Phenotype measure:   Lake2   vocal

ID, description, units MPD:21739   vocal   assessment of vocalization during supine restraint (score 0-1)   [score]
Data set, strains Lake2   B6.A consomic w/par   23 strains     sex: both     age: 8wks
Procedure observation (SHIRPA)
Ontology mappings

  STRAIN COMPARISON PLOT
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Lake2 - assessment of vocalization during supine restraint (score 0-1)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means0.842   score 0.753   score
Median of the strain means1.00   score 0.875   score
SD of the strain means± 0.224 ± 0.291
Coefficient of variation (CV)0.266 0.386
Min–max range of strain means0.375   –   1.00   score 0   –   1.00   score
Mean sample size per strain8.3   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.2348 0.2348 2.0116 0.157
strain 22 21.2636 0.9665 8.281 < 0.0001
sex:strain 22 5.4384 0.2472 2.118 0.0027
Residuals 335 39.1 0.1167


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 0.375 0.5   16 0.125 1.33 -2.09
A/J m 0.0 0.0   8 0.0 0.0 -2.59
B6.A-Chr1 f 0.75 0.463   8 0.164 0.617 -0.41
B6.A-Chr1 m 0.875 0.354   8 0.125 0.404 0.42
B6.A-Chr10 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.7
B6.A-Chr10 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.85
B6.A-Chr11 f 0.75 0.463   8 0.164 0.617 -0.41
B6.A-Chr11 m 0.7 0.483   10 0.153 0.69 -0.18
B6.A-Chr12 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.7
B6.A-Chr12 m 0.5 0.535   8 0.189 1.07 -0.87
B6.A-Chr13 f 1.0 0.0   5 0.0 0.0 1.0, 1.0 0.7
B6.A-Chr13 m 1.0 0.0   7 0.0 0.0 1.0, 1.0 0.85
B6.A-Chr14 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.7
B6.A-Chr14 m 0.625 0.518   8 0.183 0.828 -0.44
B6.A-Chr15 f 0.875 0.354   8 0.125 0.404 0.15
B6.A-Chr15 m 0.875 0.354   8 0.125 0.404 0.42
B6.A-Chr16 f 0.875 0.354   8 0.125 0.404 0.15
B6.A-Chr16 m 0.625 0.518   8 0.183 0.828 -0.44
B6.A-Chr17 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.7
B6.A-Chr17 m 0.75 0.463   8 0.164 0.617 -0.01
B6.A-Chr18 f 0.625 0.518   8 0.183 0.828 -0.97
B6.A-Chr18 m 0.625 0.518   8 0.183 0.828 -0.44
B6.A-Chr19 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.7
B6.A-Chr19 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.85
B6.A-Chr2 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.7
B6.A-Chr2 m 0.875 0.354   8 0.125 0.404 0.42
B6.A-Chr3 f 0.375 0.518   8 0.183 1.38 -2.09
B6.A-Chr3 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.85
B6.A-Chr4 f 1.0 0.0   7 0.0 0.0 1.0, 1.0 0.7
B6.A-Chr4 m 0.5 0.535   8 0.189 1.07 -0.87
B6.A-Chr5 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.7
B6.A-Chr5 m 0.875 0.354   8 0.125 0.404 0.42
B6.A-Chr6 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.7
B6.A-Chr6 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.85
B6.A-Chr7 f 0.625 0.518   8 0.183 0.828 -0.97
B6.A-Chr7 m 0.75 0.463   8 0.164 0.617 -0.01
B6.A-Chr8 f 0.75 0.463   8 0.164 0.617 -0.41
B6.A-Chr8 m 0.75 0.463   8 0.164 0.617 -0.01
B6.A-Chr9 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.7
B6.A-Chr9 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.85
B6.A-ChrX f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.7
B6.A-ChrX m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.85
B6.A-ChrY f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.7
B6.A-ChrY m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.85
C57BL/6J f 0.375 0.5   16 0.125 1.33 -2.09
C57BL/6J m 0.0 0.0   8 0.0 0.0 -2.59


