Project measure / variable:   Brown2   acq_err_d1

ID, description, units MPD:22511   acq_err_d1   acquisition training mean errors   [n]  day1  
Data set, strains Brown2   inbred   13 strains     sex: both     age: 10-18wks
Procedure Barnes circular maze
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  STRAIN COMPARISON PLOT
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Brown2 - acquisition training mean errors day1



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested13 strains13 strains
Mean of the strain means19.4   n 19.2   n
Median of the strain means20.7   n 14.1   n
SD of the strain means± 9.74 ± 8.77
Coefficient of variation (CV)0.502 0.456
Min–max range of strain means5.36   –   35.6   n 11.6   –   37.2   n
Mean sample size per strain11.6   mice 11.6   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 3.9426 3.9426 0.0411 0.8396
strain 12 21405.0302 1783.7525 18.5806 < 0.0001
sex:strain 12 2095.655 174.6379 1.8191 0.0449
Residuals 283 27168.2398 96.0008


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 13.0 7.11   12 2.05 0.548 3.5, 24.2 -0.66
129S1/SvImJ m 12.9 10.1   12 2.92 0.787 1.25, 28.2 -0.72
A/J f 7.17 5.1   12 1.47 0.712 0.5, 17.2 -1.26
A/J m 11.6 6.5   18 1.53 0.558 3.75, 28.5 -0.87
AKR/J f 32.4 11.4   12 3.3 0.353 14.8, 54.2 1.34
AKR/J m 31.3 11.2   12 3.22 0.357 12.8, 47.0 1.38
BALB/cByJ f 10.8 5.71   21 1.25 0.529 1.5, 23.2 -0.88
BALB/cByJ m 12.4 8.05   12 2.32 0.648 2.25, 30.0 -0.78
BALB/cJ f 14.8 10.4   14 2.78 0.704 1.5, 38.8 -0.47
BALB/cJ m 19.5 7.87   10 2.49 0.403 9.25, 36.2 0.03
C3H/HeJ f 25.5 17.2   10 5.43 0.673 10.0, 71.5 0.63
C3H/HeJ m 14.7 6.96   10 2.2 0.472 6.75, 25.2 -0.51
C57BL/6J f 12.2 6.3   11 1.9 0.515 5.5, 25.5 -0.74
C57BL/6J m 13.0 6.44   12 1.86 0.494 4.25, 22.0 -0.71
CAST/EiJ f 5.36 5.84   4 2.92 1.09 0.75, 13.7 -1.44
CAST/EiJ m 13.3 11.4   12 3.28 0.856 2.75, 45.5 -0.67
DBA/2J f 20.8 10.3   12 2.97 0.493 6.0, 36.5 0.14
DBA/2J m 13.9 6.53   11 1.97 0.47 6.75, 24.5 -0.61
FVB/NJ f 35.6 11.2   11 3.38 0.315 18.5, 61.5 1.66
FVB/NJ m 30.0 14.1   12 4.07 0.469 8.75, 57.8 1.23
MOLF/EiJ f 20.7 9.75   12 2.82 0.472 8.75, 42.8 0.13
MOLF/EiJ m 14.1 9.2   11 2.77 0.65 4.5, 29.7 -0.58
SJL/J f 23.9 15.4   12 4.45 0.645 9.25, 63.5 0.46
SJL/J m 25.9 7.54   12 2.18 0.291 12.2, 35.5 0.76
SM/J f 29.9 8.09   10 2.56 0.271 16.0, 42.5 1.08
SM/J m 37.2 13.9   12 4.02 0.374 13.2, 56.0 2.05


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 12.9625 2.8284 18.5299 7.3951
129S1/SvImJ m 12.8667 2.8284 18.4341 7.2992
A/J f 7.1667 2.8284 12.7341 1.5992
A/J m 11.6389 2.3094 16.1847 7.0931
AKR/J f 32.3833 2.8284 37.9508 26.8159
AKR/J m 31.2583 2.8284 36.8258 25.6909
BALB/cByJ f 10.8024 2.1381 15.011 6.5938
BALB/cByJ m 12.425 2.8284 17.9924 6.8576
BALB/cJ f 14.75 2.6186 19.9045 9.5955
BALB/cJ m 19.525 3.0984 25.6238 13.4262
C3H/HeJ f 25.51 3.0984 31.6088 19.4112
C3H/HeJ m 14.725 3.0984 20.8238 8.6262
C57BL/6J f 12.2364 2.9542 18.0514 6.4214
C57BL/6J m 13.0167 2.8284 18.5841 7.4492
CAST/EiJ f 5.3625 4.899 15.0056 0.0
CAST/EiJ m 13.2775 2.8284 18.8449 7.7101
DBA/2J f 20.85 2.8284 26.4174 15.2826
DBA/2J m 13.8818 2.9542 19.6968 8.0668
FVB/NJ f 35.6 2.9542 41.415 29.785
FVB/NJ m 30.0208 2.8284 35.5883 24.4534
MOLF/EiJ f 20.6708 2.8284 26.2383 15.1034
MOLF/EiJ m 14.1427 2.9542 19.9577 8.3277
SJL/J f 23.8875 2.8284 29.4549 18.3201
SJL/J m 25.9167 2.8284 31.4841 20.3492
SM/J f 29.89 3.0984 35.9888 23.7912
SM/J m 37.25 2.8284 42.8174 31.6826


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 12.9146 2.0 16.8514 8.9778
A/J both 9.4028 1.8257 12.9966 5.809
AKR/J both 31.8208 2.0 35.7576 27.8841
BALB/cByJ both 11.6137 1.7728 15.1033 8.1241
BALB/cJ both 17.1375 2.0284 21.1301 13.1449
C3H/HeJ both 20.1175 2.1909 24.43 15.805
C57BL/6J both 12.6265 2.045 16.6518 8.6013
CAST/EiJ both 9.32 2.8284 14.8874 3.7526
DBA/2J both 17.3659 2.045 21.3912 13.3406
FVB/NJ both 32.8104 2.045 36.8357 28.7852
MOLF/EiJ both 17.4068 2.045 21.432 13.3815
SJL/J both 24.9021 2.0 28.8389 20.9653
SM/J both 33.57 2.0976 37.6989 29.4411




  GWAS USING LINEAR MIXED MODELS