Project measure / variable:   Brown2   vis_acuit32

ID, description, units MPD:22569   vis_acuit32   latency to reach cued platform   [s]  grating threshold 0.32  
Data set, strains Brown2   inbred   14 strains     sex: both     age: 10-18wks
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  STRAIN COMPARISON PLOT
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Brown2 - latency to reach cued platform grating threshold 0.32



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains14 strains
Mean of the strain means17.7   s 16.1   s
Median of the strain means13.7   s 12.9   s
SD of the strain means± 11.9 ± 8.34
Coefficient of variation (CV)0.672 0.516
Min–max range of strain means6.99   –   41.3   s 7.31   –   33.3   s
Mean sample size per strain6.2   mice 7.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.4894 0.4894 0.0068 0.9343
strain 11 12637.4536 1148.8594 15.9986 < 0.0001
sex:strain 11 1223.1075 111.1916 1.5484 0.1216
Residuals 133 9550.7375 71.8101


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 10.5 3.0   2   2.12 0.286 8.36, 12.6 -0.61
129S1/SvImJ m 22.2 18.0   6 7.34 0.811 10.4, 57.4 0.73
A/J f 31.0 15.7   5 7.04 0.507 18.4, 57.3 1.11
A/J m 22.9 11.6   10 3.68 0.508 8.97, 45.5 0.81
AKR/J m 10.5 3.66   13 1.02 0.348 5.9, 18.7 -0.68
BALB/cByJ f 41.3 14.2   4 7.09 0.343 28.8, 56.9 1.98
BALB/cByJ m 27.9 6.04   6 2.47 0.217 20.2, 37.5 1.41
BALB/cJ f 36.5 15.4   7 5.83 0.422 11.2, 60.0 1.58
BALB/cJ m 33.3 10.2   6 4.17 0.306 23.5, 48.5 2.06
C3H/HeJ f 12.8 4.62   7 1.75 0.36 8.33, 21.9 -0.41
C3H/HeJ m 18.2 4.23   8 1.5 0.232 11.5, 22.9 0.25
C57BL/6J f 8.16 2.13   6 0.87 0.261 5.29, 10.6 -0.8
C57BL/6J m 8.3 1.91   10 0.604 0.23 5.91, 11.8 -0.94
CAST/EiJ f 7.33 0.751   4 0.375 0.102 6.5, 8.09 -0.87
CAST/EiJ m 9.37 2.4   6 0.981 0.257 7.29, 13.4 -0.81
DBA/2J f 6.99 1.75   10 0.553 0.25 4.08, 9.48 -0.9
DBA/2J m 10.9 8.0   6 3.27 0.735 5.15, 25.6 -0.63
FVB/NJ f 14.6 8.01   4 4.0 0.547 7.47, 26.1 -0.26
FVB/NJ m 9.38 2.36   4 1.18 0.252 7.0, 12.3 -0.81
MOLF/EiJ f 17.3 12.0   10 3.8 0.696 6.63, 46.2 -0.04
MOLF/EiJ m 22.2 11.6   5 5.18 0.521 8.27, 37.0 0.73
SJL/J f 17.1 2.57   6 1.05 0.151 13.2, 20.0 -0.05
SJL/J m 14.8 3.05   9 1.02 0.207 8.71, 19.5 -0.16
SM/J f 9.13 4.02   9 1.34 0.44 3.06, 16.6 -0.72
SM/J m 7.31 1.98   7 0.747 0.27 5.08, 10.3 -1.06
SPRET/EiJ m 8.71 4.19   10 1.33 0.482 4.33, 15.3 -0.89


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 10.48 5.9921 22.3321 0.0
129S1/SvImJ m 22.15 3.4595 28.9928 15.3072
A/J f 31.0 3.7897 38.4959 23.5041
A/J m 22.867 2.6797 28.1674 17.5666
BALB/cByJ f 41.3 4.237 49.6807 32.9193
BALB/cByJ m 27.8667 3.4595 34.7095 21.0239
BALB/cJ f 36.5 3.2029 42.8352 30.1648
BALB/cJ m 33.3333 3.4595 40.1761 26.4905
C3H/HeJ f 12.8257 3.2029 19.1609 6.4905
C3H/HeJ m 18.25 2.996 24.1761 12.3239
C57BL/6J f 8.1567 3.4595 14.9995 1.3139
C57BL/6J m 8.304 2.6797 13.6044 3.0036
CAST/EiJ f 7.3275 4.237 15.7082 0.0
CAST/EiJ m 9.3667 3.4595 16.2095 2.5239
DBA/2J f 6.993 2.6797 12.2934 1.6926
DBA/2J m 10.8817 3.4595 17.7245 4.0389
FVB/NJ f 14.6425 4.237 23.0232 6.2618
FVB/NJ m 9.375 4.237 17.7557 0.9943
MOLF/EiJ f 17.267 2.6797 22.5674 11.9666
MOLF/EiJ m 22.194 3.7897 29.6899 14.6981
SJL/J f 17.0667 3.4595 23.9095 10.2239
SJL/J m 14.7567 2.8247 20.3438 9.1695
SM/J f 9.1278 2.8247 14.7149 3.5406
SM/J m 7.3129 3.2029 13.6481 0.9776


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 16.315 3.4595 23.1578 9.4722
A/J both 26.9335 2.3207 31.5238 22.3432
BALB/cByJ both 34.5833 2.735 39.9931 29.1736
BALB/cJ both 34.9167 2.3573 39.5793 30.2541
C3H/HeJ both 15.5379 2.1929 19.8753 11.2004
C57BL/6J both 8.2303 2.188 12.5581 3.9026
CAST/EiJ both 8.3471 2.735 13.7568 2.9374
DBA/2J both 8.9373 2.188 13.2651 4.6096
FVB/NJ both 12.0087 2.996 17.9348 6.0827
MOLF/EiJ both 19.7305 2.3207 24.3208 15.1402
SJL/J both 15.9117 2.2331 20.3287 11.4946
SM/J both 8.2203 2.1353 12.4438 3.9968




  GWAS USING LINEAR MIXED MODELS