Project measure / variable:   Brown2   vis_acuit64

ID, description, units MPD:22558   vis_acuit64   latency to reach cued platform   [s]  grating threshold 0.64 (high)  
Data set, strains Brown2   inbred   14 strains     sex: both     age: 10-18wks
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  STRAIN COMPARISON PLOT
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Brown2 - latency to reach cued platform grating threshold 0.64 (high)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains14 strains
Mean of the strain means20.9   s 19.1   s
Median of the strain means16.4   s 18.1   s
SD of the strain means± 10.9 ± 6.77
Coefficient of variation (CV)0.522 0.355
Min–max range of strain means11.4   –   42.8   s 10.3   –   29.4   s
Mean sample size per strain6.2   mice 7.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.2679 0.2679 0.0033 0.9545
strain 11 9226.1836 838.744 10.2188 < 0.0001
sex:strain 11 1786.9774 162.4525 1.9792 0.0352
Residuals 133 10916.4411 82.0785


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 14.3 5.66   2   4.0 0.396 10.3, 18.3 -0.6
129S1/SvImJ m 27.2 16.1   6 6.59 0.592 19.0, 60.0 1.2
A/J f 34.8 15.5   5 6.95 0.447 20.4, 59.0 1.28
A/J m 29.4 13.5   10 4.27 0.459 13.9, 56.1 1.52
AKR/J m 15.3 3.95   13 1.1 0.258 9.86, 21.9 -0.56
BALB/cByJ f 42.8 17.2   4 8.6 0.402 25.5, 59.6 2.01
BALB/cByJ m 25.7 4.05   6 1.65 0.157 18.5, 29.9 0.97
BALB/cJ f 37.1 12.3   7 4.64 0.331 19.1, 51.3 1.49
BALB/cJ m 29.3 9.74   6 3.98 0.333 18.5, 42.7 1.51
C3H/HeJ f 19.0 8.66   7 3.27 0.455 9.96, 35.3 -0.17
C3H/HeJ m 20.9 9.86   8 3.49 0.471 9.94, 36.0 0.27
C57BL/6J f 11.4 3.07   6 1.26 0.269 8.22, 16.4 -0.87
C57BL/6J m 13.9 5.32   10 1.68 0.383 7.02, 21.8 -0.77
CAST/EiJ f 15.4 3.74   4 1.87 0.243 9.86, 18.2 -0.5
CAST/EiJ m 13.7 2.54   6 1.04 0.185 11.1, 17.9 -0.8
DBA/2J f 12.2 3.4   10 1.07 0.279 7.62, 17.6 -0.8
DBA/2J m 21.3 16.7   6 6.82 0.782 6.22, 50.9 0.32
FVB/NJ f 16.0 8.56   4 4.28 0.534 9.03, 26.6 -0.45
FVB/NJ m 13.0 7.43   4 3.71 0.573 8.31, 24.0 -0.9
MOLF/EiJ f 16.9 8.07   10 2.55 0.478 7.64, 32.1 -0.37
MOLF/EiJ m 21.6 10.6   5 4.73 0.49 9.58, 38.5 0.37
SJL/J f 19.2 2.76   6 1.13 0.144 15.5, 22.0 -0.16
SJL/J m 13.4 3.3   9 1.1 0.246 7.63, 18.8 -0.84
SM/J f 11.6 2.62   9 0.874 0.226 6.66, 14.8 -0.85
SM/J m 10.3 2.2   7 0.833 0.214 8.27, 13.3 -1.3
SPRET/EiJ m 12.4 2.89   10 0.914 0.233 7.76, 18.1 -0.99


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 14.3 6.4062 26.9712 1.6288
129S1/SvImJ m 27.2333 3.6986 34.549 19.9176
A/J f 34.78 4.0516 42.794 26.766
A/J m 29.42 2.8649 35.0867 23.7533
BALB/cByJ f 42.75 4.5299 51.7099 33.7901
BALB/cByJ m 25.7167 3.6986 33.0324 18.401
BALB/cJ f 37.1 3.4243 43.873 30.327
BALB/cJ m 29.2667 3.6986 36.5824 21.951
C3H/HeJ f 19.0229 3.4243 25.7959 12.2498
C3H/HeJ m 20.9175 3.2031 27.2531 14.5819
C57BL/6J f 11.4217 3.6986 18.7374 4.106
C57BL/6J m 13.91 2.8649 19.5767 8.2433
CAST/EiJ f 15.365 4.5299 24.3249 6.4051
CAST/EiJ m 13.7167 3.6986 21.0324 6.401
DBA/2J f 12.174 2.8649 17.8407 6.5073
DBA/2J m 21.35 3.6986 28.6657 14.0343
FVB/NJ f 16.035 4.5299 24.9949 7.0751
FVB/NJ m 12.9575 4.5299 21.9174 3.9976
MOLF/EiJ f 16.894 2.8649 22.5607 11.2273
MOLF/EiJ m 21.556 4.0516 29.57 13.542
SJL/J f 19.1833 3.6986 26.499 11.8676
SJL/J m 13.3922 3.0199 19.3655 7.419
SM/J f 11.6244 3.0199 17.5977 5.6512
SM/J m 10.31 3.4243 17.083 3.537


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 20.7667 3.6986 28.0824 13.451
A/J both 32.1 2.4811 37.0075 27.1925
BALB/cByJ both 34.2333 2.924 40.0169 28.4498
BALB/cJ both 33.1833 2.5202 38.1682 28.1985
C3H/HeJ both 19.9702 2.3444 24.6074 15.333
C57BL/6J both 12.6658 2.3392 17.2927 8.039
CAST/EiJ both 14.5408 2.924 20.3244 8.7573
DBA/2J both 16.762 2.3392 21.3889 12.1351
FVB/NJ both 14.4963 3.2031 20.8318 8.1607
MOLF/EiJ both 19.225 2.4811 24.1325 14.3175
SJL/J both 16.2878 2.3874 21.0101 11.5655
SM/J both 10.9672 2.2828 15.4826 6.4519




  GWAS USING LINEAR MIXED MODELS