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Project measure / variable:   Brown2   acq_lat_d1

ID, description, units MPD:22515   acq_lat_d1   acquisition training mean latency to escape   [s]  day1  
Data set, strains Brown2   inbred   13 strains     sex: both     age: 10-18wks
Procedure Barnes circular maze
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  STRAIN COMPARISON PLOT
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Brown2 - acquisition training mean latency to escape day1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested13 strains13 strains
Mean of the strain means193   s 177   s
Median of the strain means192   s 180   s
SD of the strain means± 64.9 ± 60.8
Coefficient of variation (CV)0.336 0.343
Min–max range of strain means74.3   –   286   s 75.9   –   284   s
Mean sample size per strain11.6   mice 11.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 15006.7161 15006.7161 3.4272 0.0652
strain 12 1027123.408 85593.6173 19.5475 < 0.0001
sex:strain 12 48389.8957 4032.4913 0.9209 0.5263
Residuals 283 1239184.0629 4378.7423


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 229.0 78.8   12 22.7 0.344 72.2, 300.0 0.55
129S1/SvImJ m 184.0 87.8   12 25.4 0.476 59.1, 300.0 0.11
A/J f 286.0 24.8   12 7.16 0.0868 229.0, 300.0 1.43
A/J m 284.0 57.4   18 13.5 0.202 55.8, 300.0 1.76
AKR/J f 255.0 55.7   12 16.1 0.218 136.0, 300.0 0.95
AKR/J m 242.0 56.3   12 16.3 0.233 111.0, 300.0 1.07
BALB/cByJ f 152.0 70.5   21 15.4 0.464 25.4, 300.0 -0.63
BALB/cByJ m 134.0 63.0   12 18.2 0.47 62.4, 297.0 -0.71
BALB/cJ f 179.0 89.4   14 23.9 0.498 53.7, 300.0 -0.22
BALB/cJ m 168.0 68.9   10 21.8 0.41 64.0, 300.0 -0.15
C3H/HeJ f 232.0 73.4   10 23.2 0.317 106.0, 300.0 0.6
C3H/HeJ m 180.0 84.2   10 26.6 0.467 55.5, 275.0 0.05
C57BL/6J f 80.2 50.0   11 15.1 0.623 29.5, 201.0 -1.74
C57BL/6J m 93.5 56.6   12 16.3 0.605 40.5, 177.0 -1.38
CAST/EiJ f 74.3 88.1   4 44.0 1.18 18.8, 204.0 -1.83
CAST/EiJ m 75.9 56.3   12 16.2 0.741 23.0, 225.0 -1.67
DBA/2J f 192.0 72.7   12 21.0 0.379 41.7, 300.0 -0.02
DBA/2J m 137.0 50.6   11 15.2 0.37 59.0, 231.0 -0.66
FVB/NJ f 209.0 31.1   11 9.37 0.149 148.0, 248.0 0.25
FVB/NJ m 199.0 73.7   12 21.3 0.37 73.9, 300.0 0.36
MOLF/EiJ f 177.0 66.8   12 19.3 0.377 84.8, 300.0 -0.25
MOLF/EiJ m 144.0 66.6   11 20.1 0.464 50.6, 228.0 -0.54
SJL/J f 175.0 77.2   12 22.3 0.442 68.2, 300.0 -0.28
SJL/J m 214.0 65.9   12 19.0 0.308 103.0, 300.0 0.61
SM/J f 269.0 57.0   10 18.0 0.212 135.0, 300.0 1.17
SM/J m 247.0 63.8   12 18.4 0.258 114.0, 300.0 1.15


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 228.9833 19.1022 266.5838 191.3828
129S1/SvImJ m 184.4167 19.1022 222.0172 146.8162
A/J f 285.5 19.1022 323.1005 247.8995
A/J m 284.3222 15.5969 315.0229 253.6216
AKR/J f 254.8333 19.1022 292.4338 217.2328
AKR/J m 241.8333 19.1022 279.4338 204.2328
BALB/cByJ f 152.0857 14.4399 180.509 123.6624
BALB/cByJ m 134.1 19.1022 171.7005 96.4995
BALB/cJ f 179.3429 17.6852 214.1541 144.5316
BALB/cJ m 168.03 20.9254 209.2193 126.8407
C3H/HeJ f 231.6 20.9254 272.7893 190.4107
C3H/HeJ m 180.42 20.9254 221.6093 139.2307
C57BL/6J f 80.1909 19.9516 119.4633 40.9185
C57BL/6J m 93.4833 19.1022 131.0838 55.8828
CAST/EiJ f 74.325 33.086 139.4509 9.1991
CAST/EiJ m 75.9417 19.1022 113.5422 38.3412
DBA/2J f 192.0583 19.1022 229.6588 154.4578
DBA/2J m 136.5364 19.9516 175.8088 97.2639
FVB/NJ f 208.8182 19.9516 248.0906 169.5458
FVB/NJ m 198.9083 19.1022 236.5088 161.3078
MOLF/EiJ f 177.0667 19.1022 214.6672 139.4662
MOLF/EiJ m 143.5818 19.9516 182.8542 104.3094
SJL/J f 174.5583 19.1022 212.1588 136.9578
SJL/J m 214.0833 19.1022 251.6838 176.4828
SM/J f 269.4 20.9254 310.5893 228.2107
SM/J m 246.9167 19.1022 284.5172 209.3162


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 206.7 13.5073 233.2876 180.1124
A/J both 284.9111 12.3304 309.1821 260.6401
AKR/J both 248.3333 13.5073 274.9209 221.7458
BALB/cByJ both 143.0929 11.973 166.6602 119.5255
BALB/cJ both 173.6864 13.6989 200.6511 146.7217
C3H/HeJ both 206.01 14.7965 235.1352 176.8848
C57BL/6J both 86.8371 13.8109 114.0222 59.652
CAST/EiJ both 75.1333 19.1022 112.7338 37.5328
DBA/2J both 164.2973 13.8109 191.4825 137.1122
FVB/NJ both 203.8633 13.8109 231.0484 176.6782
MOLF/EiJ both 160.3242 13.8109 187.5093 133.1391
SJL/J both 194.3208 13.5073 220.9084 167.7333
SM/J both 258.1583 14.1666 286.0436 230.2731




  GWAS USING LINEAR MIXED MODELS