Project measure / variable:   Jaxpheno2   pct_liver8

ID, description, units MPD:22722   pct_liver8   liver weight as percentage of body weight   [%]  at age 8wks  
Data set, strains Jaxpheno2   inbred   11 strains     sex: both     age: 8wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Jaxpheno2 - liver weight as percentage of body weight at age 8wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means5.11   % 5.29   %
Median of the strain means5.12   % 5.26   %
SD of the strain means± 0.449 ± 0.283
Coefficient of variation (CV)0.0878 0.0536
Min–max range of strain means4.26   –   5.88   % 4.81   –   5.75   %
Mean sample size per strain7.9   mice 8.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.644 0.644 2.1139 0.1478
strain 10 17.7072 1.7707 5.8124 < 0.0001
sex:strain 10 5.4657 0.5466 1.7941 0.065
Residuals 169 51.4848 0.3046


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.129P2-Apoetm1Unc/J f 4.26 2.11   5 0.943 0.495 0.49, 5.29 -1.9
B6.129P2-Apoetm1Unc/J m 5.26 0.17   5 0.076 0.0323 5.04, 5.51 -0.1
B6D2F1/J f 5.04 0.615   6 0.251 0.122 3.92, 5.65 -0.16
B6D2F1/J m 5.31 0.11   5 0.0492 0.0207 5.18, 5.48 0.07
BALB/cByJ f 5.88 1.07   10 0.338 0.182 4.95, 8.75 1.71
BALB/cByJ m 5.72 0.184   10 0.058 0.0321 5.36, 5.94 1.52
BALB/cJ f 5.0 0.259   10 0.0818 0.0518 4.7, 5.53 -0.25
BALB/cJ m 4.81 0.24   10 0.0759 0.0499 4.34, 5.17 -1.69
C3H/HeJ f 5.51 0.134   5 0.0601 0.0244 5.32, 5.66 0.88
C3H/HeJ m 5.27 0.149   5 0.0664 0.0282 5.12, 5.51 -0.07
C57BL/6J f 5.12 0.363   15 0.0937 0.0709 4.68, 5.96 0.01
C57BL/6J m 5.24 0.479   15 0.124 0.0913 4.04, 5.94 -0.17
CBA/J f 5.5 0.207   10 0.0654 0.0376 5.17, 5.91 0.86
CBA/J m 5.75 0.467   15 0.121 0.0813 4.92, 7.09 1.63
DBA/2J f 4.97 0.35   10 0.111 0.0704 4.44, 5.49 -0.32
DBA/2J m 4.97 0.33   15 0.0852 0.0664 4.49, 5.84 -1.13
FVB/NJ f 5.12 0.202   5 0.0905 0.0395 4.79, 5.32 0.01
FVB/NJ m 5.23 0.253   5 0.113 0.0484 4.92, 5.56 -0.21
NOD.CB17-Prkdcscid/J f 4.55 0.278   5 0.124 0.0611 4.08, 4.75 -1.26
NOD.CB17-Prkdcscid/J m 5.49 0.474   5 0.212 0.0865 4.72, 5.92 0.71
NOD/ShiLtJ f 5.3 0.795   10 0.251 0.15 4.1, 6.55 0.42
NOD/ShiLtJ m 5.13 0.384   10 0.121 0.0748 4.17, 5.47 -0.56


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J f 4.256 0.2468 4.7433 3.7687
B6.129P2-Apoetm1Unc/J m 5.26 0.2468 5.7473 4.7727
B6D2F1/J f 5.0383 0.2253 5.4832 4.5935
B6D2F1/J m 5.308 0.2468 5.7953 4.8207
BALB/cByJ f 5.879 0.1745 6.2236 5.5344
BALB/cByJ m 5.719 0.1745 6.0636 5.3744
BALB/cJ f 4.996 0.1745 5.3406 4.6514
BALB/cJ m 4.814 0.1745 5.1586 4.4694
C3H/HeJ f 5.508 0.2468 5.9953 5.0207
C3H/HeJ m 5.272 0.2468 5.7593 4.7847
C57BL/6J f 5.1213 0.1425 5.4027 4.84
C57BL/6J m 5.2447 0.1425 5.526 4.9633
CBA/J f 5.499 0.1745 5.8436 5.1544
CBA/J m 5.7473 0.1425 6.0287 5.466
DBA/2J f 4.967 0.1745 5.3116 4.6224
DBA/2J m 4.9653 0.1425 5.2467 4.684
FVB/NJ f 5.116 0.2468 5.6033 4.6287
FVB/NJ m 5.23 0.2468 5.7173 4.7427
NOD.CB17-Prkdcscid/J f 4.546 0.2468 5.0333 4.0587
NOD.CB17-Prkdcscid/J m 5.486 0.2468 5.9733 4.9987
NOD/ShiLtJ f 5.302 0.1745 5.6466 4.9574
NOD/ShiLtJ m 5.131 0.1745 5.4756 4.7864


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J both 4.758 0.1745 5.1026 4.4134
B6D2F1/J both 5.1732 0.1671 5.5031 4.8433
BALB/cByJ both 5.799 0.1234 6.0426 5.5554
BALB/cJ both 4.905 0.1234 5.1486 4.6614
C3H/HeJ both 5.39 0.1745 5.7346 5.0454
C57BL/6J both 5.183 0.1008 5.3819 4.9841
CBA/J both 5.6232 0.1127 5.8456 5.4008
DBA/2J both 4.9662 0.1127 5.1886 4.7438
FVB/NJ both 5.173 0.1745 5.5176 4.8284
NOD.CB17-Prkdcscid/J both 5.016 0.1745 5.3606 4.6714
NOD/ShiLtJ both 5.2165 0.1234 5.4601 4.9729




  GWAS USING LINEAR MIXED MODELS