Project measure / variable:   Jaxpheno2   liver16

ID, description, units MPD:22721   liver16   liver weight   [g]  at age 16wks  
Data set, strains Jaxpheno2   inbred   9 strains     sex: both     age: 16wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Jaxpheno2 - liver weight at age 16wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested9 strains9 strains
Mean of the strain means1.21   g 1.45   g
Median of the strain means1.27   g 1.41   g
SD of the strain means± 0.187 ± 0.129
Coefficient of variation (CV)0.155 0.0892
Min–max range of strain means0.823   –   1.41   g 1.28   –   1.69   g
Mean sample size per strain7.1   mice 7.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2.3747 2.3747 62.0774 < 0.0001
strain 8 1.9814 0.2477 6.4744 < 0.0001
sex:strain 8 0.9294 0.1162 3.037 0.0038
Residuals 121 4.6288 0.0383


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6D2F1/J f 1.34 0.123   4 0.0614 0.0918 1.2, 1.48 0.71
B6D2F1/J m 1.61 0.163   5 0.073 0.102 1.33, 1.75 1.23
BALB/cByJ f 1.41 0.164   10 0.0517 0.116 1.15, 1.64 1.09
BALB/cByJ m 1.41 0.455   10 0.144 0.323 0.164, 1.67 -0.32
C3H/HeJ f 0.823 0.412   5 0.184 0.5 0.097, 1.08 -2.05
C3H/HeJ m 1.28 0.164   5 0.0732 0.128 0.991, 1.37 -1.32
C57BL/6J f 1.04 0.111   15 0.0286 0.106 0.857, 1.3 -0.89
C57BL/6J m 1.44 0.107   15 0.0277 0.0742 1.23, 1.57 -0.09
CBA/J f 1.27 0.183   10 0.0578 0.144 0.956, 1.54 0.34
CBA/J m 1.49 0.108   10 0.034 0.072 1.31, 1.65 0.3
DBA/2J f 1.36 0.135   5 0.0602 0.0991 1.14, 1.45 0.82
DBA/2J m 1.33 0.12   5 0.0539 0.0907 1.14, 1.43 -0.94
FVB/NJ f 1.21 0.0781   5 0.0349 0.0645 1.13, 1.3 0.02
FVB/NJ m 1.4 0.112   5 0.0501 0.08 1.22, 1.53 -0.4
NOD.CB17-Prkdcscid/J f 1.11 0.0981   5 0.0439 0.0887 0.934, 1.18 -0.52
NOD.CB17-Prkdcscid/J m 1.41 0.0627   5 0.028 0.0443 1.33, 1.48 -0.32
NOD/ShiLtJ f 1.3 0.192   10 0.0607 0.147 1.05, 1.74 0.5
NOD/ShiLtJ m 1.69 0.17   10 0.0537 0.1 1.5, 1.98 1.85


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J f 1.3375 0.0978 1.5311 1.1439
B6D2F1/J m 1.606 0.0875 1.7792 1.4328
BALB/cByJ f 1.413 0.0619 1.5354 1.2906
BALB/cByJ m 1.4084 0.0619 1.5308 1.286
C3H/HeJ f 0.8234 0.0875 0.9966 0.6502
C3H/HeJ m 1.2822 0.0875 1.4554 1.109
C57BL/6J f 1.0388 0.0505 1.1388 0.9388
C57BL/6J m 1.4433 0.0505 1.5433 1.3434
CBA/J f 1.2666 0.0619 1.389 1.1442
CBA/J m 1.493 0.0619 1.6154 1.3706
DBA/2J f 1.36 0.0875 1.5332 1.1868
DBA/2J m 1.328 0.0875 1.5012 1.1548
FVB/NJ f 1.21 0.0875 1.3832 1.0368
FVB/NJ m 1.4 0.0875 1.5732 1.2268
NOD.CB17-Prkdcscid/J f 1.1068 0.0875 1.28 0.9336
NOD.CB17-Prkdcscid/J m 1.414 0.0875 1.5872 1.2408
NOD/ShiLtJ f 1.302 0.0619 1.4244 1.1796
NOD/ShiLtJ m 1.694 0.0619 1.8164 1.5716


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6D2F1/J both 1.4718 0.0656 1.6016 1.3419
BALB/cByJ both 1.4107 0.0437 1.4973 1.3241
C3H/HeJ both 1.0528 0.0619 1.1752 0.9304
C57BL/6J both 1.2411 0.0357 1.3118 1.1704
CBA/J both 1.3798 0.0437 1.4664 1.2932
DBA/2J both 1.344 0.0619 1.4664 1.2216
FVB/NJ both 1.305 0.0619 1.4274 1.1826
NOD.CB17-Prkdcscid/J both 1.2604 0.0619 1.3828 1.138
NOD/ShiLtJ both 1.498 0.0437 1.5846 1.4114




  GWAS USING LINEAR MIXED MODELS