NOD.CB17-Prkdcscid/J f 0.016 0.7074 1.4223 0.0
NOD.CB17-Prkdcscid/J m 0.048 0.7074 1.4543 0.0
NOD/ShiLtJ f 12.177 0.5002 13.1714 11.1826
NOD/ShiLtJ m 10.195 0.5002 11.1894 9.2006


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
BALB/cByJ both 8.0182 0.3634 8.7406 7.2958
C3H/HeJ both 9.219 0.4332 10.0802 8.3578
CBA/J both 10.526 0.3634 11.2484 9.8036
FVB/NJ both 5.748 0.4332 6.6092 4.8868
NOD.CB17-Prkdcscid/J both 0.032 0.5002 1.0264 0.0
NOD/ShiLtJ both 11.186 0.3537 11.8892 10.4828




  GWAS USING LINEAR MIXED MODELS