Phenotype measure:   Lake2   catalepsy

ID, description, units MPD:21740   catalepsy   characteristic movement with head facing upward on vertical wire grid (score 0-4)   [score]
Data set, strains Lake2   B6.A consomic w/par   23 strains     sex: both     age: 8wks
Procedure observation (SHIRPA)
Ontology mappings

  STRAIN COMPARISON PLOT
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Lake2 - characteristic movement with head facing upward on vertical wire grid (score 0-4)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means0.109   score 0.157   score
Median of the strain means0   score 0   score
SD of the strain means± 0.156 ± 0.242
Coefficient of variation (CV)1.43 1.55
Min–max range of strain means0   –   0.500   score 0   –   0.625   score
Mean sample size per strain8.3   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.1478 0.1478 0.6197 0.4317
strain 22 9.7474 0.4431 1.8577 0.0117
sex:strain 22 5.1077 0.2322 0.9734 0.4979
Residuals 335 79.9 0.2385


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 0.312 0.704   16 0.176 2.25 1.31
A/J m 0.0 0.0   8 0.0 0.0 -0.65
B6.A-Chr1 f 0.0 0.0   8 0.0 0.0 -0.7
B6.A-Chr1 m 0.0 0.0   8 0.0 0.0 -0.65
B6.A-Chr10 f 0.0 0.0   8 0.0 0.0 -0.7
B6.A-Chr10 m 0.625 1.19   8 0.42 1.9 1.93
B6.A-Chr11 f 0.0 0.0   8 0.0 0.0 -0.7
B6.A-Chr11 m 0.1 0.316   10 0.1 3.16 -0.23
B6.A-Chr12 f 0.0 0.0   8 0.0 0.0 -0.7
B6.A-Chr12 m 0.0 0.0   8 0.0 0.0 -0.65
B6.A-Chr13 f 0.0 0.0   5 0.0 0.0 -0.7
B6.A-Chr13 m 0.0 0.0   7 0.0 0.0 -0.65
B6.A-Chr14 f 0.0 0.0   8 0.0 0.0 -0.7
B6.A-Chr14 m 0.0 0.0   8 0.0 0.0 -0.65
B6.A-Chr15 f 0.5 0.926   8 0.327 1.85 2.51
B6.A-Chr15 m 0.5 0.926   8 0.327 1.85 1.42
B6.A-Chr16 f 0.0 0.0   8 0.0 0.0 -0.7
B6.A-Chr16 m 0.625 0.916   8 0.324 1.47 1.93
B6.A-Chr17 f 0.125 0.354   8 0.125 2.83 0.1
B6.A-Chr17 m 0.0 0.0   8 0.0 0.0 -0.65
B6.A-Chr18 f 0.125 0.354   8 0.125 2.83 0.1
B6.A-Chr18 m 0.5 1.41   8 0.5 2.83 1.42
B6.A-Chr19 f 0.0 0.0   8 0.0 0.0 -0.7
B6.A-Chr19 m 0.0 0.0   8 0.0 0.0 -0.65
B6.A-Chr2 f 0.375 0.518   8 0.183 1.38 1.71
B6.A-Chr2 m 0.5 0.535   8 0.189 1.07 1.42
B6.A-Chr3 f 0.375 1.06   8 0.375 2.83 1.71
B6.A-Chr3 m 0.0 0.0   8 0.0 0.0 -0.65
B6.A-Chr4 f 0.0 0.0   7 0.0 0.0 -0.7
B6.A-Chr4 m 0.0 0.0   8 0.0 0.0 -0.65
B6.A-Chr5 f 0.0 0.0   8 0.0 0.0 -0.7
B6.A-Chr5 m 0.0 0.0   8 0.0 0.0 -0.65
B6.A-Chr6 f 0.125 0.354   8 0.125 2.83 0.1
B6.A-Chr6 m 0.0 0.0   8 0.0 0.0 -0.65
B6.A-Chr7 f 0.0 0.0   8 0.0 0.0 -0.7
B6.A-Chr7 m 0.0 0.0   8 0.0 0.0 -0.65
B6.A-Chr8 f 0.25 0.707   8 0.25 2.83 0.91
B6.A-Chr8 m 0.5 0.756   8 0.267 1.51 1.42
B6.A-Chr9 f 0.25 0.707   8 0.25 2.83 0.91
B6.A-Chr9 m 0.25 0.707   8 0.25 2.83 0.39
B6.A-ChrX f 0.0 0.0   8 0.0 0.0 -0.7
B6.A-ChrX m 0.0 0.0   8 0.0 0.0 -0.65
B6.A-ChrY f 0.0 0.0   8 0.0 0.0 -0.7
B6.A-ChrY m 0.0 0.0   8 0.0 0.0 -0.65
C57BL/6J f 0.0625 0.25   16 0.0625 4.0 -0.3
C57BL/6J m 0.0 0.0   8 0.0 0.0 -0.65


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 0.3125 0.1221 0.5527 0.0723
A/J m 0.0 0.1727 0.3396 -0.3396
B6.A-Chr1 f 0.0 0.1727 0.3396 -0.3396
B6.A-Chr1 m 0.0 0.1727 0.3396 -0.3396
B6.A-Chr10 f 0.0 0.1727 0.3396 -0.3396
B6.A-Chr10 m 0.625 0.1727 0.9646 0.2854
B6.A-Chr11 f 0.0 0.1727 0.3396 -0.3396
B6.A-Chr11 m 0.1 0.1544 0.4038 -0.2038
B6.A-Chr12 f 0.0 0.1727 0.3396 -0.3396
B6.A-Chr12 m 0.0 0.1727 0.3396 -0.3396
B6.A-Chr13 f 0.0 0.2184 0.4296 -0.4296
B6.A-Chr13 m 0.0 0.1846 0.3631 -0.3631
B6.A-Chr14 f 0.0 0.1727 0.3396 -0.3396
B6.A-Chr14 m 0.0 0.1727 0.3396 -0.3396
B6.A-Chr15 f 0.5 0.1727 0.8396 0.1604
B6.A-Chr15 m 0.5 0.1727 0.8396 0.1604
B6.A-Chr16 f 0.0 0.1727 0.3396 -0.3396
B6.A-Chr16 m 0.625 0.1727 0.9646 0.2854
B6.A-Chr17 f 0.125 0.1727 0.4646 -0.2146
B6.A-Chr17 m 0.0 0.1727 0.3396 -0.3396
B6.A-Chr18 f 0.125 0.1727 0.4646 -0.2146
B6.A-Chr18 m 0.5 0.1727 0.8396 0.1604
B6.A-Chr19 f 0.0 0.1727 0.3396 -0.3396
B6.A-Chr19 m 0.0 0.1727 0.3396 -0.3396
B6.A-Chr2 f 0.375 0.1727 0.7146 0.0354
B6.A-Chr2 m 0.5 0.1727 0.8396 0.1604
B6.A-Chr3 f 0.375 0.1727 0.7146 0.0354
B6.A-Chr3 m 0.0 0.1727 0.3396 -0.3396
B6.A-Chr4 f 0.0 0.1846 0.3631 -0.3631
B6.A-Chr4 m 0.0 0.1727 0.3396 -0.3396
B6.A-Chr5 f 0.0 0.1727 0.3396 -0.3396
B6.A-Chr5 m 0.0 0.1727 0.3396 -0.3396
B6.A-Chr6 f 0.125 0.1727 0.4646 -0.2146
B6.A-Chr6 m 0.0 0.1727 0.3396 -0.3396
B6.A-Chr7 f 0.0 0.1727 0.3396 -0.3396
B6.A-Chr7 m 0.0 0.1727 0.3396 -0.3396
B6.A-Chr8 f 0.25 0.1727 0.5896 -0.0896
B6.A-Chr8 m 0.5 0.1727 0.8396 0.1604
B6.A-Chr9 f 0.25 0.1727 0.5896 -0.0896
B6.A-Chr9 m 0.25 0.1727 0.5896 -0.0896
B6.A-ChrX f 0.0 0.1727 0.3396 -0.3396
B6.A-ChrX m 0.0 0.1727 0.3396 -0.3396
B6.A-ChrY f 0.0 0.1727 0.3396 -0.3396
B6.A-ChrY m 0.0 0.1727 0.3396 -0.3396
C57BL/6J f 0.0625 0.1221 0.3027 -0.1777
C57BL/6J m 0.0 0.1727 0.3396 -0.3396


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 0.1562 0.1057 0.3642 -0.0517
B6.A-Chr1 both 0.0 0.1221 0.2402 -0.2402
B6.A-Chr10 both 0.3125 0.1221 0.5527 0.0723
B6.A-Chr11 both 0.05 0.1158 0.2778 -0.1778
B6.A-Chr12 both 0.0 0.1221 0.2402 -0.2402
B6.A-Chr13 both 0.0 0.143 0.2813 -0.2813
B6.A-Chr14 both 0.0 0.1221 0.2402 -0.2402
B6.A-Chr15 both 0.5 0.1221 0.7402 0.2598
B6.A-Chr16 both 0.3125 0.1221 0.5527 0.0723
B6.A-Chr17 both 0.0625 0.1221 0.3027 -0.1777
B6.A-Chr18 both 0.3125 0.1221 0.5527 0.0723
B6.A-Chr19 both 0.0 0.1221 0.2402 -0.2402
B6.A-Chr2 both 0.4375 0.1221 0.6777 0.1973
B6.A-Chr3 both 0.1875 0.1221 0.4277 -0.0527
B6.A-Chr4 both 0.0 0.1264 0.2486 -0.2486
B6.A-Chr5 both 0.0 0.1221 0.2402 -0.2402
B6.A-Chr6 both 0.0625 0.1221 0.3027 -0.1777
B6.A-Chr7 both 0.0 0.1221 0.2402 -0.2402
B6.A-Chr8 both 0.375 0.1221 0.6152 0.1348
B6.A-Chr9 both 0.25 0.1221 0.4902 0.0098
B6.A-ChrX both 0.0 0.1221 0.2402 -0.2402
B6.A-ChrY both 0.0 0.1221 0.2402 -0.2402
C57BL/6J both 0.0312 0.1057 0.2392 -0.1767




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA