Project measure / variable:   Jaxpheno2   spleen8

ID, description, units MPD:22740   spleen8   spleen weight   [g]  at age 8wks  
Data set, strains Jaxpheno2   inbred   11 strains     sex: both     age: 8wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Jaxpheno2 - spleen weight at age 8wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means0.0796   g 0.0730   g
Median of the strain means0.0818   g 0.0765   g
SD of the strain means± 0.0196 ± 0.0155
Coefficient of variation (CV)0.246 0.212
Min–max range of strain means0.0311   –   0.101   g 0.0341   –   0.0885   g
Mean sample size per strain7.9   mice 8.8   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0009 0.0009 8.1416 0.0049
strain 10 0.0317 0.0032 27.3323 < 0.0001
sex:strain 10 0.006 0.0006 5.1505 < 0.0001
Residuals 168 0.0195 0.0001


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.129P2-Apoetm1Unc/J f 0.0995 0.0288   5 0.0129 0.29 0.0792, 0.15 1.02
B6.129P2-Apoetm1Unc/J m 0.0846 0.0071   5 0.00317 0.0839 0.0726, 0.0901 0.75
B6D2F1/J f 0.0831 0.0165   6 0.00675 0.199 0.0693, 0.11 0.18
B6D2F1/J m 0.0713 0.00401   5 0.00179 0.0562 0.0664, 0.076 -0.11
BALB/cByJ f 0.0911 0.00715   10 0.00226 0.0785 0.0756, 0.102 0.59
BALB/cByJ m 0.0779 0.00542   10 0.00171 0.0696 0.0695, 0.0875 0.31
BALB/cJ f 0.0818 0.00716   10 0.00226 0.0875 0.0691, 0.0915 0.11
BALB/cJ m 0.0765 0.00741   9 0.00247 0.0969 0.0682, 0.0933 0.22
C3H/HeJ f 0.0967 0.0186   5 0.00833 0.193 0.0787, 0.123 0.87
C3H/HeJ m 0.0738 0.00893   5 0.004 0.121 0.0659, 0.0843 0.05
C57BL/6J f 0.0724 0.00936   15 0.00242 0.129 0.0584, 0.0943 -0.37
C57BL/6J m 0.084 0.0104   15 0.00269 0.124 0.0705, 0.113 0.71
CBA/J f 0.072 0.00863   10 0.00273 0.12 0.0588, 0.0831 -0.39
CBA/J m 0.0583 0.00594   15 0.00153 0.102 0.0486, 0.0696 -0.95
DBA/2J f 0.0722 0.0167   10 0.00528 0.231 0.0446, 0.0971 -0.38
DBA/2J m 0.0839 0.00855   15 0.00221 0.102 0.0698, 0.0988 0.7
FVB/NJ f 0.101 0.00533   5 0.00238 0.0527 0.0928, 0.105 1.09
FVB/NJ m 0.0885 0.0111   5 0.00497 0.126 0.0714, 0.098 1.0
NOD.CB17-Prkdcscid/J f 0.0311 0.0074   5 0.00331 0.238 0.0249, 0.0393 -2.47
NOD.CB17-Prkdcscid/J m 0.0341 0.00255   5 0.00114 0.0748 0.0313, 0.0373 -2.52
NOD/ShiLtJ f 0.0743 0.0137   10 0.00434 0.185 0.0596, 0.0973 -0.27
NOD/ShiLtJ m 0.0705 0.0115   10 0.00363 0.163 0.0512, 0.0833 -0.16


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J f 0.0995 0.0048 0.109 0.09
B6.129P2-Apoetm1Unc/J m 0.0846 0.0048 0.0941 0.0751
B6D2F1/J f 0.0831 0.0044 0.0917 0.0744
B6D2F1/J m 0.0713 0.0048 0.0808 0.0618
BALB/cByJ f 0.0911 0.0034 0.0978 0.0844
BALB/cByJ m 0.0779 0.0034 0.0847 0.0712
BALB/cJ f 0.0818 0.0034 0.0885 0.075
BALB/cJ m 0.0765 0.0036 0.0835 0.0694
C3H/HeJ f 0.0967 0.0048 0.1062 0.0872
C3H/HeJ m 0.0738 0.0048 0.0833 0.0643
C57BL/6J f 0.0724 0.0028 0.0779 0.067
C57BL/6J m 0.084 0.0028 0.0895 0.0785
CBA/J f 0.072 0.0034 0.0787 0.0653
CBA/J m 0.0583 0.0028 0.0638 0.0528
DBA/2J f 0.0722 0.0034 0.0789 0.0655
DBA/2J m 0.0839 0.0028 0.0894 0.0784
FVB/NJ f 0.1011 0.0048 0.1106 0.0916
FVB/NJ m 0.0885 0.0048 0.098 0.079
NOD.CB17-Prkdcscid/J f 0.0311 0.0048 0.0406 0.0216
NOD.CB17-Prkdcscid/J m 0.0341 0.0048 0.0436 0.0246
NOD/ShiLtJ f 0.0743 0.0034 0.081 0.0676
NOD/ShiLtJ m 0.0705 0.0034 0.0772 0.0638


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J both 0.0921 0.0034 0.0988 0.0853
B6D2F1/J both 0.0772 0.0033 0.0836 0.0708
BALB/cByJ both 0.0845 0.0024 0.0893 0.0798
BALB/cJ both 0.0791 0.0025 0.084 0.0742
C3H/HeJ both 0.0852 0.0034 0.092 0.0785
C57BL/6J both 0.0782 0.002 0.0821 0.0744
CBA/J both 0.0651 0.0022 0.0695 0.0608
DBA/2J both 0.0781 0.0022 0.0824 0.0737
FVB/NJ both 0.0948 0.0034 0.1015 0.0881
NOD.CB17-Prkdcscid/J both 0.0326 0.0034 0.0393 0.0259
NOD/ShiLtJ both 0.0724 0.0024 0.0772 0.0677




  GWAS USING LINEAR MIXED MODELS