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 0.375 0.0854 0.543 0.207
A/J m 0.0 0.1208 0.2376 -0.2376
B6.A-Chr1 f 0.75 0.1208 0.9876 0.5124
B6.A-Chr1 m 0.875 0.1208 1.1126 0.6374
B6.A-Chr10 f 1.0 0.1208 1.2376 0.7624
B6.A-Chr10 m 1.0 0.1208 1.2376 0.7624
B6.A-Chr11 f 0.75 0.1208 0.9876 0.5124
B6.A-Chr11 m 0.7 0.108 0.9125 0.4875
B6.A-Chr12 f 1.0 0.1208 1.2376 0.7624
B6.A-Chr12 m 0.5 0.1208 0.7376 0.2624
B6.A-Chr13 f 1.0 0.1528 1.3005 0.6995
B6.A-Chr13 m 1.0 0.1291 1.254 0.746
B6.A-Chr14 f 1.0 0.1208 1.2376 0.7624
B6.A-Chr14 m 0.625 0.1208 0.8626 0.3874
B6.A-Chr15 f 0.875 0.1208 1.1126 0.6374
B6.A-Chr15 m 0.875 0.1208 1.1126 0.6374
B6.A-Chr16 f 0.875 0.1208 1.1126 0.6374
B6.A-Chr16 m 0.625 0.1208 0.8626 0.3874
B6.A-Chr17 f 1.0 0.1208 1.2376 0.7624
B6.A-Chr17 m 0.75 0.1208 0.9876 0.5124
B6.A-Chr18 f 0.625 0.1208 0.8626 0.3874
B6.A-Chr18 m 0.625 0.1208 0.8626 0.3874
B6.A-Chr19 f 1.0 0.1208 1.2376 0.7624
B6.A-Chr19 m 1.0 0.1208 1.2376 0.7624
B6.A-Chr2 f 1.0 0.1208 1.2376 0.7624
B6.A-Chr2 m 0.875 0.1208 1.1126 0.6374
B6.A-Chr3 f 0.375 0.1208 0.6126 0.1374
B6.A-Chr3 m 1.0 0.1208 1.2376 0.7624
B6.A-Chr4 f 1.0 0.1291 1.254 0.746
B6.A-Chr4 m 0.5 0.1208 0.7376 0.2624
B6.A-Chr5 f 1.0 0.1208 1.2376 0.7624
B6.A-Chr5 m 0.875 0.1208 1.1126 0.6374
B6.A-Chr6 f 1.0 0.1208 1.2376 0.7624
B6.A-Chr6 m 1.0 0.1208 1.2376 0.7624
B6.A-Chr7 f 0.625 0.1208 0.8626 0.3874
B6.A-Chr7 m 0.75 0.1208 0.9876 0.5124
B6.A-Chr8 f 0.75 0.1208 0.9876 0.5124
B6.A-Chr8 m 0.75 0.1208 0.9876 0.5124
B6.A-Chr9 f 1.0 0.1208 1.2376 0.7624
B6.A-Chr9 m 1.0 0.1208 1.2376 0.7624
B6.A-ChrX f 1.0 0.1208 1.2376 0.7624
B6.A-ChrX m 1.0 0.1208 1.2376 0.7624
B6.A-ChrY f 1.0 0.1208 1.2376 0.7624
B6.A-ChrY m 1.0 0.1208 1.2376 0.7624
C57BL/6J f 0.375 0.0854 0.543 0.207
C57BL/6J m 0.0 0.1208 0.2376 -0.2376


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 0.1875 0.074 0.333 0.042
B6.A-Chr1 both 0.8125 0.0854 0.9805 0.6445
B6.A-Chr10 both 1.0 0.0854 1.168 0.832
B6.A-Chr11 both 0.725 0.081 0.8844 0.5656
B6.A-Chr12 both 0.75 0.0854 0.918 0.582
B6.A-Chr13 both 1.0 0.1 1.1967 0.8033
B6.A-Chr14 both 0.8125 0.0854 0.9805 0.6445
B6.A-Chr15 both 0.875 0.0854 1.043 0.707
B6.A-Chr16 both 0.75 0.0854 0.918 0.582
B6.A-Chr17 both 0.875 0.0854 1.043 0.707
B6.A-Chr18 both 0.625 0.0854 0.793 0.457
B6.A-Chr19 both 1.0 0.0854 1.168 0.832
B6.A-Chr2 both 0.9375 0.0854 1.1055 0.7695
B6.A-Chr3 both 0.6875 0.0854 0.8555 0.5195
B6.A-Chr4 both 0.75 0.0884 0.9239 0.5761
B6.A-Chr5 both 0.9375 0.0854 1.1055 0.7695
B6.A-Chr6 both 1.0 0.0854 1.168 0.832
B6.A-Chr7 both 0.6875 0.0854 0.8555 0.5195
B6.A-Chr8 both 0.75 0.0854 0.918 0.582
B6.A-Chr9 both 1.0 0.0854 1.168 0.832
B6.A-ChrX both 1.0 0.0854 1.168 0.832
B6.A-ChrY both 1.0 0.0854 1.168 0.832
C57BL/6J both 0.1875 0.074 0.333 0.042




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA