Phenotype measure:   Lake2   freeze

ID, description, units MPD:21707   freeze   fear assessment during transfer to arena (score 0-1)   [score]
Data set, strains Lake2   B6.A consomic w/par   23 strains     sex: both     age: 8wks
Procedure observation (SHIRPA)
Ontology mappings

  STRAIN COMPARISON PLOT
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Lake2 - fear assessment during transfer to arena (score 0-1)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means0.158   score 0.165   score
Median of the strain means0.125   score 0.125   score
SD of the strain means± 0.182 ± 0.195
Coefficient of variation (CV)1.15 1.18
Min–max range of strain means0   –   0.750   score 0   –   0.750   score
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.022 0.022 0.1841 0.6682
strain 22 9.8464 0.4476 3.7502 < 0.0001
sex:strain 22 5.2803 0.24 2.0111 0.005
Residuals 336 40.1 0.1193


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 0.75 0.447   16 0.112 0.596 3.26
A/J m 0.5 0.535   8 0.189 1.07 1.72
B6.A-Chr1 f 0.5 0.535   8 0.189 1.07 1.89
B6.A-Chr1 m 0.25 0.463   8 0.164 1.85 0.43
B6.A-Chr10 f 0.125 0.354   8 0.125 2.83 -0.18
B6.A-Chr10 m 0.125 0.354   8 0.125 2.83 -0.21
B6.A-Chr11 f 0.25 0.463   8 0.164 1.85 0.51
B6.A-Chr11 m 0.3 0.483   10 0.153 1.61 0.69
B6.A-Chr12 f 0.0 0.0   8 0.0 0.0 -0.87
B6.A-Chr12 m 0.0 0.0   8 0.0 0.0 -0.85
B6.A-Chr13 f 0.0 0.0   5 0.0 0.0 -0.87
B6.A-Chr13 m 0.0 0.0   7 0.0 0.0 -0.85
B6.A-Chr14 f 0.0 0.0   8 0.0 0.0 -0.87
B6.A-Chr14 m 0.125 0.354   8 0.125 2.83 -0.21
B6.A-Chr15 f 0.25 0.463   8 0.164 1.85 0.51
B6.A-Chr15 m 0.0 0.0   8 0.0 0.0 -0.85
B6.A-Chr16 f 0.0 0.0   8 0.0 0.0 -0.87
B6.A-Chr16 m 0.125 0.354   8 0.125 2.83 -0.21
B6.A-Chr17 f 0.25 0.463   8 0.164 1.85 0.51
B6.A-Chr17 m 0.0 0.0   8 0.0 0.0 -0.85
B6.A-Chr18 f 0.125 0.354   8 0.125 2.83 -0.18
B6.A-Chr18 m 0.25 0.463   8 0.164 1.85 0.43
B6.A-Chr19 f 0.0 0.0   8 0.0 0.0 -0.87
B6.A-Chr19 m 0.0 0.0   8 0.0 0.0 -0.85
B6.A-Chr2 f 0.25 0.463   8 0.164 1.85 0.51
B6.A-Chr2 m 0.0 0.0   8 0.0 0.0 -0.85
B6.A-Chr3 f 0.125 0.354   8 0.125 2.83 -0.18
B6.A-Chr3 m 0.0 0.0   8 0.0 0.0 -0.85
B6.A-Chr4 f 0.25 0.463   8 0.164 1.85 0.51
B6.A-Chr4 m 0.125 0.354   8 0.125 2.83 -0.21
B6.A-Chr5 f 0.25 0.463   8 0.164 1.85 0.51
B6.A-Chr5 m 0.0 0.0   8 0.0 0.0 -0.85
B6.A-Chr6 f 0.0 0.0   8 0.0 0.0 -0.87
B6.A-Chr6 m 0.5 0.535   8 0.189 1.07 1.72
B6.A-Chr7 f 0.125 0.354   8 0.125 2.83 -0.18
B6.A-Chr7 m 0.125 0.354   8 0.125 2.83 -0.21
B6.A-Chr8 f 0.125 0.354   8 0.125 2.83 -0.18
B6.A-Chr8 m 0.25 0.463   8 0.164 1.85 0.43
B6.A-Chr9 f 0.0 0.0   8 0.0 0.0 -0.87
B6.A-Chr9 m 0.75 0.463   8 0.164 0.617 3.0
B6.A-ChrX f 0.125 0.354   8 0.125 2.83 -0.18
B6.A-ChrX m 0.125 0.354   8 0.125 2.83 -0.21
B6.A-ChrY f 0.0 0.0   8 0.0 0.0 -0.87
B6.A-ChrY m 0.125 0.354   8 0.125 2.83 -0.21
C57BL/6J f 0.125 0.342   16 0.0854 2.73 -0.18
C57BL/6J m 0.125 0.354   8 0.125 2.83 -0.21


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 0.75 0.0864 0.9199 0.5801
A/J m 0.5 0.1221 0.7403 0.2597
B6.A-Chr1 f 0.5 0.1221 0.7403 0.2597
B6.A-Chr1 m 0.25 0.1221 0.4903 0.0097
B6.A-Chr10 f 0.125 0.1221 0.3653 -0.1153
B6.A-Chr10 m 0.125 0.1221 0.3653 -0.1153
B6.A-Chr11 f 0.25 0.1221 0.4903 0.0097
B6.A-Chr11 m 0.3 0.1092 0.5149 0.0851
B6.A-Chr12 f 0.0 0.1221 0.2403 -0.2403
B6.A-Chr12 m 0.0 0.1221 0.2403 -0.2403
B6.A-Chr13 f 0.0 0.1545 0.3039 -0.3039
B6.A-Chr13 m 0.0 0.1306 0.2568 -0.2568
B6.A-Chr14 f 0.0 0.1221 0.2403 -0.2403
B6.A-Chr14 m 0.125 0.1221 0.3653 -0.1153
B6.A-Chr15 f 0.25 0.1221 0.4903 0.0097
B6.A-Chr15 m 0.0 0.1221 0.2403 -0.2403
B6.A-Chr16 f 0.0 0.1221 0.2403 -0.2403
B6.A-Chr16 m 0.125 0.1221 0.3653 -0.1153
B6.A-Chr17 f 0.25 0.1221 0.4903 0.0097
B6.A-Chr17 m 0.0 0.1221 0.2403 -0.2403
B6.A-Chr18 f 0.125 0.1221 0.3653 -0.1153
B6.A-Chr18 m 0.25 0.1221 0.4903 0.0097
B6.A-Chr19 f 0.0 0.1221 0.2403 -0.2403
B6.A-Chr19 m 0.0 0.1221 0.2403 -0.2403
B6.A-Chr2 f 0.25 0.1221 0.4903 0.0097
B6.A-Chr2 m 0.0 0.1221 0.2403 -0.2403
B6.A-Chr3 f 0.125 0.1221 0.3653 -0.1153
B6.A-Chr3 m 0.0 0.1221 0.2403 -0.2403
B6.A-Chr4 f 0.25 0.1221 0.4903 0.0097
B6.A-Chr4 m 0.125 0.1221 0.3653 -0.1153
B6.A-Chr5 f 0.25 0.1221 0.4903 0.0097
B6.A-Chr5 m 0.0 0.1221 0.2403 -0.2403
B6.A-Chr6 f 0.0 0.1221 0.2403 -0.2403
B6.A-Chr6 m 0.5 0.1221 0.7403 0.2597
B6.A-Chr7 f 0.125 0.1221 0.3653 -0.1153
B6.A-Chr7 m 0.125 0.1221 0.3653 -0.1153
B6.A-Chr8 f 0.125 0.1221 0.3653 -0.1153
B6.A-Chr8 m 0.25 0.1221 0.4903 0.0097
B6.A-Chr9 f 0.0 0.1221 0.2403 -0.2403
B6.A-Chr9 m 0.75 0.1221 0.9903 0.5097
B6.A-ChrX f 0.125 0.1221 0.3653 -0.1153
B6.A-ChrX m 0.125 0.1221 0.3653 -0.1153
B6.A-ChrY f 0.0 0.1221 0.2403 -0.2403
B6.A-ChrY m 0.125 0.1221 0.3653 -0.1153
C57BL/6J f 0.125 0.0864 0.2949 -0.0449
C57BL/6J m 0.125 0.1221 0.3653 -0.1153


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 0.625 0.0748 0.7721 0.4779
B6.A-Chr1 both 0.375 0.0864 0.5449 0.2051
B6.A-Chr10 both 0.125 0.0864 0.2949 -0.0449
B6.A-Chr11 both 0.275 0.0819 0.4362 0.1138
B6.A-Chr12 both 0.0 0.0864 0.1699 -0.1699
B6.A-Chr13 both 0.0 0.1011 0.199 -0.199
B6.A-Chr14 both 0.0625 0.0864 0.2324 -0.1074
B6.A-Chr15 both 0.125 0.0864 0.2949 -0.0449
B6.A-Chr16 both 0.0625 0.0864 0.2324 -0.1074
B6.A-Chr17 both 0.125 0.0864 0.2949 -0.0449
B6.A-Chr18 both 0.1875 0.0864 0.3574 0.0176
B6.A-Chr19 both 0.0 0.0864 0.1699 -0.1699
B6.A-Chr2 both 0.125 0.0864 0.2949 -0.0449
B6.A-Chr3 both 0.0625 0.0864 0.2324 -0.1074
B6.A-Chr4 both 0.1875 0.0864 0.3574 0.0176
B6.A-Chr5 both 0.125 0.0864 0.2949 -0.0449
B6.A-Chr6 both 0.25 0.0864 0.4199 0.0801
B6.A-Chr7 both 0.125 0.0864 0.2949 -0.0449
B6.A-Chr8 both 0.1875 0.0864 0.3574 0.0176
B6.A-Chr9 both 0.375 0.0864 0.5449 0.2051
B6.A-ChrX both 0.125 0.0864 0.2949 -0.0449
B6.A-ChrY both 0.0625 0.0864 0.2324 -0.1074
C57BL/6J both 0.125 0.0748 0.2721 -0.0221




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CKB, or AXBBXA