Phenotype measure:   Lake2   startle_response

ID, description, units MPD:21725   startle_response   response to airpuff from behind in arena (score 0-4)   [score]
Data set, strains Lake2   B6.A consomic w/par   23 strains     sex: both     age: 8wks
Procedure observation (SHIRPA)
Ontology mappings

  STRAIN COMPARISON PLOT
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Lake2 - response to airpuff from behind in arena (score 0-4)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means1.66   score 1.60   score
Median of the strain means1.60   score 1.62   score
SD of the strain means± 0.432 ± 0.318
Coefficient of variation (CV)0.261 0.199
Min–max range of strain means1.00   –   2.50   score 1.12   –   2.30   score
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.6885 0.6885 2.112 0.1471
strain 22 34.52 1.5691 4.8133 < 0.0001
sex:strain 22 20.2541 0.9206 2.8242 < 0.0001
Residuals 336 109.5321 0.326


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 1.81 0.544   16 0.136 0.3 1.0, 3.0 0.36
A/J m 1.25 0.463   8 0.164 0.37 1.0, 2.0 -1.1
B6.A-Chr1 f 2.0 0.0   8 0.0 0.0 2.0, 2.0 0.79
B6.A-Chr1 m 1.38 0.518   8 0.183 0.376 1.0, 2.0 -0.69
B6.A-Chr10 f 1.38 0.518   8 0.183 0.376 1.0, 2.0 -0.64
B6.A-Chr10 m 1.5 0.535   8 0.189 0.356 1.0, 2.0 -0.31
B6.A-Chr11 f 1.25 0.707   8 0.25 0.566 -0.94
B6.A-Chr11 m 2.3 0.483   10 0.153 0.21 2.0, 3.0 2.2
B6.A-Chr12 f 1.38 0.518   8 0.183 0.376 1.0, 2.0 -0.64
B6.A-Chr12 m 1.12 0.354   8 0.125 0.314 1.0, 2.0 -1.51
B6.A-Chr13 f 1.6 0.894   5 0.4 0.559 1.0, 3.0 -0.13
B6.A-Chr13 m 1.86 0.378   7 0.143 0.204 1.0, 2.0 0.82
B6.A-Chr14 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 -1.52
B6.A-Chr14 m 1.38 0.518   8 0.183 0.376 1.0, 2.0 -0.69
B6.A-Chr15 f 1.25 0.463   8 0.164 0.37 1.0, 2.0 -0.94
B6.A-Chr15 m 1.12 0.354   8 0.125 0.314 1.0, 2.0 -1.51
B6.A-Chr16 f 1.62 0.744   8 0.263 0.458 1.0, 3.0 -0.08
B6.A-Chr16 m 1.62 0.518   8 0.183 0.318 1.0, 2.0 0.06
B6.A-Chr17 f 1.12 0.354   8 0.125 0.314 1.0, 2.0 -1.24
B6.A-Chr17 m 1.38 0.518   8 0.183 0.376 1.0, 2.0 -0.69
B6.A-Chr18 f 1.12 0.354   8 0.125 0.314 1.0, 2.0 -1.24
B6.A-Chr18 m 1.5 0.535   8 0.189 0.356 1.0, 2.0 -0.31
B6.A-Chr19 f 1.38 0.518   8 0.183 0.376 1.0, 2.0 -0.64
B6.A-Chr19 m 1.12 0.354   8 0.125 0.314 1.0, 2.0 -1.51
B6.A-Chr2 f 2.38 0.518   8 0.183 0.218 2.0, 3.0 1.67
B6.A-Chr2 m 1.75 0.707   8 0.25 0.404 1.0, 3.0 0.47
B6.A-Chr3 f 2.0 0.756   8 0.267 0.378 1.0, 3.0 0.79
B6.A-Chr3 m 1.88 0.835   8 0.295 0.445 1.0, 3.0 0.88
B6.A-Chr4 f 2.38 0.518   8 0.183 0.218 2.0, 3.0 1.67
B6.A-Chr4 m 1.62 0.744   8 0.263 0.458 1.0, 3.0 0.06
B6.A-Chr5 f 2.5 0.535   8 0.189 0.214 2.0, 3.0 1.95
B6.A-Chr5 m 1.88 0.641   8 0.227 0.342 1.0, 3.0 0.88
B6.A-Chr6 f 1.5 0.535   8 0.189 0.356 1.0, 2.0 -0.36
B6.A-Chr6 m 1.5 0.535   8 0.189 0.356 1.0, 2.0 -0.31
B6.A-Chr7 f 1.62 0.518   8 0.183 0.318 1.0, 2.0 -0.08
B6.A-Chr7 m 2.12 0.641   8 0.227 0.302 1.0, 3.0 1.64
B6.A-Chr8 f 1.5 0.756   8 0.267 0.504 1.0, 3.0 -0.36
B6.A-Chr8 m 1.75 0.707   8 0.25 0.404 1.0, 3.0 0.47
B6.A-Chr9 f 1.5 0.756   8 0.267 0.504 1.0, 3.0 -0.36
B6.A-Chr9 m 1.88 0.354   8 0.125 0.189 1.0, 2.0 0.88
B6.A-ChrX f 1.75 0.886   8 0.313 0.507 1.0, 3.0 0.22
B6.A-ChrX m 1.88 0.641   8 0.227 0.342 1.0, 3.0 0.88
B6.A-ChrY f 1.75 0.463   8 0.164 0.265 1.0, 2.0 0.22
B6.A-ChrY m 1.38 0.744   8 0.263 0.541 1.0, 3.0 -0.69
C57BL/6J f 2.31 0.602   16 0.151 0.26 1.0, 3.0 1.51
C57BL/6J m 1.62 0.518   8 0.183 0.318 1.0, 2.0 0.06


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 1.8125 0.1427 2.0933 1.5317
A/J m 1.25 0.2019 1.6471 0.8529
B6.A-Chr1 f 2.0 0.2019 2.3971 1.6029
B6.A-Chr1 m 1.375 0.2019 1.7721 0.9779
B6.A-Chr10 f 1.375 0.2019 1.7721 0.9779
B6.A-Chr10 m 1.5 0.2019 1.8971 1.1029
B6.A-Chr11 f 1.25 0.2019 1.6471 0.8529
B6.A-Chr11 m 2.3 0.1806 2.6552 1.9448
B6.A-Chr12 f 1.375 0.2019 1.7721 0.9779
B6.A-Chr12 m 1.125 0.2019 1.5221 0.7279
B6.A-Chr13 f 1.6 0.2553 2.1023 1.0977
B6.A-Chr13 m 1.8571 0.2158 2.2816 1.4327
B6.A-Chr14 f 1.0 0.2019 1.3971 0.6029
B6.A-Chr14 m 1.375 0.2019 1.7721 0.9779
B6.A-Chr15 f 1.25 0.2019 1.6471 0.8529
B6.A-Chr15 m 1.125 0.2019 1.5221 0.7279
B6.A-Chr16 f 1.625 0.2019 2.0221 1.2279
B6.A-Chr16 m 1.625 0.2019 2.0221 1.2279
B6.A-Chr17 f 1.125 0.2019 1.5221 0.7279
B6.A-Chr17 m 1.375 0.2019 1.7721 0.9779
B6.A-Chr18 f 1.125 0.2019 1.5221 0.7279
B6.A-Chr18 m 1.5 0.2019 1.8971 1.1029
B6.A-Chr19 f 1.375 0.2019 1.7721 0.9779
B6.A-Chr19 m 1.125 0.2019 1.5221 0.7279
B6.A-Chr2 f 2.375 0.2019 2.7721 1.9779
B6.A-Chr2 m 1.75 0.2019 2.1471 1.3529
B6.A-Chr3 f 2.0 0.2019 2.3971 1.6029
B6.A-Chr3 m 1.875 0.2019 2.2721 1.4779
B6.A-Chr4 f 2.375 0.2019 2.7721 1.9779
B6.A-Chr4 m 1.625 0.2019 2.0221 1.2279
B6.A-Chr5 f 2.5 0.2019 2.8971 2.1029
B6.A-Chr5 m 1.875 0.2019 2.2721 1.4779
B6.A-Chr6 f 1.5 0.2019 1.8971 1.1029
B6.A-Chr6 m 1.5 0.2019 1.8971 1.1029
B6.A-Chr7 f 1.625 0.2019 2.0221 1.2279
B6.A-Chr7 m 2.125 0.2019 2.5221 1.7279
B6.A-Chr8 f 1.5 0.2019 1.8971 1.1029
B6.A-Chr8 m 1.75 0.2019 2.1471 1.3529
B6.A-Chr9 f 1.5 0.2019 1.8971 1.1029
B6.A-Chr9 m 1.875 0.2019 2.2721 1.4779
B6.A-ChrX f 1.75 0.2019 2.1471 1.3529
B6.A-ChrX m 1.875 0.2019 2.2721 1.4779
B6.A-ChrY f 1.75 0.2019 2.1471 1.3529
B6.A-ChrY m 1.375 0.2019 1.7721 0.9779
C57BL/6J f 2.3125 0.1427 2.5933 2.0317
C57BL/6J m 1.625 0.2019 2.0221 1.2279


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 1.5312 0.1236 1.7744 1.2881
B6.A-Chr1 both 1.6875 0.1427 1.9683 1.4067
B6.A-Chr10 both 1.4375 0.1427 1.7183 1.1567
B6.A-Chr11 both 1.775 0.1354 2.0414 1.5086
B6.A-Chr12 both 1.25 0.1427 1.5308 0.9692
B6.A-Chr13 both 1.7286 0.1672 2.0574 1.3998
B6.A-Chr14 both 1.1875 0.1427 1.4683 0.9067
B6.A-Chr15 both 1.1875 0.1427 1.4683 0.9067
B6.A-Chr16 both 1.625 0.1427 1.9058 1.3442
B6.A-Chr17 both 1.25 0.1427 1.5308 0.9692
B6.A-Chr18 both 1.3125 0.1427 1.5933 1.0317
B6.A-Chr19 both 1.25 0.1427 1.5308 0.9692
B6.A-Chr2 both 2.0625 0.1427 2.3433 1.7817
B6.A-Chr3 both 1.9375 0.1427 2.2183 1.6567
B6.A-Chr4 both 2.0 0.1427 2.2808 1.7192
B6.A-Chr5 both 2.1875 0.1427 2.4683 1.9067
B6.A-Chr6 both 1.5 0.1427 1.7808 1.2192
B6.A-Chr7 both 1.875 0.1427 2.1558 1.5942
B6.A-Chr8 both 1.625 0.1427 1.9058 1.3442
B6.A-Chr9 both 1.6875 0.1427 1.9683 1.4067
B6.A-ChrX both 1.8125 0.1427 2.0933 1.5317
B6.A-ChrY both 1.5625 0.1427 1.8433 1.2817
C57BL/6J both 1.9688 0.1236 2.2119 1.7256




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA