Project measure / variable:   Jaxpheno2   liver8

ID, description, units MPD:22720   liver8   liver weight   [g]  at age 8wks  
Data set, strains Jaxpheno2   inbred   11 strains     sex: both     age: 8wks
Procedure organ weights
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  STRAIN COMPARISON PLOT
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Jaxpheno2 - liver weight at age 8wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means1.02   g 1.30   g
Median of the strain means1.04   g 1.31   g
SD of the strain means± 0.119 ± 0.0957
Coefficient of variation (CV)0.116 0.0735
Min–max range of strain means0.803   –   1.16   g 1.13   –   1.42   g
Mean sample size per strain7.9   mice 8.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3.4832 3.4832 200.928 < 0.0001
strain 10 1.7803 0.178 10.2698 < 0.0001
sex:strain 10 0.3394 0.0339 1.958 0.0408
Residuals 169 2.9297 0.0173


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.129P2-Apoetm1Unc/J f 0.803 0.402   5 0.18 0.501 0.0956, 1.07 -1.82
B6.129P2-Apoetm1Unc/J m 1.27 0.158   5 0.0706 0.124 1.06, 1.43 -0.34
B6D2F1/J f 1.14 0.0852   6 0.0348 0.0746 1.05, 1.26 1.03
B6D2F1/J m 1.42 0.061   5 0.0273 0.043 1.31, 1.45 1.23
BALB/cByJ f 1.14 0.24   10 0.0758 0.209 0.886, 1.75 1.03
BALB/cByJ m 1.37 0.0647   10 0.0205 0.0473 1.28, 1.47 0.7
BALB/cJ f 0.992 0.0606   10 0.0192 0.0611 0.928, 1.12 -0.22
BALB/cJ m 1.16 0.114   10 0.036 0.098 0.976, 1.32 -1.49
C3H/HeJ f 1.07 0.13   5 0.058 0.121 0.941, 1.24 0.44
C3H/HeJ m 1.31 0.149   5 0.0668 0.114 1.16, 1.55 0.08
C57BL/6J f 0.913 0.0862   15 0.0223 0.0944 0.8, 1.11 -0.89
C57BL/6J m 1.27 0.124   15 0.0319 0.0972 1.03, 1.57 -0.34
CBA/J f 1.16 0.105   10 0.0331 0.0905 1.05, 1.4 1.2
CBA/J m 1.41 0.0963   15 0.0249 0.0681 1.24, 1.55 1.12
DBA/2J f 0.903 0.0814   10 0.0257 0.0902 0.774, 1.02 -0.97
DBA/2J m 1.13 0.065   15 0.0168 0.0575 0.989, 1.22 -1.8
FVB/NJ f 1.04 0.054   5 0.0242 0.0518 0.949, 1.09 0.18
FVB/NJ m 1.27 0.171   5 0.0766 0.135 1.01, 1.41 -0.34
NOD.CB17-Prkdcscid/J f 0.93 0.0596   5 0.0266 0.064 0.853, 0.992 -0.74
NOD.CB17-Prkdcscid/J m 1.39 0.103   5 0.046 0.0741 1.22, 1.48 0.91
NOD/ShiLtJ f 1.11 0.155   10 0.049 0.139 0.914, 1.37 0.77
NOD/ShiLtJ m 1.33 0.151   10 0.0477 0.113 1.15, 1.61 0.28


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J f 0.8027 0.0589 0.919 0.6865
B6.129P2-Apoetm1Unc/J m 1.27 0.0589 1.3862 1.1538
B6D2F1/J f 1.1417 0.0538 1.2478 1.0356
B6D2F1/J m 1.418 0.0589 1.5342 1.3018
BALB/cByJ f 1.1444 0.0416 1.2266 1.0622
BALB/cByJ m 1.366 0.0416 1.4482 1.2838
BALB/cJ f 0.9925 0.0416 1.0747 0.9103
BALB/cJ m 1.1636 0.0416 1.2458 1.0814
C3H/HeJ f 1.0728 0.0589 1.189 0.9566
C3H/HeJ m 1.306 0.0589 1.4222 1.1898
C57BL/6J f 0.9133 0.034 0.9804 0.8462
C57BL/6J m 1.2713 0.034 1.3384 1.2042
CBA/J f 1.156 0.0416 1.2382 1.0738
CBA/J m 1.414 0.034 1.4811 1.3469
DBA/2J f 0.9026 0.0416 0.9848 0.8204
DBA/2J m 1.1299 0.034 1.197 1.0628
FVB/NJ f 1.0418 0.0589 1.158 0.9256
FVB/NJ m 1.27 0.0589 1.3862 1.1538
NOD.CB17-Prkdcscid/J f 0.9302 0.0589 1.0464 0.814
NOD.CB17-Prkdcscid/J m 1.39 0.0589 1.5062 1.2738
NOD/ShiLtJ f 1.1148 0.0416 1.197 1.0326
NOD/ShiLtJ m 1.332 0.0416 1.4142 1.2498


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J both 1.0364 0.0416 1.1186 0.9542
B6D2F1/J both 1.2798 0.0399 1.3585 1.2011
BALB/cByJ both 1.2552 0.0294 1.3133 1.1971
BALB/cJ both 1.078 0.0294 1.1362 1.0199
C3H/HeJ both 1.1894 0.0416 1.2716 1.1072
C57BL/6J both 1.0923 0.024 1.1398 1.0448
CBA/J both 1.285 0.0269 1.3381 1.2319
DBA/2J both 1.0163 0.0269 1.0693 0.9632
FVB/NJ both 1.1559 0.0416 1.2381 1.0737
NOD.CB17-Prkdcscid/J both 1.1601 0.0416 1.2423 1.0779
NOD/ShiLtJ both 1.2234 0.0294 1.2815 1.1653




  GWAS USING LINEAR MIXED MODELS