Project measure / variable:   Brown2   acq_lat_d4

ID, description, units MPD:22516   acq_lat_d4   acquisition training mean latency to escape   [s]  day4  
Data set, strains Brown2   inbred   13 strains     sex: both     age: 10-18wks
Procedure Barnes circular maze
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  STRAIN COMPARISON PLOT
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Brown2 - acquisition training mean latency to escape day4



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested13 strains13 strains
Mean of the strain means104   s 118   s
Median of the strain means104   s 103   s
SD of the strain means± 57.6 ± 70.5
Coefficient of variation (CV)0.556 0.595
Min–max range of strain means18.6   –   233   s 33.7   –   261   s
Mean sample size per strain11.6   mice 11.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 24425.1322 24425.1322 5.1677 0.0238
strain 12 1148788.274 95732.3562 20.2543 < 0.0001
sex:strain 12 96944.9892 8078.7491 1.7092 0.0643
Residuals 283 1337608.0136 4726.5301


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 174.0 124.0   12 35.7 0.711 17.5, 300.0 1.22
129S1/SvImJ m 237.0 69.1   12 19.9 0.292 63.1, 300.0 1.68
A/J f 233.0 60.9   12 17.6 0.261 135.0, 300.0 2.24
A/J m 261.0 46.9   18 11.0 0.179 159.0, 300.0 2.02
AKR/J f 106.0 100.0   12 29.0 0.944 19.5, 300.0 0.04
AKR/J m 126.0 87.1   12 25.2 0.692 30.6, 259.0 0.11
BALB/cByJ f 78.0 68.8   21 15.0 0.883 7.92, 300.0 -0.45
BALB/cByJ m 78.5 52.8   12 15.2 0.672 14.3, 161.0 -0.57
BALB/cJ f 78.9 52.2   14 14.0 0.662 13.4, 169.0 -0.43
BALB/cJ m 103.0 95.5   10 30.2 0.925 6.39, 271.0 -0.22
C3H/HeJ f 101.0 77.1   10 24.4 0.761 24.7, 270.0 -0.05
C3H/HeJ m 148.0 87.4   10 27.7 0.591 36.6, 274.0 0.42
C57BL/6J f 28.6 26.5   11 7.98 0.925 7.73, 102.0 -1.3
C57BL/6J m 33.7 25.2   12 7.28 0.748 13.7, 99.0 -1.2
CAST/EiJ f 18.6 6.23   4 3.11 0.335 9.52, 23.5 -1.48
CAST/EiJ m 34.2 27.0   12 7.78 0.788 10.4, 110.0 -1.2
DBA/2J f 138.0 78.1   12 22.5 0.566 46.5, 300.0 0.6
DBA/2J m 51.9 36.6   11 11.0 0.705 24.1, 153.0 -0.94
FVB/NJ f 119.0 70.6   11 21.3 0.592 36.6, 251.0 0.27
FVB/NJ m 167.0 99.3   12 28.7 0.593 28.6, 294.0 0.69
MOLF/EiJ f 53.9 28.8   12 8.32 0.534 21.8, 121.0 -0.86
MOLF/EiJ m 93.5 64.1   11 19.3 0.686 21.0, 222.0 -0.35
SJL/J f 104.0 37.0   12 10.7 0.357 42.1, 167.0 0.01
SJL/J m 90.7 51.7   12 14.9 0.57 28.0, 224.0 -0.39
SM/J f 115.0 67.9   10 21.5 0.589 30.6, 258.0 0.2
SM/J m 116.0 86.2   12 24.9 0.743 12.4, 243.0 -0.04


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 174.125 19.8463 213.1902 135.0598
129S1/SvImJ m 237.0083 19.8463 276.0735 197.9431
A/J f 233.0833 19.8463 272.1485 194.0181
A/J m 261.1111 16.2045 293.0077 229.2145
AKR/J f 106.2833 19.8463 145.3485 67.2181
AKR/J m 125.9583 19.8463 165.0235 86.8931
BALB/cByJ f 77.9867 15.0024 107.5172 48.4562
BALB/cByJ m 78.525 19.8463 117.5902 39.4598
BALB/cJ f 78.8643 18.3741 115.0316 42.6969
BALB/cJ m 103.249 21.7406 146.0428 60.4552
C3H/HeJ f 101.31 21.7406 144.1038 58.5162
C3H/HeJ m 147.9 21.7406 190.6938 105.1062
C57BL/6J f 28.6118 20.7288 69.4141 0.0
C57BL/6J m 33.725 19.8463 72.7902 0.0
CAST/EiJ f 18.605 34.3749 86.2679 0.0
CAST/EiJ m 34.2167 19.8463 73.2819 0.0
DBA/2J f 137.9167 19.8463 176.9819 98.8515
DBA/2J m 51.9182 20.7288 92.7204 11.1159
FVB/NJ f 119.2545 20.7288 160.0568 78.4523
FVB/NJ m 167.4833 19.8463 206.5485 128.4181
MOLF/EiJ f 53.9333 19.8463 92.9985 14.8681
MOLF/EiJ m 93.4545 20.7288 134.2568 52.6523
SJL/J f 103.7167 19.8463 142.7819 64.6515
SJL/J m 90.6833 19.8463 129.7485 51.6181
SM/J f 115.39 21.7406 158.1838 72.5962
SM/J m 115.8917 19.8463 154.9569 76.8265


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 205.5667 14.0335 233.1899 177.9434
A/J both 247.0972 12.8108 272.3137 221.8807
AKR/J both 116.1208 14.0335 143.7441 88.4976
BALB/cByJ both 78.2558 12.4394 102.7412 53.7704
BALB/cJ both 91.0566 14.2326 119.0717 63.0415
C3H/HeJ both 124.605 15.3729 154.8648 94.3452
C57BL/6J both 31.1684 14.3489 59.4125 2.9243
CAST/EiJ both 26.4108 19.8463 65.476 0.0
DBA/2J both 94.9174 14.3489 123.1615 66.6733
FVB/NJ both 143.3689 14.3489 171.613 115.1249
MOLF/EiJ both 73.6939 14.3489 101.938 45.4499
SJL/J both 97.2 14.0335 124.8233 69.5767
SM/J both 115.6408 14.7184 144.6124 86.6693




  GWAS USING LINEAR MIXED MODELS