Project measure / variable:   Lake2   salivation

ID, description, units MPD:21729   salivation   salivation response when provoked with probe between teeth during supine restraint (score 0-2)   [score]  
Data set, strains Lake2   B6.A consomic w/par   23 strains     sex: both     age: 8wks
Procedure observation (SHIRPA)
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  STRAIN COMPARISON PLOT
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Lake2 - salivation response when provoked with probe between teeth during supine restraint (score 0-2)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means0.889   score 0.852   score
Median of the strain means1.00   score 1.00   score
SD of the strain means± 0.241 ± 0.213
Coefficient of variation (CV)0.272 0.250
Min–max range of strain means0   –   1.00   score 0.500   –   1.00   score
Mean sample size per strain8.3   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.11 0.11 1.455 0.2286
strain 22 13.8786 0.6308 8.3407 < 0.0001
sex:strain 22 4.8471 0.2203 2.913 < 0.0001
Residuals 335 25.3375 0.0756


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 0.688 0.479   16 0.12 0.696 -0.83
A/J m 0.625 0.518   8 0.183 0.828 -1.06
B6.A-Chr1 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.46
B6.A-Chr1 m 0.5 0.535   8 0.189 1.07 -1.65
B6.A-Chr10 f 0.5 0.535   8 0.189 1.07 -1.61
B6.A-Chr10 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.69
B6.A-Chr11 f 0.875 0.354   8 0.125 0.404 -0.06
B6.A-Chr11 m 0.6 0.516   10 0.163 0.861 -1.18
B6.A-Chr12 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.46
B6.A-Chr12 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.69
B6.A-Chr13 f 1.0 0.0   5 0.0 0.0 1.0, 1.0 0.46
B6.A-Chr13 m 1.0 0.0   7 0.0 0.0 1.0, 1.0 0.69
B6.A-Chr14 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.46
B6.A-Chr14 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.69
B6.A-Chr15 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.46
B6.A-Chr15 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.69
B6.A-Chr16 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.46
B6.A-Chr16 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.69
B6.A-Chr17 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.46
B6.A-Chr17 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.69
B6.A-Chr18 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.46
B6.A-Chr18 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.69
B6.A-Chr19 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.46
B6.A-Chr19 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.69
B6.A-Chr2 f 0.625 0.518   8 0.183 0.828 -1.09
B6.A-Chr2 m 0.5 0.535   8 0.189 1.07 -1.65
B6.A-Chr3 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.46
B6.A-Chr3 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.69
B6.A-Chr4 f 1.0 0.0   7 0.0 0.0 1.0, 1.0 0.46
B6.A-Chr4 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.69
B6.A-Chr5 f 0.0 0.0   8 0.0 0.0 -3.68
B6.A-Chr5 m 0.5 0.535   8 0.189 1.07 -1.65
B6.A-Chr6 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.46
B6.A-Chr6 m 0.5 0.535   8 0.189 1.07 -1.65
B6.A-Chr7 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.46
B6.A-Chr7 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.69
B6.A-Chr8 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.46
B6.A-Chr8 m 0.625 0.518   8 0.183 0.828 -1.06
B6.A-Chr9 f 0.75 0.463   8 0.164 0.617 -0.57
B6.A-Chr9 m 0.75 0.463   8 0.164 0.617 -0.48
B6.A-ChrX f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.46
B6.A-ChrX m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.69
B6.A-ChrY f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.46
B6.A-ChrY m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.69
C57BL/6J f 1.0 0.0   16 0.0 0.0 1.0, 1.0 0.46
C57BL/6J m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.69


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 0.6875 0.0688 0.8227 0.5523
A/J m 0.625 0.0972 0.8163 0.4337
B6.A-Chr1 f 1.0 0.0972 1.1913 0.8087
B6.A-Chr1 m 0.5 0.0972 0.6913 0.3087
B6.A-Chr10 f 0.5 0.0972 0.6913 0.3087
B6.A-Chr10 m 1.0 0.0972 1.1913 0.8087
B6.A-Chr11 f 0.875 0.0972 1.0663 0.6837
B6.A-Chr11 m 0.6 0.087 0.7711 0.4289
B6.A-Chr12 f 1.0 0.0972 1.1913 0.8087
B6.A-Chr12 m 1.0 0.0972 1.1913 0.8087
B6.A-Chr13 f 1.0 0.123 1.2419 0.7581
B6.A-Chr13 m 1.0 0.1039 1.2045 0.7955
B6.A-Chr14 f 1.0 0.0972 1.1913 0.8087
B6.A-Chr14 m 1.0 0.0972 1.1913 0.8087
B6.A-Chr15 f 1.0 0.0972 1.1913 0.8087
B6.A-Chr15 m 1.0 0.0972 1.1913 0.8087
B6.A-Chr16 f 1.0 0.0972 1.1913 0.8087
B6.A-Chr16 m 1.0 0.0972 1.1913 0.8087
B6.A-Chr17 f 1.0 0.0972 1.1913 0.8087
B6.A-Chr17 m 1.0 0.0972 1.1913 0.8087
B6.A-Chr18 f 1.0 0.0972 1.1913 0.8087
B6.A-Chr18 m 1.0 0.0972 1.1913 0.8087
B6.A-Chr19 f 1.0 0.0972 1.1913 0.8087
B6.A-Chr19 m 1.0 0.0972 1.1913 0.8087
B6.A-Chr2 f 0.625 0.0972 0.8163 0.4337
B6.A-Chr2 m 0.5 0.0972 0.6913 0.3087
B6.A-Chr3 f 1.0 0.0972 1.1913 0.8087
B6.A-Chr3 m 1.0 0.0972 1.1913 0.8087
B6.A-Chr4 f 1.0 0.1039 1.2045 0.7955
B6.A-Chr4 m 1.0 0.0972 1.1913 0.8087
B6.A-Chr5 f 0.0 0.0972 0.1913 -0.1913
B6.A-Chr5 m 0.5 0.0972 0.6913 0.3087
B6.A-Chr6 f 1.0 0.0972 1.1913 0.8087
B6.A-Chr6 m 0.5 0.0972 0.6913 0.3087
B6.A-Chr7 f 1.0 0.0972 1.1913 0.8087
B6.A-Chr7 m 1.0 0.0972 1.1913 0.8087
B6.A-Chr8 f 1.0 0.0972 1.1913 0.8087
B6.A-Chr8 m 0.625 0.0972 0.8163 0.4337
B6.A-Chr9 f 0.75 0.0972 0.9413 0.5587
B6.A-Chr9 m 0.75 0.0972 0.9413 0.5587
B6.A-ChrX f 1.0 0.0972 1.1913 0.8087
B6.A-ChrX m 1.0 0.0972 1.1913 0.8087
B6.A-ChrY f 1.0 0.0972 1.1913 0.8087
B6.A-ChrY m 1.0 0.0972 1.1913 0.8087
C57BL/6J f 1.0 0.0688 1.1352 0.8648
C57BL/6J m 1.0 0.0972 1.1913 0.8087


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 0.6562 0.0595 0.7734 0.5391
B6.A-Chr1 both 0.75 0.0688 0.8852 0.6148
B6.A-Chr10 both 0.75 0.0688 0.8852 0.6148
B6.A-Chr11 both 0.7375 0.0652 0.8658 0.6092
B6.A-Chr12 both 1.0 0.0688 1.1352 0.8648
B6.A-Chr13 both 1.0 0.0805 1.1584 0.8416
B6.A-Chr14 both 1.0 0.0688 1.1352 0.8648
B6.A-Chr15 both 1.0 0.0688 1.1352 0.8648
B6.A-Chr16 both 1.0 0.0688 1.1352 0.8648
B6.A-Chr17 both 1.0 0.0688 1.1352 0.8648
B6.A-Chr18 both 1.0 0.0688 1.1352 0.8648
B6.A-Chr19 both 1.0 0.0688 1.1352 0.8648
B6.A-Chr2 both 0.5625 0.0688 0.6977 0.4273
B6.A-Chr3 both 1.0 0.0688 1.1352 0.8648
B6.A-Chr4 both 1.0 0.0712 1.14 0.86
B6.A-Chr5 both 0.25 0.0688 0.3852 0.1148
B6.A-Chr6 both 0.75 0.0688 0.8852 0.6148
B6.A-Chr7 both 1.0 0.0688 1.1352 0.8648
B6.A-Chr8 both 0.8125 0.0688 0.9477 0.6773
B6.A-Chr9 both 0.75 0.0688 0.8852 0.6148
B6.A-ChrX both 1.0 0.0688 1.1352 0.8648
B6.A-ChrY both 1.0 0.0688 1.1352 0.8648
C57BL/6J both 1.0 0.0595 1.1171 0.8829




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA