Phenotype measure:   Lake2   visual_placing

ID, description, units MPD:21731   visual_placing   forelimb extension towards horizontal wire-grid when lowered by tail (score 0-3)   [score]
Data set, strains Lake2   B6.A consomic w/par   23 strains     sex: both     age: 8wks
Procedure observation (SHIRPA)
Ontology mappings

  STRAIN COMPARISON PLOT
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Lake2 - forelimb extension towards horizontal wire-grid when lowered by tail (score 0-3)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means2.02   score 2.01   score
Median of the strain means2.00   score 2.00   score
SD of the strain means± 0.0606 ± 0.0346
Coefficient of variation (CV)0.0300 0.0172
Min–max range of strain means2.00   –   2.27   score 2.00   –   2.12   score
Mean sample size per strain8.3   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0378 0.0378 1.9633 0.1621
strain 22 0.793 0.036 1.8715 0.0109
sex:strain 22 0.5674 0.0258 1.339 0.143
Residuals 334 6.4333 0.0193


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 2.27 0.458   15 0.118 0.202 2.0, 3.0 4.18
A/J m 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.3
B6.A-Chr1 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.28
B6.A-Chr1 m 2.12 0.354   8 0.125 0.166 2.0, 3.0 3.17
B6.A-Chr10 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.28
B6.A-Chr10 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.3
B6.A-Chr11 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.28
B6.A-Chr11 m 2.0 0.0   10 0.0 0.0 2.0, 2.0 -0.3
B6.A-Chr12 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.28
B6.A-Chr12 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.3
B6.A-Chr13 f 2.0 0.0   5 0.0 0.0 2.0, 2.0 -0.28
B6.A-Chr13 m 2.0 0.0   7 0.0 0.0 2.0, 2.0 -0.3
B6.A-Chr14 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.28
B6.A-Chr14 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.3
B6.A-Chr15 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.28
B6.A-Chr15 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.3
B6.A-Chr16 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.28
B6.A-Chr16 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.3
B6.A-Chr17 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.28
B6.A-Chr17 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.3
B6.A-Chr18 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.28
B6.A-Chr18 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.3
B6.A-Chr19 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.28
B6.A-Chr19 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.3
B6.A-Chr2 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.28
B6.A-Chr2 m 2.12 0.354   8 0.125 0.166 2.0, 3.0 3.17
B6.A-Chr3 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.28
B6.A-Chr3 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.3
B6.A-Chr4 f 2.0 0.0   7 0.0 0.0 2.0, 2.0 -0.28
B6.A-Chr4 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.3
B6.A-Chr5 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.28
B6.A-Chr5 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.3
B6.A-Chr6 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.28
B6.A-Chr6 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.3
B6.A-Chr7 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.28
B6.A-Chr7 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.3
B6.A-Chr8 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.28
B6.A-Chr8 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.3
B6.A-Chr9 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.28
B6.A-Chr9 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.3
B6.A-ChrX f 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.28
B6.A-ChrX m 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.3
B6.A-ChrY f 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.28
B6.A-ChrY m 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.3
C57BL/6J f 2.12 0.342   16 0.0854 0.161 2.0, 3.0 1.7
C57BL/6J m 2.0 0.0   8 0.0 0.0 2.0, 2.0 -0.3


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 2.2667 0.0358 2.3372 2.1962
A/J m 2.0 0.0491 2.0965 1.9035
B6.A-Chr1 f 2.0 0.0491 2.0965 1.9035
B6.A-Chr1 m 2.125 0.0491 2.2215 2.0285
B6.A-Chr10 f 2.0 0.0491 2.0965 1.9035
B6.A-Chr10 m 2.0 0.0491 2.0965 1.9035
B6.A-Chr11 f 2.0 0.0491 2.0965 1.9035
B6.A-Chr11 m 2.0 0.0439 2.0863 1.9137
B6.A-Chr12 f 2.0 0.0491 2.0965 1.9035
B6.A-Chr12 m 2.0 0.0491 2.0965 1.9035
B6.A-Chr13 f 2.0 0.0621 2.1221 1.8779
B6.A-Chr13 m 2.0 0.0525 2.1032 1.8968
B6.A-Chr14 f 2.0 0.0491 2.0965 1.9035
B6.A-Chr14 m 2.0 0.0491 2.0965 1.9035
B6.A-Chr15 f 2.0 0.0491 2.0965 1.9035
B6.A-Chr15 m 2.0 0.0491 2.0965 1.9035
B6.A-Chr16 f 2.0 0.0491 2.0965 1.9035
B6.A-Chr16 m 2.0 0.0491 2.0965 1.9035
B6.A-Chr17 f 2.0 0.0491 2.0965 1.9035
B6.A-Chr17 m 2.0 0.0491 2.0965 1.9035
B6.A-Chr18 f 2.0 0.0491 2.0965 1.9035
B6.A-Chr18 m 2.0 0.0491 2.0965 1.9035
B6.A-Chr19 f 2.0 0.0491 2.0965 1.9035
B6.A-Chr19 m 2.0 0.0491 2.0965 1.9035
B6.A-Chr2 f 2.0 0.0491 2.0965 1.9035
B6.A-Chr2 m 2.125 0.0491 2.2215 2.0285
B6.A-Chr3 f 2.0 0.0491 2.0965 1.9035
B6.A-Chr3 m 2.0 0.0491 2.0965 1.9035
B6.A-Chr4 f 2.0 0.0525 2.1032 1.8968
B6.A-Chr4 m 2.0 0.0491 2.0965 1.9035
B6.A-Chr5 f 2.0 0.0491 2.0965 1.9035
B6.A-Chr5 m 2.0 0.0491 2.0965 1.9035
B6.A-Chr6 f 2.0 0.0491 2.0965 1.9035
B6.A-Chr6 m 2.0 0.0491 2.0965 1.9035
B6.A-Chr7 f 2.0 0.0491 2.0965 1.9035
B6.A-Chr7 m 2.0 0.0491 2.0965 1.9035
B6.A-Chr8 f 2.0 0.0491 2.0965 1.9035
B6.A-Chr8 m 2.0 0.0491 2.0965 1.9035
B6.A-Chr9 f 2.0 0.0491 2.0965 1.9035
B6.A-Chr9 m 2.0 0.0491 2.0965 1.9035
B6.A-ChrX f 2.0 0.0491 2.0965 1.9035
B6.A-ChrX m 2.0 0.0491 2.0965 1.9035
B6.A-ChrY f 2.0 0.0491 2.0965 1.9035
B6.A-ChrY m 2.0 0.0491 2.0965 1.9035
C57BL/6J f 2.125 0.0347 2.1933 2.0567
C57BL/6J m 2.0 0.0491 2.0965 1.9035


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 2.1333 0.0304 2.1931 2.0736
B6.A-Chr1 both 2.0625 0.0347 2.1308 1.9942
B6.A-Chr10 both 2.0 0.0347 2.0683 1.9317
B6.A-Chr11 both 2.0 0.0329 2.0647 1.9353
B6.A-Chr12 both 2.0 0.0347 2.0683 1.9317
B6.A-Chr13 both 2.0 0.0406 2.0799 1.9201
B6.A-Chr14 both 2.0 0.0347 2.0683 1.9317
B6.A-Chr15 both 2.0 0.0347 2.0683 1.9317
B6.A-Chr16 both 2.0 0.0347 2.0683 1.9317
B6.A-Chr17 both 2.0 0.0347 2.0683 1.9317
B6.A-Chr18 both 2.0 0.0347 2.0683 1.9317
B6.A-Chr19 both 2.0 0.0347 2.0683 1.9317
B6.A-Chr2 both 2.0625 0.0347 2.1308 1.9942
B6.A-Chr3 both 2.0 0.0347 2.0683 1.9317
B6.A-Chr4 both 2.0 0.0359 2.0706 1.9294
B6.A-Chr5 both 2.0 0.0347 2.0683 1.9317
B6.A-Chr6 both 2.0 0.0347 2.0683 1.9317
B6.A-Chr7 both 2.0 0.0347 2.0683 1.9317
B6.A-Chr8 both 2.0 0.0347 2.0683 1.9317
B6.A-Chr9 both 2.0 0.0347 2.0683 1.9317
B6.A-ChrX both 2.0 0.0347 2.0683 1.9317
B6.A-ChrY both 2.0 0.0347 2.0683 1.9317
C57BL/6J both 2.0625 0.03 2.1216 2.0034




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA