Project measure / variable:   Jaxpheno6   pct_CD8_8

ID, description, units MPD:23103   pct_CD8_8   splenic CD8 T cells (percentage of total viable cells)   [%]  at age age 8wks  
Data set, strains Jaxpheno6   inbred   11 strains     sex: both     age: 8wks
Procedure immune cell quantification
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  STRAIN COMPARISON PLOT
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Jaxpheno6 - splenic CD8 T cells (percentage of total viable cells) at age age 8wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means8.02   % 8.10   %
Median of the strain means9.08   % 9.07   %
SD of the strain means± 3.28 ± 3.23
Coefficient of variation (CV)0.410 0.399
Min–max range of strain means0.0100   –   11.7   % 0.00500   –   10.6   %
Mean sample size per strain8.9   mice 10.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 40.918 40.918 25.2924 < 0.0001
strain 10 1895.7461 189.5746 117.1806 < 0.0001
sex:strain 10 83.5759 8.3576 5.166 < 0.0001
Residuals 207 334.8844 1.6178


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.129P2-Apoetm1Unc/J f 7.47 1.07   4 0.536 0.143 6.55, 8.91 -0.17
B6.129P2-Apoetm1Unc/J m 9.65 0.725   5 0.324 0.0751 8.83, 10.6 0.48
B6D2F1/J f 9.08 1.72   10 0.543 0.189 6.07, 12.4 0.32
B6D2F1/J m 8.02 0.768   5 0.344 0.0959 6.81, 8.69 -0.02
BALB/cByJ f 10.8 1.56   10 0.493 0.145 8.74, 13.2 0.85
BALB/cByJ m 10.4 1.37   10 0.432 0.132 8.27, 12.0 0.71
BALB/cJ f 9.45 1.7   10 0.536 0.179 7.56, 12.2 0.44
BALB/cJ m 10.6 0.85   10 0.269 0.0804 9.56, 12.0 0.77
C3H/HeJ f 8.43 1.46   5 0.651 0.173 6.84, 9.63 0.13
C3H/HeJ m 8.65 3.07   5 1.37 0.355 3.59, 11.6 0.17
C57BL/6J f 9.99 1.29   30 0.235 0.129 6.67, 12.3 0.6
C57BL/6J m 8.63 0.748   15 0.193 0.0868 7.57, 9.91 0.16
CBA/J f 9.25 1.33   10 0.42 0.143 6.6, 11.5 0.38
CBA/J m 10.4 1.57   20 0.351 0.151 6.6, 12.9 0.71
DBA/2J f 4.39 0.632   10 0.2 0.144 3.03, 5.12 -1.1
DBA/2J m 4.08 0.716   15 0.185 0.176 2.96, 5.59 -1.24
FVB/NJ f 7.61 0.483   5 0.216 0.0634 7.08, 8.27 -0.12
FVB/NJ m 9.07 0.641   10 0.203 0.0706 8.29, 10.2 0.3
NOD.CB17-Prkdcscid/J f 0.01 0.0141   5 0.00632 1.41 -2.44
NOD.CB17-Prkdcscid/J m 0.005 0.00707   10 0.00224 1.41 -2.5
NOD/ShiLtJ f 11.7 1.61   15 0.415 0.137 8.53, 14.7 1.12
NOD/ShiLtJ m 9.56 1.2   10 0.378 0.125 7.92, 11.2 0.45


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J f 7.47 0.636 8.7238 6.2162
B6.129P2-Apoetm1Unc/J m 9.654 0.5688 10.7754 8.5326
B6D2F1/J f 9.076 0.4022 9.869 8.283
B6D2F1/J m 8.016 0.5688 9.1374 6.8946
BALB/cByJ f 10.753 0.4022 11.546 9.96
BALB/cByJ m 10.365 0.4022 11.158 9.572
BALB/cJ f 9.452 0.4022 10.245 8.659
BALB/cJ m 10.584 0.4022 11.377 9.791
C3H/HeJ f 8.43 0.5688 9.5514 7.3086
C3H/HeJ m 8.654 0.5688 9.7754 7.5326
C57BL/6J f 9.9913 0.2322 10.4492 9.5335
C57BL/6J m 8.6267 0.3284 9.2741 7.9792
CBA/J f 9.253 0.4022 10.046 8.46
CBA/J m 10.4335 0.2844 10.9942 9.8728
DBA/2J f 4.386 0.4022 5.179 3.593
DBA/2J m 4.078 0.3284 4.7255 3.4305
FVB/NJ f 7.61 0.5688 8.7314 6.4886
FVB/NJ m 9.071 0.4022 9.864 8.278
NOD.CB17-Prkdcscid/J f 0.01 0.5688 1.1314 0.0
NOD.CB17-Prkdcscid/J m 0.005 0.4022 0.798 0.0
NOD/ShiLtJ f 11.7287 0.3284 12.3761 11.0812
NOD/ShiLtJ m 9.557 0.4022 10.35 8.764


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J both 8.562 0.4266 9.4031 7.7209
B6D2F1/J both 8.546 0.3483 9.2327 7.8593
BALB/cByJ both 10.559 0.2844 11.1197 9.9983
BALB/cJ both 10.018 0.2844 10.5787 9.4573
C3H/HeJ both 8.542 0.4022 9.335 7.749
C57BL/6J both 9.309 0.2011 9.7055 8.9125
CBA/J both 9.8432 0.2463 10.3288 9.3577
DBA/2J both 4.232 0.2596 4.7439 3.7201
FVB/NJ both 8.3405 0.3483 9.0272 7.6538
NOD.CB17-Prkdcscid/J both 0.0075 0.3483 0.6942 0.0
NOD/ShiLtJ both 10.6428 0.2596 11.1547 10.131




  GWAS USING LINEAR MIXED MODELS