Phenotype measure:   Lake2   cross_reflex

ID, description, units MPD:21735   cross_reflex   extension of opposite foot after toe pinch on horizontal wire-grid (score 0-1)   [score]
Data set, strains Lake2   B6.A consomic w/par   23 strains     sex: both     age: 8wks
Procedure observation (SHIRPA)
Ontology mappings

  STRAIN COMPARISON PLOT
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Lake2 - extension of opposite foot after toe pinch on horizontal wire-grid (score 0-1)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means1.01   score 0.884   score
Median of the strain means1.00   score 1.00   score
SD of the strain means± 0.156 ± 0.204
Coefficient of variation (CV)0.154 0.231
Min–max range of strain means0.750   –   1.50   score 0.125   –   1.00   score
Mean sample size per strain8.3   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 2.4191 2.4191 30.0943 < 0.0001
strain 22 2.6956 0.1225 1.5243 0.0633
sex:strain 22 11.5788 0.5263 6.5474 < 0.0001
Residuals 335 26.9286 0.0804


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 1.38 0.719   16 0.18 0.523 2.37
A/J m 0.125 0.354   8 0.125 2.83 -3.72
B6.A-Chr1 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.07
B6.A-Chr1 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.57
B6.A-Chr10 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.07
B6.A-Chr10 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.57
B6.A-Chr11 f 0.75 0.463   8 0.164 0.617 -1.68
B6.A-Chr11 m 1.0 0.0   10 0.0 0.0 1.0, 1.0 0.57
B6.A-Chr12 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.07
B6.A-Chr12 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.57
B6.A-Chr13 f 1.0 0.0   5 0.0 0.0 1.0, 1.0 -0.07
B6.A-Chr13 m 0.714 0.488   7 0.184 0.683 -0.84
B6.A-Chr14 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.07
B6.A-Chr14 m 0.875 0.354   8 0.125 0.404 -0.05
B6.A-Chr15 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.07
B6.A-Chr15 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.57
B6.A-Chr16 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.07
B6.A-Chr16 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.57
B6.A-Chr17 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.07
B6.A-Chr17 m 0.75 0.463   8 0.164 0.617 -0.66
B6.A-Chr18 f 0.875 0.354   8 0.125 0.404 -0.87
B6.A-Chr18 m 0.75 0.463   8 0.164 0.617 -0.66
B6.A-Chr19 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.07
B6.A-Chr19 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.57
B6.A-Chr2 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.07
B6.A-Chr2 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.57
B6.A-Chr3 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.07
B6.A-Chr3 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.57
B6.A-Chr4 f 1.0 0.0   7 0.0 0.0 1.0, 1.0 -0.07
B6.A-Chr4 m 0.75 0.463   8 0.164 0.617 -0.66
B6.A-Chr5 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.07
B6.A-Chr5 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.57
B6.A-Chr6 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.07
B6.A-Chr6 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.57
B6.A-Chr7 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.07
B6.A-Chr7 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.57
B6.A-Chr8 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.07
B6.A-Chr8 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.57
B6.A-Chr9 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.07
B6.A-Chr9 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.57
B6.A-ChrX f 0.75 0.463   8 0.164 0.617 -1.68
B6.A-ChrX m 0.875 0.354   8 0.125 0.404 -0.05
B6.A-ChrY f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.07
B6.A-ChrY m 0.875 0.354   8 0.125 0.404 -0.05
C57BL/6J f 1.5 0.516   16 0.129 0.344 1.0, 2.0 3.14
C57BL/6J m 0.625 0.518   8 0.183 0.828 -1.27


