Project measure / variable:   Lake2   abdominal_tone

ID, description, units MPD:21717   abdominal_tone   abdominal tone via palpation during supine restraint (score 0-2)   [score]  
Data set, strains Lake2   B6.A consomic w/par   23 strains     sex: both     age: 8wks
Procedure observation (SHIRPA)
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  STRAIN COMPARISON PLOT
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Lake2 - abdominal tone via palpation during supine restraint (score 0-2)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means1.00   score 1.00   score
Median of the strain means1.00   score 1.00   score
SD of the strain means± 0 ± 0
Coefficient of variation (CV)0 0
Min–max range of strain means1.00   –   1.00   score 1.00   –   1.00   score
Mean sample size per strain8.3   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0 0.0 0.8852 0.3474
strain 22 0.0 0.0 0.6131 0.9145
sex:strain 22 0.0 0.0 0.3191 0.9988
Residuals 335 0.0 0.0


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 1.0 0.0   16 0.0 0.0 1.0, 1.0 0.0
A/J m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr1 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr1 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr10 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr10 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr11 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr11 m 1.0 0.0   10 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr12 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr12 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr13 f 1.0 0.0   5 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr13 m 1.0 0.0   7 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr14 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr14 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr15 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr15 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr16 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr16 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr17 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr17 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr18 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr18 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr19 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr19 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr2 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr2 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr3 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr3 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr4 f 1.0 0.0   7 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr4 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr5 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr5 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr6 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr6 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr7 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr7 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr8 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr8 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr9 f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-Chr9 m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-ChrX f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-ChrX m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-ChrY f 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
B6.A-ChrY m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0
C57BL/6J f 1.0 0.0   16 0.0 0.0 1.0, 1.0 0.0
C57BL/6J m 1.0 0.0   8 0.0 0.0 1.0, 1.0 0.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 1.0 0.0 1.0 1.0
A/J m 1.0 0.0 1.0 1.0
B6.A-Chr1 f 1.0 0.0 1.0 1.0
B6.A-Chr1 m 1.0 0.0 1.0 1.0
B6.A-Chr10 f 1.0 0.0 1.0 1.0
B6.A-Chr10 m 1.0 0.0 1.0 1.0
B6.A-Chr11 f 1.0 0.0 1.0 1.0
B6.A-Chr11 m 1.0 0.0 1.0 1.0
B6.A-Chr12 f 1.0 0.0 1.0 1.0
B6.A-Chr12 m 1.0 0.0 1.0 1.0
B6.A-Chr13 f 1.0 0.0 1.0 1.0
B6.A-Chr13 m 1.0 0.0 1.0 1.0
B6.A-Chr14 f 1.0 0.0 1.0 1.0
B6.A-Chr14 m 1.0 0.0 1.0 1.0
B6.A-Chr15 f 1.0 0.0 1.0 1.0
B6.A-Chr15 m 1.0 0.0 1.0 1.0
B6.A-Chr16 f 1.0 0.0 1.0 1.0
B6.A-Chr16 m 1.0 0.0 1.0 1.0
B6.A-Chr17 f 1.0 0.0 1.0 1.0
B6.A-Chr17 m 1.0 0.0 1.0 1.0
B6.A-Chr18 f 1.0 0.0 1.0 1.0
B6.A-Chr18 m 1.0 0.0 1.0 1.0
B6.A-Chr19 f 1.0 0.0 1.0 1.0
B6.A-Chr19 m 1.0 0.0 1.0 1.0
B6.A-Chr2 f 1.0 0.0 1.0 1.0
B6.A-Chr2 m 1.0 0.0 1.0 1.0
B6.A-Chr3 f 1.0 0.0 1.0 1.0
B6.A-Chr3 m 1.0 0.0 1.0 1.0
B6.A-Chr4 f 1.0 0.0 1.0 1.0
B6.A-Chr4 m 1.0 0.0 1.0 1.0
B6.A-Chr5 f 1.0 0.0 1.0 1.0
B6.A-Chr5 m 1.0 0.0 1.0 1.0
B6.A-Chr6 f 1.0 0.0 1.0 1.0
B6.A-Chr6 m 1.0 0.0 1.0 1.0
B6.A-Chr7 f 1.0 0.0 1.0 1.0
B6.A-Chr7 m 1.0 0.0 1.0 1.0
B6.A-Chr8 f 1.0 0.0 1.0 1.0
B6.A-Chr8 m 1.0 0.0 1.0 1.0
B6.A-Chr9 f 1.0 0.0 1.0 1.0
B6.A-Chr9 m 1.0 0.0 1.0 1.0
B6.A-ChrX f 1.0 0.0 1.0 1.0
B6.A-ChrX m 1.0 0.0 1.0 1.0
B6.A-ChrY f 1.0 0.0 1.0 1.0
B6.A-ChrY m 1.0 0.0 1.0 1.0
C57BL/6J f 1.0 0.0 1.0 1.0
C57BL/6J m 1.0 0.0 1.0 1.0


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 1.0 0.0 1.0 1.0
B6.A-Chr1 both 1.0 0.0 1.0 1.0
B6.A-Chr10 both 1.0 0.0 1.0 1.0
B6.A-Chr11 both 1.0 0.0 1.0 1.0
B6.A-Chr12 both 1.0 0.0 1.0 1.0
B6.A-Chr13 both 1.0 0.0 1.0 1.0
B6.A-Chr14 both 1.0 0.0 1.0 1.0
B6.A-Chr15 both 1.0 0.0 1.0 1.0
B6.A-Chr16 both 1.0 0.0 1.0 1.0
B6.A-Chr17 both 1.0 0.0 1.0 1.0
B6.A-Chr18 both 1.0 0.0 1.0 1.0
B6.A-Chr19 both 1.0 0.0 1.0 1.0
B6.A-Chr2 both 1.0 0.0 1.0 1.0
B6.A-Chr3 both 1.0 0.0 1.0 1.0
B6.A-Chr4 both 1.0 0.0 1.0 1.0
B6.A-Chr5 both 1.0 0.0 1.0 1.0
B6.A-Chr6 both 1.0 0.0 1.0 1.0
B6.A-Chr7 both 1.0 0.0 1.0 1.0
B6.A-Chr8 both 1.0 0.0 1.0 1.0
B6.A-Chr9 both 1.0 0.0 1.0 1.0
B6.A-ChrX both 1.0 0.0 1.0 1.0
B6.A-ChrY both 1.0 0.0 1.0 1.0
C57BL/6J both 1.0 0.0 1.0 1.0




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA