Project measure / variable:   Jaxpheno2   spleen16

ID, description, units MPD:22741   spleen16   spleen weight   [g]  at age 16wks  
Data set, strains Jaxpheno2   inbred   9 strains     sex: both     age: 16wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Jaxpheno2 - spleen weight at age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means0.0858   g 0.0767   g
Median of the strain means0.0843   g 0.0799   g
SD of the strain means± 0.0225 ± 0.0203
Coefficient of variation (CV)0.263 0.264
Min–max range of strain means0.0387   –   0.110   g 0.0338   –   0.111   g
Mean sample size per strain7.0   mice 7.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0024 0.0024 19.498 < 0.0001
strain 8 0.0373 0.0047 37.5279 < 0.0001
sex:strain 8 0.0031 0.0004 3.0896 0.0033
Residuals 120 0.0149 0.0001


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 0.0757 0.00219   4 0.00109 0.0289 0.073, 0.0783 -0.45
B6D2F1/J m 0.0698 0.0115   5 0.00514 0.165 0.0556, 0.0874 -0.34
BALB/cByJ f 0.106 0.0144   10 0.00455 0.135 0.0938, 0.142 0.9
BALB/cByJ m 0.0836 0.00667   10 0.00211 0.0798 0.0725, 0.0962 0.34
C3H/HeJ f 0.0928 0.00428   5 0.00191 0.0461 0.0883, 0.0982 0.31
C3H/HeJ m 0.0773 0.0101   5 0.0045 0.13 0.062, 0.0884 0.03
C57BL/6J f 0.0815 0.00636   15 0.00164 0.078 0.0744, 0.0972 -0.19
C57BL/6J m 0.0799 0.0132   15 0.00341 0.165 0.0672, 0.124 0.16
CBA/J f 0.074 0.00684   9 0.00228 0.0925 0.0641, 0.089 -0.52
CBA/J m 0.0683 0.0137   10 0.00432 0.2 0.0569, 0.104 -0.42
DBA/2J f 0.109 0.00968   5 0.00433 0.0891 0.0951, 0.118 1.03
DBA/2J m 0.0817 0.00616   5 0.00275 0.0754 0.0759, 0.0907 0.24
FVB/NJ f 0.11 0.00636   5 0.00285 0.0579 0.104, 0.118 1.08
FVB/NJ m 0.111 0.0159   5 0.00713 0.144 0.092, 0.133 1.69
NOD.CB17-Prkdcscid/J f 0.0387 0.00541   5 0.00242 0.14 0.0345, 0.0479 -2.09
NOD.CB17-Prkdcscid/J m 0.0338 0.00198   5 0.000888 0.0587 0.0317, 0.0367 -2.12
NOD/ShiLtJ f 0.0843 0.0211   10 0.00668 0.251 0.0342, 0.109 -0.07
NOD/ShiLtJ m 0.0852 0.00885   10 0.0028 0.104 0.0702, 0.0967 0.42


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 0.0757 0.0056 0.0868 0.0647
B6D2F1/J m 0.0698 0.005 0.0796 0.0599
BALB/cByJ f 0.1064 0.0035 0.1134 0.0995
BALB/cByJ m 0.0836 0.0035 0.0906 0.0766
C3H/HeJ f 0.0928 0.005 0.1027 0.0829
C3H/HeJ m 0.0773 0.005 0.0872 0.0674
C57BL/6J f 0.0815 0.0029 0.0872 0.0758
C57BL/6J m 0.0799 0.0029 0.0856 0.0742
CBA/J f 0.074 0.0037 0.0814 0.0666
CBA/J m 0.0683 0.0035 0.0753 0.0613
DBA/2J f 0.1086 0.005 0.1185 0.0987
DBA/2J m 0.0817 0.005 0.0916 0.0718
FVB/NJ f 0.11 0.005 0.1199 0.1001
FVB/NJ m 0.1106 0.005 0.1205 0.1007
NOD.CB17-Prkdcscid/J f 0.0387 0.005 0.0486 0.0288
NOD.CB17-Prkdcscid/J m 0.0338 0.005 0.0437 0.0239
NOD/ShiLtJ f 0.0843 0.0035 0.0913 0.0774
NOD/ShiLtJ m 0.0852 0.0035 0.0921 0.0782


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 0.0728 0.0037 0.0802 0.0654
BALB/cByJ both 0.095 0.0025 0.1 0.0901
C3H/HeJ both 0.085 0.0035 0.092 0.0781
C57BL/6J both 0.0807 0.002 0.0847 0.0767
CBA/J both 0.0711 0.0026 0.0762 0.0661
DBA/2J both 0.0952 0.0035 0.1022 0.0882
FVB/NJ both 0.1103 0.0035 0.1173 0.1033
NOD.CB17-Prkdcscid/J both 0.0363 0.0035 0.0432 0.0293
NOD/ShiLtJ both 0.0847 0.0025 0.0897 0.0798




  GWAS USING LINEAR MIXED MODELS