Phenotype measure:   Lake2   touch_escape

ID, description, units MPD:21730   touch_escape   touch provoked withdrawal (escape) reflex in arena (score 0-3)   [score]
Data set, strains Lake2   B6.A consomic w/par   23 strains     sex: both     age: 8wks
Procedure observation (SHIRPA)
Ontology mappings

  STRAIN COMPARISON PLOT
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Lake2 - touch provoked withdrawal (escape) reflex in arena (score 0-3)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means1.45   score 1.42   score
Median of the strain means1.38   score 1.40   score
SD of the strain means± 0.328 ± 0.467
Coefficient of variation (CV)0.226 0.329
Min–max range of strain means1.00   –   2.00   score 0   –   2.00   score
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.1575 0.1575 0.6713 0.4132
strain 22 27.8607 1.2664 5.3964 < 0.0001
sex:strain 22 31.1239 1.4147 6.0285 < 0.0001
Residuals 336 78.85 0.2347


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 1.12 0.719   16 0.18 0.639 -1.01
A/J m 0.0 0.0   8 0.0 0.0 -3.04
B6.A-Chr1 f 1.75 0.463   8 0.164 0.265 1.0, 2.0 0.91
B6.A-Chr1 m 1.5 0.535   8 0.189 0.356 1.0, 2.0 0.17
B6.A-Chr10 f 1.12 0.354   8 0.125 0.314 1.0, 2.0 -1.01
B6.A-Chr10 m 1.25 0.463   8 0.164 0.37 1.0, 2.0 -0.36
B6.A-Chr11 f 1.12 0.354   8 0.125 0.314 1.0, 2.0 -1.01
B6.A-Chr11 m 1.4 0.516   10 0.163 0.369 1.0, 2.0 -0.04
B6.A-Chr12 f 1.88 0.354   8 0.125 0.189 1.0, 2.0 1.31
B6.A-Chr12 m 1.88 0.354   8 0.125 0.189 1.0, 2.0 0.98
B6.A-Chr13 f 1.4 0.548   5 0.245 0.391 1.0, 2.0 -0.16
B6.A-Chr13 m 2.0 0.577   7 0.218 0.289 1.0, 3.0 1.24
B6.A-Chr14 f 1.12 0.354   8 0.125 0.314 1.0, 2.0 -1.01
B6.A-Chr14 m 1.38 0.518   8 0.183 0.376 1.0, 2.0 -0.09
B6.A-Chr15 f 1.12 0.354   8 0.125 0.314 1.0, 2.0 -1.01
B6.A-Chr15 m 1.25 0.463   8 0.164 0.37 1.0, 2.0 -0.36
B6.A-Chr16 f 1.62 1.06   8 0.375 0.653 0.51
B6.A-Chr16 m 1.0 0.926   8 0.327 0.926 -0.9
B6.A-Chr17 f 1.25 0.463   8 0.164 0.37 1.0, 2.0 -0.62
B6.A-Chr17 m 1.25 0.463   8 0.164 0.37 1.0, 2.0 -0.36
B6.A-Chr18 f 1.12 0.354   8 0.125 0.314 1.0, 2.0 -1.01
B6.A-Chr18 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 1.24
B6.A-Chr19 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 1.67
B6.A-Chr19 m 1.38 0.518   8 0.183 0.376 1.0, 2.0 -0.09
B6.A-Chr2 f 1.75 0.707   8 0.25 0.404 1.0, 3.0 0.91
B6.A-Chr2 m 1.25 0.463   8 0.164 0.37 1.0, 2.0 -0.36
B6.A-Chr3 f 1.88 0.641   8 0.227 0.342 1.0, 3.0 1.31
B6.A-Chr3 m 1.5 0.535   8 0.189 0.356 1.0, 2.0 0.17
B6.A-Chr4 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 1.67
B6.A-Chr4 m 1.0 0.535   8 0.189 0.535 -0.9
B6.A-Chr5 f 1.5 0.535   8 0.189 0.356 1.0, 2.0 0.15
B6.A-Chr5 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 1.24
B6.A-Chr6 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -1.38
B6.A-Chr6 m 1.5 0.535   8 0.189 0.356 1.0, 2.0 0.17
B6.A-Chr7 f 1.25 0.463   8 0.164 0.37 1.0, 2.0 -0.62
B6.A-Chr7 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 1.24
B6.A-Chr8 f 1.25 0.463   8 0.164 0.37 1.0, 2.0 -0.62
B6.A-Chr8 m 1.62 0.518   8 0.183 0.318 1.0, 2.0 0.43
B6.A-Chr9 f 1.38 0.518   8 0.183 0.376 1.0, 2.0 -0.22
B6.A-Chr9 m 2.0 0.0   8 0.0 0.0 2.0, 2.0 1.24
B6.A-ChrX f 1.38 0.744   8 0.263 0.541 1.0, 3.0 -0.22
B6.A-ChrX m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.9
B6.A-ChrY f 1.5 0.535   8 0.189 0.356 1.0, 2.0 0.15
B6.A-ChrY m 1.5 0.535   8 0.189 0.356 1.0, 2.0 0.17
C57BL/6J f 1.88 0.342   16 0.0854 0.182 1.0, 2.0 1.31
C57BL/6J m 1.0 0.0   8 0.0 0.0 1.0, 1.0 -0.9


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 1.125 0.1211 1.3632 0.8868
A/J m 0.0 0.1713 0.3369 -0.3369
B6.A-Chr1 f 1.75 0.1713 2.0869 1.4131
B6.A-Chr1 m 1.5 0.1713 1.8369 1.1631
B6.A-Chr10 f 1.125 0.1713 1.4619 0.7881
B6.A-Chr10 m 1.25 0.1713 1.5869 0.9131
B6.A-Chr11 f 1.125 0.1713 1.4619 0.7881
B6.A-Chr11 m 1.4 0.1532 1.7013 1.0987
B6.A-Chr12 f 1.875 0.1713 2.2119 1.5381
B6.A-Chr12 m 1.875 0.1713 2.2119 1.5381
B6.A-Chr13 f 1.4 0.2166 1.8261 0.9739
B6.A-Chr13 m 2.0 0.1831 2.3602 1.6398
B6.A-Chr14 f 1.125 0.1713 1.4619 0.7881
B6.A-Chr14 m 1.375 0.1713 1.7119 1.0381
B6.A-Chr15 f 1.125 0.1713 1.4619 0.7881
B6.A-Chr15 m 1.25 0.1713 1.5869 0.9131
B6.A-Chr16 f 1.625 0.1713 1.9619 1.2881
B6.A-Chr16 m 1.0 0.1713 1.3369 0.6631
B6.A-Chr17 f 1.25 0.1713 1.5869 0.9131
B6.A-Chr17 m 1.25 0.1713 1.5869 0.9131
B6.A-Chr18 f 1.125 0.1713 1.4619 0.7881
B6.A-Chr18 m 2.0 0.1713 2.3369 1.6631
B6.A-Chr19 f 2.0 0.1713 2.3369 1.6631
B6.A-Chr19 m 1.375 0.1713 1.7119 1.0381
B6.A-Chr2 f 1.75 0.1713 2.0869 1.4131
B6.A-Chr2 m 1.25 0.1713 1.5869 0.9131
B6.A-Chr3 f 1.875 0.1713 2.2119 1.5381
B6.A-Chr3 m 1.5 0.1713 1.8369 1.1631
B6.A-Chr4 f 2.0 0.1713 2.3369 1.6631
B6.A-Chr4 m 1.0 0.1713 1.3369 0.6631
B6.A-Chr5 f 1.5 0.1713 1.8369 1.1631
B6.A-Chr5 m 2.0 0.1713 2.3369 1.6631
B6.A-Chr6 f 1.0 0.1713 1.3369 0.6631
B6.A-Chr6 m 1.5 0.1713 1.8369 1.1631
B6.A-Chr7 f 1.25 0.1713 1.5869 0.9131
B6.A-Chr7 m 2.0 0.1713 2.3369 1.6631
B6.A-Chr8 f 1.25 0.1713 1.5869 0.9131
B6.A-Chr8 m 1.625 0.1713 1.9619 1.2881
B6.A-Chr9 f 1.375 0.1713 1.7119 1.0381
B6.A-Chr9 m 2.0 0.1713 2.3369 1.6631
B6.A-ChrX f 1.375 0.1713 1.7119 1.0381
B6.A-ChrX m 1.0 0.1713 1.3369 0.6631
B6.A-ChrY f 1.5 0.1713 1.8369 1.1631
B6.A-ChrY m 1.5 0.1713 1.8369 1.1631
C57BL/6J f 1.875 0.1211 2.1132 1.6368
C57BL/6J m 1.0 0.1713 1.3369 0.6631


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 0.5625 0.1049 0.7688 0.3562
B6.A-Chr1 both 1.625 0.1211 1.8632 1.3868
B6.A-Chr10 both 1.1875 0.1211 1.4257 0.9493
B6.A-Chr11 both 1.2625 0.1149 1.4885 1.0365
B6.A-Chr12 both 1.875 0.1211 2.1132 1.6368
B6.A-Chr13 both 1.7 0.1418 1.979 1.421
B6.A-Chr14 both 1.25 0.1211 1.4882 1.0118
B6.A-Chr15 both 1.1875 0.1211 1.4257 0.9493
B6.A-Chr16 both 1.3125 0.1211 1.5507 1.0743
B6.A-Chr17 both 1.25 0.1211 1.4882 1.0118
B6.A-Chr18 both 1.5625 0.1211 1.8007 1.3243
B6.A-Chr19 both 1.6875 0.1211 1.9257 1.4493
B6.A-Chr2 both 1.5 0.1211 1.7382 1.2618
B6.A-Chr3 both 1.6875 0.1211 1.9257 1.4493
B6.A-Chr4 both 1.5 0.1211 1.7382 1.2618
B6.A-Chr5 both 1.75 0.1211 1.9882 1.5118
B6.A-Chr6 both 1.25 0.1211 1.4882 1.0118
B6.A-Chr7 both 1.625 0.1211 1.8632 1.3868
B6.A-Chr8 both 1.4375 0.1211 1.6757 1.1993
B6.A-Chr9 both 1.6875 0.1211 1.9257 1.4493
B6.A-ChrX both 1.1875 0.1211 1.4257 0.9493
B6.A-ChrY both 1.5 0.1211 1.7382 1.2618
C57BL/6J both 1.4375 0.1049 1.6438 1.2312




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA