Project measure / variable:   Jaxpheno1   pct_fat8

ID, description, units MPD:22416   pct_fat8   percent body fat, head excluded   [%]  at age 8wks  
Data set, strains Jaxpheno1   inbred   11 strains     sex: both     age: 8wks
Procedure DXA
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  STRAIN COMPARISON PLOT
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Jaxpheno1 - percent body fat, head excluded at age 8wks



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested11 strains11 strains
Mean of the strain means21.7   % 19.3   %
Median of the strain means22.2   % 18.4   %
SD of the strain means± 2.77 ± 3.87
Coefficient of variation (CV)0.127 0.201
Min–max range of strain means17.7   –   26.8   % 14.4   –   27.8   %
Mean sample size per strain7.8   mice 8.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 36.8211 36.8211 3.3655 0.0683
strain 10 1813.4633 181.3463 16.5752 < 0.0001
sex:strain 10 506.9585 50.6959 4.6336 < 0.0001
Residuals 173 1892.7667 10.9408


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
B6.129P2-Apoetm1Unc/J f 22.4 2.4   5 1.07 0.107 19.8, 25.3 0.24
B6.129P2-Apoetm1Unc/J m 18.4 0.862   5 0.385 0.0469 17.4, 19.6 -0.23
B6D2F1/J f 19.0 2.57   5 1.15 0.135 16.6, 23.3 -0.99
B6D2F1/J m 16.8 1.94   5 0.869 0.116 14.3, 18.8 -0.64
BALB/cByJ f 20.6 2.05   10 0.647 0.0991 17.8, 24.5 -0.41
BALB/cByJ m 22.8 1.81   10 0.571 0.0793 20.6, 25.8 0.91
BALB/cJ f 22.2 1.77   10 0.56 0.0798 19.7, 25.2 0.16
BALB/cJ m 20.2 2.33   10 0.735 0.115 17.4, 24.1 0.24
C3H/HeJ f 19.7 2.01   5 0.898 0.102 17.9, 23.0 -0.74
C3H/HeJ m 19.7 1.19   5 0.531 0.0601 18.5, 21.6 0.11
C57BL/6J f 17.7 2.03   20 0.454 0.115 15.1, 24.8 -1.46
C57BL/6J m 17.4 4.13   15 1.07 0.238 12.4, 25.8 -0.49
CBA/J f 22.2 4.52   10 1.43 0.203 15.5, 28.3 0.16
CBA/J m 22.0 3.92   15 1.01 0.178 16.6, 27.9 0.7
DBA/2J f 26.8 3.1   10 0.981 0.116 22.6, 31.9 1.82
DBA/2J m 27.8 5.59   15 1.44 0.201 17.8, 40.2 2.2
FVB/NJ f 25.3 1.93   5 0.864 0.0765 22.6, 27.9 1.28
FVB/NJ m 14.4 1.79   5 0.799 0.124 12.7, 17.3 -1.26
NOD.CB17-Prkdcscid/J f 23.7 3.14   5 1.41 0.133 21.4, 28.8 0.71
NOD.CB17-Prkdcscid/J m 14.8 2.04   5 0.914 0.138 12.6, 18.1 -1.16
NOD/ShiLtJ f 19.6 5.46   10 1.73 0.279 13.2, 26.3 -0.77
NOD/ShiLtJ m 17.9 2.74   10 0.865 0.152 14.1, 22.3 -0.36


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J f 22.38 1.4792 25.2997 19.4603
B6.129P2-Apoetm1Unc/J m 18.36 1.4792 21.2797 15.4403
B6D2F1/J f 18.98 1.4792 21.8997 16.0603
B6D2F1/J m 16.78 1.4792 19.6997 13.8603
BALB/cByJ f 20.65 1.046 22.7145 18.5855
BALB/cByJ m 22.76 1.046 24.8245 20.6955
BALB/cJ f 22.19 1.046 24.2545 20.1255
BALB/cJ m 20.24 1.046 22.3045 18.1755
C3H/HeJ f 19.7 1.4792 22.6197 16.7803
C3H/HeJ m 19.74 1.4792 22.6597 16.8203
C57BL/6J f 17.68 0.7396 19.1398 16.2202
C57BL/6J m 17.3733 0.854 19.059 15.6876
CBA/J f 22.23 1.046 24.2945 20.1655
CBA/J m 22.0267 0.854 23.7124 20.341
DBA/2J f 26.84 1.046 28.9045 24.7755
DBA/2J m 27.82 0.854 29.5057 26.1343
FVB/NJ f 25.26 1.4792 28.1797 22.3403
FVB/NJ m 14.36 1.4792 17.2797 11.4403
NOD.CB17-Prkdcscid/J f 23.7 1.4792 26.6197 20.7803
NOD.CB17-Prkdcscid/J m 14.78 1.4792 17.6997 11.8603
NOD/ShiLtJ f 19.57 1.046 21.6345 17.5055
NOD/ShiLtJ m 17.94 1.046 20.0045 15.8755


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
B6.129P2-Apoetm1Unc/J both 20.37 1.046 22.4345 18.3055
B6D2F1/J both 17.88 1.046 19.9445 15.8155
BALB/cByJ both 21.705 0.7396 23.1648 20.2452
BALB/cJ both 21.215 0.7396 22.6748 19.7552
C3H/HeJ both 19.72 1.046 21.7845 17.6555
C57BL/6J both 17.5267 0.5649 18.6416 16.4117
CBA/J both 22.1283 0.6752 23.461 20.7957
DBA/2J both 27.33 0.6752 28.6627 25.9973
FVB/NJ both 19.81 1.046 21.8745 17.7455
NOD.CB17-Prkdcscid/J both 19.24 1.046 21.3045 17.1755
NOD/ShiLtJ both 18.755 0.7396 20.2148 17.2952




  GWAS USING LINEAR MIXED MODELS