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 1.375 0.0709 1.5144 1.2356
A/J m 0.125 0.1002 0.3222 0.0
B6.A-Chr1 f 1.0 0.1002 1.1972 0.8028
B6.A-Chr1 m 1.0 0.1002 1.1972 0.8028
B6.A-Chr10 f 1.0 0.1002 1.1972 0.8028
B6.A-Chr10 m 1.0 0.1002 1.1972 0.8028
B6.A-Chr11 f 0.75 0.1002 0.9472 0.5528
B6.A-Chr11 m 1.0 0.0897 1.1764 0.8236
B6.A-Chr12 f 1.0 0.1002 1.1972 0.8028
B6.A-Chr12 m 1.0 0.1002 1.1972 0.8028
B6.A-Chr13 f 1.0 0.1268 1.2494 0.7506
B6.A-Chr13 m 0.7143 0.1072 0.9251 0.5035
B6.A-Chr14 f 1.0 0.1002 1.1972 0.8028
B6.A-Chr14 m 0.875 0.1002 1.0722 0.6778
B6.A-Chr15 f 1.0 0.1002 1.1972 0.8028
B6.A-Chr15 m 1.0 0.1002 1.1972 0.8028
B6.A-Chr16 f 1.0 0.1002 1.1972 0.8028
B6.A-Chr16 m 1.0 0.1002 1.1972 0.8028
B6.A-Chr17 f 1.0 0.1002 1.1972 0.8028
B6.A-Chr17 m 0.75 0.1002 0.9472 0.5528
B6.A-Chr18 f 0.875 0.1002 1.0722 0.6778
B6.A-Chr18 m 0.75 0.1002 0.9472 0.5528
B6.A-Chr19 f 1.0 0.1002 1.1972 0.8028
B6.A-Chr19 m 1.0 0.1002 1.1972 0.8028
B6.A-Chr2 f 1.0 0.1002 1.1972 0.8028
B6.A-Chr2 m 1.0 0.1002 1.1972 0.8028
B6.A-Chr3 f 1.0 0.1002 1.1972 0.8028
B6.A-Chr3 m 1.0 0.1002 1.1972 0.8028
B6.A-Chr4 f 1.0 0.1072 1.2108 0.7892
B6.A-Chr4 m 0.75 0.1002 0.9472 0.5528
B6.A-Chr5 f 1.0 0.1002 1.1972 0.8028
B6.A-Chr5 m 1.0 0.1002 1.1972 0.8028
B6.A-Chr6 f 1.0 0.1002 1.1972 0.8028
B6.A-Chr6 m 1.0 0.1002 1.1972 0.8028
B6.A-Chr7 f 1.0 0.1002 1.1972 0.8028
B6.A-Chr7 m 1.0 0.1002 1.1972 0.8028
B6.A-Chr8 f 1.0 0.1002 1.1972 0.8028
B6.A-Chr8 m 1.0 0.1002 1.1972 0.8028
B6.A-Chr9 f 1.0 0.1002 1.1972 0.8028
B6.A-Chr9 m 1.0 0.1002 1.1972 0.8028
B6.A-ChrX f 0.75 0.1002 0.9472 0.5528
B6.A-ChrX m 0.875 0.1002 1.0722 0.6778
B6.A-ChrY f 1.0 0.1002 1.1972 0.8028
B6.A-ChrY m 0.875 0.1002 1.0722 0.6778
C57BL/6J f 1.5 0.0709 1.6394 1.3606
C57BL/6J m 0.625 0.1002 0.8222 0.4278


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 0.75 0.0614 0.8707 0.6293
B6.A-Chr1 both 1.0 0.0709 1.1394 0.8606
B6.A-Chr10 both 1.0 0.0709 1.1394 0.8606
B6.A-Chr11 both 0.875 0.0672 1.0073 0.7427
B6.A-Chr12 both 1.0 0.0709 1.1394 0.8606
B6.A-Chr13 both 0.8571 0.083 1.0204 0.6939
B6.A-Chr14 both 0.9375 0.0709 1.0769 0.7981
B6.A-Chr15 both 1.0 0.0709 1.1394 0.8606
B6.A-Chr16 both 1.0 0.0709 1.1394 0.8606
B6.A-Chr17 both 0.875 0.0709 1.0144 0.7356
B6.A-Chr18 both 0.8125 0.0709 0.9519 0.6731
B6.A-Chr19 both 1.0 0.0709 1.1394 0.8606
B6.A-Chr2 both 1.0 0.0709 1.1394 0.8606
B6.A-Chr3 both 1.0 0.0709 1.1394 0.8606
B6.A-Chr4 both 0.875 0.0734 1.0193 0.7307
B6.A-Chr5 both 1.0 0.0709 1.1394 0.8606
B6.A-Chr6 both 1.0 0.0709 1.1394 0.8606
B6.A-Chr7 both 1.0 0.0709 1.1394 0.8606
B6.A-Chr8 both 1.0 0.0709 1.1394 0.8606
B6.A-Chr9 both 1.0 0.0709 1.1394 0.8606
B6.A-ChrX both 0.8125 0.0709 0.9519 0.6731
B6.A-ChrY both 0.9375 0.0709 1.0769 0.7981
C57BL/6J both 1.0625 0.0614 1.1832 0.9418




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA