Project measure / variable:   Jaxpheno5   bw14

ID, description, units MPD:23012   bw14   body weight   [g]  at age 14 wks  
Data set, strains Jaxpheno5   inbred   10 strains     sex: both     age: 14wks
Procedure body weight
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  STRAIN COMPARISON PLOT
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Jaxpheno5 - body weight at age 14 wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested10 strains10 strains
Mean of the strain means23.4   g 29.5   g
Median of the strain means23.6   g 29.1   g
SD of the strain means± 1.19 ± 2.00
Coefficient of variation (CV)0.0506 0.0678
Min–max range of strain means21.7   –   25.2   g 26.5   –   33.1   g
Mean sample size per strain86.2   mice 87.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 7235.8571 7235.8571 1413.6456 < 0.0001
strain 6 725.9688 120.9948 23.6384 < 0.0001
sex:strain 6 262.9316 43.8219 8.5613 < 0.0001
Residuals 695 3557.4127 5.1186


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 22.6 1.8   157 0.144 0.08 -0.7
A/J m 26.5 2.4   148 0.197 0.091 -1.49
B6D2F1/J f 24.9 2.88   31 0.516 0.116 18.8, 29.5 1.24
B6D2F1/J m 33.1 2.24   28 0.424 0.0678 29.0, 37.5 1.81
B6.SJL-Ptprca Pepcb/BoyJ f 23.7 2.3   95 0.236 0.097 0.23
B6.SJL-Ptprca Pepcb/BoyJ m 30.1 2.4   112 0.227 0.08 0.31
BALB/cByJ f 24.0 2.46   58 0.323 0.102 12.4, 29.0 0.48
BALB/cByJ m 28.6 1.52   59 0.198 0.0533 25.8, 32.7 -0.44
C57BL/6J f 21.7 2.18   107 0.21 0.1 18.2, 31.8 -1.46
C57BL/6J m 29.2 1.75   104 0.172 0.06 25.4, 34.6 -0.14
CBA/J f 24.0 3.23   56 0.432 0.134 16.1, 32.0 0.48
CBA/J m 29.9 2.59   56 0.346 0.0866 24.2, 35.7 0.21
DBA/2J f 22.9 2.13   30 0.389 0.0932 16.5, 26.0 -0.45
DBA/2J m 27.7 2.35   30 0.43 0.085 22.8, 33.0 -0.89
NOD.CB17-Prkdcscid/J f 21.8 1.3   80 0.145 0.06 -1.38
NOD.CB17-Prkdcscid/J m 29.0 2.0   75 0.231 0.069 -0.24
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ f 25.2 1.7   196 0.121 0.067 1.49
NOD.Cg-Prkdcscid Il2rgtm1Wjl/SzJ m 32.3 2.3   200 0.163 0.071 1.41
NOD/ShiLtJ f 23.5 1.8   106 0.175 0.077 0.06
NOD/ShiLtJ m 28.4 2.0   113 0.188 0.07 -0.54


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 24.8580645161 0.4063440211 25.6558735307 24.0602555016
B6D2F1/J m 33.0714285714 0.427558658 33.9108900471 32.2319670958
BALB/cByJ f 24.0293103448 0.2970713188 24.612575174 23.4460455157
BALB/cByJ m 28.6169491525 0.2945430062 29.1952499355 28.0386483696
C57BL/6J f 21.6691588785 0.2187171469 22.098584445 21.239733312
C57BL/6J m 29.1769230769 0.2218492942 29.6124982486 28.7413479053
CBA/J f 24.0357142857 0.3023296264 24.6293031877 23.4421253837
CBA/J m 29.8642857143 0.3023296264 30.4578746163 29.2706968123
DBA/2J f 22.8733333333 0.4130609063 23.6843301672 22.0623364995
DBA/2J m 27.68 0.4130609063 28.4909968338 26.8690031662
NOD.CB17-Prkdcscid/J f 23.465 0.5058942266 24.458264213 22.471735787
NOD.CB17-Prkdcscid/J m 29.975 0.5058942266 30.968264213 28.981735787
NOD/ShiLtJ f 23.5369230769 0.2806196267 24.0878869308 22.9859592231
NOD/ShiLtJ m 30.4377777778 0.3372628177 31.0999539198 29.7756016358


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 28.9647465438 0.2949245113 29.5437963674 28.3856967202
BALB/cByJ both 26.3231297487 0.2091691606 26.7338089594 25.912450538
C57BL/6J both 25.4230409777 0.1557676954 25.7288726501 25.1172093053
CBA/J both 26.95 0.213779329 27.3697307378 26.5302692622
DBA/2J both 25.2766666667 0.2920781679 25.8501280274 24.7032053059
NOD.CB17-Prkdcscid/J both 26.72 0.3577212382 27.4223438605 26.0176561395
NOD/ShiLtJ both 26.9873504274 0.2193704533 27.4180586845 26.5566421702




  GWAS USING LINEAR MIXED MODELS