Project measure / variable:   Lake2   urination_jar

ID, description, units MPD:21705   urination_jar   number of urine puddles in view-jar   [n]  
Data set, strains Lake2   B6.A consomic w/par   23 strains     sex: both     age: 8wks
Procedure observation (SHIRPA)
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  STRAIN COMPARISON PLOT
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Lake2 - number of urine puddles in view-jar



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means0.0190   n 0.0163   n
Median of the strain means0   n 0   n
SD of the strain means± 0.0579 ± 0.0430
Coefficient of variation (CV)3.04 2.64
Min–max range of strain means0   –   0.250   n 0   –   0.125   n
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.0016 0.0016 0.0902 0.7641
strain 22 0.4746 0.0216 1.2208 0.2269
sex:strain 22 0.458 0.0208 1.1782 0.2646
Residuals 336 5.9375 0.0177


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 0.0 0.0   16 0.0 0.0 -0.33
A/J m 0.0 0.0   8 0.0 0.0 -0.38
B6.A-Chr1 f 0.0 0.0   8 0.0 0.0 -0.33
B6.A-Chr1 m 0.0 0.0   8 0.0 0.0 -0.38
B6.A-Chr10 f 0.0 0.0   8 0.0 0.0 -0.33
B6.A-Chr10 m 0.0 0.0   8 0.0 0.0 -0.38
B6.A-Chr11 f 0.0 0.0   8 0.0 0.0 -0.33
B6.A-Chr11 m 0.0 0.0   10 0.0 0.0 -0.38
B6.A-Chr12 f 0.0 0.0   8 0.0 0.0 -0.33
B6.A-Chr12 m 0.0 0.0   8 0.0 0.0 -0.38
B6.A-Chr13 f 0.0 0.0   5 0.0 0.0 -0.33
B6.A-Chr13 m 0.0 0.0   7 0.0 0.0 -0.38
B6.A-Chr14 f 0.125 0.354   8 0.125 2.83 1.83
B6.A-Chr14 m 0.0 0.0   8 0.0 0.0 -0.38
B6.A-Chr15 f 0.0 0.0   8 0.0 0.0 -0.33
B6.A-Chr15 m 0.0 0.0   8 0.0 0.0 -0.38
B6.A-Chr16 f 0.0 0.0   8 0.0 0.0 -0.33
B6.A-Chr16 m 0.125 0.354   8 0.125 2.83 2.53
B6.A-Chr17 f 0.0 0.0   8 0.0 0.0 -0.33
B6.A-Chr17 m 0.0 0.0   8 0.0 0.0 -0.38
B6.A-Chr18 f 0.0 0.0   8 0.0 0.0 -0.33
B6.A-Chr18 m 0.0 0.0   8 0.0 0.0 -0.38
B6.A-Chr19 f 0.0 0.0   8 0.0 0.0 -0.33
B6.A-Chr19 m 0.0 0.0   8 0.0 0.0 -0.38
B6.A-Chr2 f 0.0 0.0   8 0.0 0.0 -0.33
B6.A-Chr2 m 0.0 0.0   8 0.0 0.0 -0.38
B6.A-Chr3 f 0.0 0.0   8 0.0 0.0 -0.33
B6.A-Chr3 m 0.125 0.354   8 0.125 2.83 2.53
B6.A-Chr4 f 0.0 0.0   8 0.0 0.0 -0.33
B6.A-Chr4 m 0.0 0.0   8 0.0 0.0 -0.38
B6.A-Chr5 f 0.0 0.0   8 0.0 0.0 -0.33
B6.A-Chr5 m 0.0 0.0   8 0.0 0.0 -0.38
B6.A-Chr6 f 0.0 0.0   8 0.0 0.0 -0.33
B6.A-Chr6 m 0.0 0.0   8 0.0 0.0 -0.38
B6.A-Chr7 f 0.0 0.0   8 0.0 0.0 -0.33
B6.A-Chr7 m 0.0 0.0   8 0.0 0.0 -0.38
B6.A-Chr8 f 0.0 0.0   8 0.0 0.0 -0.33
B6.A-Chr8 m 0.0 0.0   8 0.0 0.0 -0.38
B6.A-Chr9 f 0.25 0.463   8 0.164 1.85 3.99
B6.A-Chr9 m 0.0 0.0   8 0.0 0.0 -0.38
B6.A-ChrX f 0.0 0.0   8 0.0 0.0 -0.33
B6.A-ChrX m 0.0 0.0   8 0.0 0.0 -0.38
B6.A-ChrY f 0.0 0.0   8 0.0 0.0 -0.33
B6.A-ChrY m 0.0 0.0   8 0.0 0.0 -0.38
C57BL/6J f 0.0625 0.25   16 0.0625 4.0 0.75
C57BL/6J m 0.125 0.354   8 0.125 2.83 2.53


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 0.0 0.0332 0.0654 -0.0654
A/J m 0.0 0.047 0.0924 -0.0924
B6.A-Chr1 f 0.0 0.047 0.0924 -0.0924
B6.A-Chr1 m 0.0 0.047 0.0924 -0.0924
B6.A-Chr10 f 0.0 0.047 0.0924 -0.0924
B6.A-Chr10 m 0.0 0.047 0.0924 -0.0924
B6.A-Chr11 f 0.0 0.047 0.0924 -0.0924
B6.A-Chr11 m 0.0 0.042 0.0827 -0.0827
B6.A-Chr12 f 0.0 0.047 0.0924 -0.0924
B6.A-Chr12 m 0.0 0.047 0.0924 -0.0924
B6.A-Chr13 f 0.0 0.0594 0.1169 -0.1169
B6.A-Chr13 m 0.0 0.0502 0.0988 -0.0988
B6.A-Chr14 f 0.125 0.047 0.2174 0.0326
B6.A-Chr14 m 0.0 0.047 0.0924 -0.0924
B6.A-Chr15 f 0.0 0.047 0.0924 -0.0924
B6.A-Chr15 m 0.0 0.047 0.0924 -0.0924
B6.A-Chr16 f 0.0 0.047 0.0924 -0.0924
B6.A-Chr16 m 0.125 0.047 0.2174 0.0326
B6.A-Chr17 f 0.0 0.047 0.0924 -0.0924
B6.A-Chr17 m 0.0 0.047 0.0924 -0.0924
B6.A-Chr18 f 0.0 0.047 0.0924 -0.0924
B6.A-Chr18 m 0.0 0.047 0.0924 -0.0924
B6.A-Chr19 f 0.0 0.047 0.0924 -0.0924
B6.A-Chr19 m 0.0 0.047 0.0924 -0.0924
B6.A-Chr2 f 0.0 0.047 0.0924 -0.0924
B6.A-Chr2 m 0.0 0.047 0.0924 -0.0924
B6.A-Chr3 f 0.0 0.047 0.0924 -0.0924
B6.A-Chr3 m 0.125 0.047 0.2174 0.0326
B6.A-Chr4 f 0.0 0.047 0.0924 -0.0924
B6.A-Chr4 m 0.0 0.047 0.0924 -0.0924
B6.A-Chr5 f 0.0 0.047 0.0924 -0.0924
B6.A-Chr5 m 0.0 0.047 0.0924 -0.0924
B6.A-Chr6 f 0.0 0.047 0.0924 -0.0924
B6.A-Chr6 m 0.0 0.047 0.0924 -0.0924
B6.A-Chr7 f 0.0 0.047 0.0924 -0.0924
B6.A-Chr7 m 0.0 0.047 0.0924 -0.0924
B6.A-Chr8 f 0.0 0.047 0.0924 -0.0924
B6.A-Chr8 m 0.0 0.047 0.0924 -0.0924
B6.A-Chr9 f 0.25 0.047 0.3424 0.1576
B6.A-Chr9 m 0.0 0.047 0.0924 -0.0924
B6.A-ChrX f 0.0 0.047 0.0924 -0.0924
B6.A-ChrX m 0.0 0.047 0.0924 -0.0924
B6.A-ChrY f 0.0 0.047 0.0924 -0.0924
B6.A-ChrY m 0.0 0.047 0.0924 -0.0924
C57BL/6J f 0.0625 0.0332 0.1279 -0.0029
C57BL/6J m 0.125 0.047 0.2174 0.0326


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 0.0 0.0288 0.0566 -0.0566
B6.A-Chr1 both 0.0 0.0332 0.0654 -0.0654
B6.A-Chr10 both 0.0 0.0332 0.0654 -0.0654
B6.A-Chr11 both 0.0 0.0315 0.062 -0.062
B6.A-Chr12 both 0.0 0.0332 0.0654 -0.0654
B6.A-Chr13 both 0.0 0.0389 0.0766 -0.0766
B6.A-Chr14 both 0.0625 0.0332 0.1279 -0.0029
B6.A-Chr15 both 0.0 0.0332 0.0654 -0.0654
B6.A-Chr16 both 0.0625 0.0332 0.1279 -0.0029
B6.A-Chr17 both 0.0 0.0332 0.0654 -0.0654
B6.A-Chr18 both 0.0 0.0332 0.0654 -0.0654
B6.A-Chr19 both 0.0 0.0332 0.0654 -0.0654
B6.A-Chr2 both 0.0 0.0332 0.0654 -0.0654
B6.A-Chr3 both 0.0625 0.0332 0.1279 -0.0029
B6.A-Chr4 both 0.0 0.0332 0.0654 -0.0654
B6.A-Chr5 both 0.0 0.0332 0.0654 -0.0654
B6.A-Chr6 both 0.0 0.0332 0.0654 -0.0654
B6.A-Chr7 both 0.0 0.0332 0.0654 -0.0654
B6.A-Chr8 both 0.0 0.0332 0.0654 -0.0654
B6.A-Chr9 both 0.125 0.0332 0.1904 0.0596
B6.A-ChrX both 0.0 0.0332 0.0654 -0.0654
B6.A-ChrY both 0.0 0.0332 0.0654 -0.0654
C57BL/6J both 0.0937 0.0288 0.1504 0.0371




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA