Project measure / variable:   Brown2   vis_acuit17

ID, description, units MPD:22557   vis_acuit17   latency to reach cued platform   [s]  grating threshold 0.17 (low)  
Data set, strains Brown2   inbred   14 strains     sex: both     age: 10-18wks
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  STRAIN COMPARISON PLOT
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Brown2 - latency to reach cued platform grating threshold 0.17 (low)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested12 strains14 strains
Mean of the strain means15.8   s 15.7   s
Median of the strain means12.8   s 13.8   s
SD of the strain means± 11.2 ± 9.04
Coefficient of variation (CV)0.705 0.577
Min–max range of strain means4.93   –   36.7   s 6.35   –   33.5   s
Mean sample size per strain6.2   mice 7.4   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 54.7169 54.7169 0.9261 0.3376
strain 11 13165.8211 1196.8928 20.2574 < 0.0001
sex:strain 11 749.8032 68.1639 1.1537 0.3255
Residuals 133 7858.1864 59.0841


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 8.23 3.63   2   2.57 0.44 5.67, 10.8 -0.68
129S1/SvImJ m 21.6 19.3   6 7.87 0.891 7.12, 60.0 0.66
A/J f 28.8 16.8   5 7.53 0.584 10.2, 54.9 1.16
A/J m 19.8 11.4   10 3.61 0.578 8.79, 38.6 0.46
AKR/J m 7.29 1.75   13 0.484 0.24 4.78, 11.3 -0.93
BALB/cByJ f 36.7 19.3   4 9.66 0.526 17.9, 56.1 1.87
BALB/cByJ m 32.8 15.2   6 6.22 0.465 19.3, 56.6 1.9
BALB/cJ f 34.2 6.66   7 2.52 0.195 22.5, 43.2 1.64
BALB/cJ m 33.5 2.95   6 1.2 0.0879 30.3, 38.2 1.97
C3H/HeJ f 14.8 3.84   7 1.45 0.259 10.5, 22.8 -0.09
C3H/HeJ m 17.5 4.23   8 1.49 0.242 10.6, 24.2 0.2
C57BL/6J f 6.12 1.37   6 0.56 0.224 4.58, 7.93 -0.87
C57BL/6J m 6.35 2.64   10 0.833 0.415 3.84, 13.3 -1.03
CAST/EiJ f 6.91 0.882   4 0.441 0.128 5.6, 7.45 -0.8
CAST/EiJ m 9.24 2.92   6 1.19 0.316 7.42, 15.1 -0.71
DBA/2J f 4.93 0.97   10 0.307 0.197 3.52, 6.17 -0.98
DBA/2J m 7.45 3.02   6 1.23 0.406 3.64, 10.9 -0.91
FVB/NJ f 11.3 4.24   4 2.12 0.376 8.87, 17.6 -0.41
FVB/NJ m 13.5 4.1   4 2.05 0.304 9.69, 19.0 -0.24
MOLF/EiJ f 14.2 4.7   10 1.49 0.331 7.75, 24.5 -0.15
MOLF/EiJ m 19.2 4.12   5 1.84 0.215 16.4, 26.3 0.39
SJL/J f 15.6 4.15   6 1.69 0.265 11.7, 22.3 -0.02
SJL/J m 14.2 3.86   9 1.29 0.271 8.82, 21.0 -0.16
SM/J f 8.35 3.84   9 1.28 0.459 3.89, 14.5 -0.67
SM/J m 6.83 1.33   7 0.502 0.194 5.05, 8.97 -0.98
SPRET/EiJ m 10.1 3.56   10 1.12 0.351 5.89, 16.1 -0.62


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 8.235 5.4353 18.9857 0.0
129S1/SvImJ m 21.6367 3.138 27.8436 15.4297
A/J f 28.82 3.4376 35.6194 22.0206
A/J m 19.767 2.4307 24.5749 14.9591
BALB/cByJ f 36.725 3.8433 44.3269 29.1231
BALB/cByJ m 32.75 3.138 38.9569 26.5431
BALB/cJ f 34.1714 2.9053 39.9179 28.4249
BALB/cJ m 33.5 3.138 39.7069 27.2931
C3H/HeJ f 14.7857 2.9053 20.5322 9.0392
C3H/HeJ m 17.475 2.7176 22.8504 12.0996
C57BL/6J f 6.1183 3.138 12.3253 0.0
C57BL/6J m 6.35 2.4307 11.1579 1.5421
CAST/EiJ f 6.915 3.8433 14.5169 0.0
CAST/EiJ m 9.2383 3.138 15.4453 3.0314
DBA/2J f 4.933 2.4307 9.7409 0.1251
DBA/2J m 7.4467 3.138 13.6536 1.2397
FVB/NJ f 11.2575 3.8433 18.8594 3.6556
FVB/NJ m 13.5225 3.8433 21.1244 5.9206
MOLF/EiJ f 14.196 2.4307 19.0039 9.3881
MOLF/EiJ m 19.18 3.4376 25.9794 12.3806
SJL/J f 15.65 3.138 21.8569 9.4431
SJL/J m 14.2356 2.5622 19.3035 9.1676
SM/J f 8.3544 2.5622 13.4224 3.2865
SM/J m 6.83 2.9053 12.5765 1.0835


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 14.9358 3.138 21.1428 8.7289
A/J both 24.2935 2.1051 28.4572 20.1298
BALB/cByJ both 34.7375 2.4808 39.6445 29.8305
BALB/cJ both 33.8357 2.1382 38.065 29.6064
C3H/HeJ both 16.1304 1.9891 20.0647 12.196
C57BL/6J both 6.2342 1.9847 10.1598 2.3086
CAST/EiJ both 8.0767 2.4808 12.9837 3.1697
DBA/2J both 6.1898 1.9847 10.1154 2.2642
FVB/NJ both 12.39 2.7176 17.7654 7.0146
MOLF/EiJ both 16.688 2.1051 20.8517 12.5243
SJL/J both 14.9428 2.0256 18.9493 10.9362
SM/J both 7.5922 1.9368 11.4232 3.7612




  GWAS USING LINEAR MIXED MODELS