Phenotype measure:   Lake2   twitch

ID, description, units MPD:21703   twitch   short sporadic twitches in view-jar (score 0-2)   [score]
Data set, strains Lake2   B6.A consomic w/par   23 strains     sex: both     age: 8wks
Procedure observation (SHIRPA)
Ontology mappings

  STRAIN COMPARISON PLOT
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Lake2 - short sporadic twitches in view-jar (score 0-2)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means0.0815   score 0.0163   score
Median of the strain means0   score 0   score
SD of the strain means± 0.231 ± 0.0572
Coefficient of variation (CV)2.84 3.51
Min–max range of strain means0   –   1.00   score 0   –   0.250   score
Mean sample size per strain8.4   mice 8.0   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.3931 1.3931 53.4964 < 0.0001
strain 22 11.1398 0.5064 19.4441 < 0.0001
sex:strain 22 6.361 0.2891 11.1029 < 0.0001
Residuals 336 8.75 0.026


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 0.5 0.516   16 0.129 1.03 1.81
A/J m 0.0 0.0   8 0.0 0.0 -0.28
B6.A-Chr1 f 0.0 0.0   8 0.0 0.0 -0.35
B6.A-Chr1 m 0.0 0.0   8 0.0 0.0 -0.28
B6.A-Chr10 f 0.0 0.0   8 0.0 0.0 -0.35
B6.A-Chr10 m 0.0 0.0   8 0.0 0.0 -0.28
B6.A-Chr11 f 0.0 0.0   8 0.0 0.0 -0.35
B6.A-Chr11 m 0.0 0.0   10 0.0 0.0 -0.28
B6.A-Chr12 f 0.0 0.0   8 0.0 0.0 -0.35
B6.A-Chr12 m 0.0 0.0   8 0.0 0.0 -0.28
B6.A-Chr13 f 0.0 0.0   5 0.0 0.0 -0.35
B6.A-Chr13 m 0.0 0.0   7 0.0 0.0 -0.28
B6.A-Chr14 f 0.0 0.0   8 0.0 0.0 -0.35
B6.A-Chr14 m 0.0 0.0   8 0.0 0.0 -0.28
B6.A-Chr15 f 0.0 0.0   8 0.0 0.0 -0.35
B6.A-Chr15 m 0.0 0.0   8 0.0 0.0 -0.28
B6.A-Chr16 f 0.25 0.463   8 0.164 1.85 0.73
B6.A-Chr16 m 0.125 0.354   8 0.125 2.83 1.9
B6.A-Chr17 f 0.0 0.0   8 0.0 0.0 -0.35
B6.A-Chr17 m 0.0 0.0   8 0.0 0.0 -0.28
B6.A-Chr18 f 0.0 0.0   8 0.0 0.0 -0.35
B6.A-Chr18 m 0.0 0.0   8 0.0 0.0 -0.28
B6.A-Chr19 f 0.0 0.0   8 0.0 0.0 -0.35
B6.A-Chr19 m 0.0 0.0   8 0.0 0.0 -0.28
B6.A-Chr2 f 0.0 0.0   8 0.0 0.0 -0.35
B6.A-Chr2 m 0.0 0.0   8 0.0 0.0 -0.28
B6.A-Chr3 f 0.0 0.0   8 0.0 0.0 -0.35
B6.A-Chr3 m 0.0 0.0   8 0.0 0.0 -0.28
B6.A-Chr4 f 0.0 0.0   8 0.0 0.0 -0.35
B6.A-Chr4 m 0.25 0.463   8 0.164 1.85 4.08
B6.A-Chr5 f 0.0 0.0   8 0.0 0.0 -0.35
B6.A-Chr5 m 0.0 0.0   8 0.0 0.0 -0.28
B6.A-Chr6 f 0.0 0.0   8 0.0 0.0 -0.35
B6.A-Chr6 m 0.0 0.0   8 0.0 0.0 -0.28
B6.A-Chr7 f 0.0 0.0   8 0.0 0.0 -0.35
B6.A-Chr7 m 0.0 0.0   8 0.0 0.0 -0.28
B6.A-Chr8 f 0.125 0.354   8 0.125 2.83 0.19
B6.A-Chr8 m 0.0 0.0   8 0.0 0.0 -0.28
B6.A-Chr9 f 0.0 0.0   8 0.0 0.0 -0.35
B6.A-Chr9 m 0.0 0.0   8 0.0 0.0 -0.28
B6.A-ChrX f 0.0 0.0   8 0.0 0.0 -0.35
B6.A-ChrX m 0.0 0.0   8 0.0 0.0 -0.28
B6.A-ChrY f 0.0 0.0   8 0.0 0.0 -0.35
B6.A-ChrY m 0.0 0.0   8 0.0 0.0 -0.28
C57BL/6J f 1.0 0.0   16 0.0 0.0 1.0, 1.0 3.97
C57BL/6J m 0.0 0.0   8 0.0 0.0 -0.28


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 0.5 0.0403 0.5794 0.4206
A/J m 0.0 0.0571 0.1122 -0.1122
B6.A-Chr1 f 0.0 0.0571 0.1122 -0.1122
B6.A-Chr1 m 0.0 0.0571 0.1122 -0.1122
B6.A-Chr10 f 0.0 0.0571 0.1122 -0.1122
B6.A-Chr10 m 0.0 0.0571 0.1122 -0.1122
B6.A-Chr11 f 0.0 0.0571 0.1122 -0.1122
B6.A-Chr11 m 0.0 0.051 0.1004 -0.1004
B6.A-Chr12 f 0.0 0.0571 0.1122 -0.1122
B6.A-Chr12 m 0.0 0.0571 0.1122 -0.1122
B6.A-Chr13 f 0.0 0.0722 0.142 -0.142
B6.A-Chr13 m 0.0 0.061 0.12 -0.12
B6.A-Chr14 f 0.0 0.0571 0.1122 -0.1122
B6.A-Chr14 m 0.0 0.0571 0.1122 -0.1122
B6.A-Chr15 f 0.0 0.0571 0.1122 -0.1122
B6.A-Chr15 m 0.0 0.0571 0.1122 -0.1122
B6.A-Chr16 f 0.25 0.0571 0.3622 0.1378
B6.A-Chr16 m 0.125 0.0571 0.2372 0.0128
B6.A-Chr17 f 0.0 0.0571 0.1122 -0.1122
B6.A-Chr17 m 0.0 0.0571 0.1122 -0.1122
B6.A-Chr18 f 0.0 0.0571 0.1122 -0.1122
B6.A-Chr18 m 0.0 0.0571 0.1122 -0.1122
B6.A-Chr19 f 0.0 0.0571 0.1122 -0.1122
B6.A-Chr19 m 0.0 0.0571 0.1122 -0.1122
B6.A-Chr2 f 0.0 0.0571 0.1122 -0.1122
B6.A-Chr2 m 0.0 0.0571 0.1122 -0.1122
B6.A-Chr3 f 0.0 0.0571 0.1122 -0.1122
B6.A-Chr3 m 0.0 0.0571 0.1122 -0.1122
B6.A-Chr4 f 0.0 0.0571 0.1122 -0.1122
B6.A-Chr4 m 0.25 0.0571 0.3622 0.1378
B6.A-Chr5 f 0.0 0.0571 0.1122 -0.1122
B6.A-Chr5 m 0.0 0.0571 0.1122 -0.1122
B6.A-Chr6 f 0.0 0.0571 0.1122 -0.1122
B6.A-Chr6 m 0.0 0.0571 0.1122 -0.1122
B6.A-Chr7 f 0.0 0.0571 0.1122 -0.1122
B6.A-Chr7 m 0.0 0.0571 0.1122 -0.1122
B6.A-Chr8 f 0.125 0.0571 0.2372 0.0128
B6.A-Chr8 m 0.0 0.0571 0.1122 -0.1122
B6.A-Chr9 f 0.0 0.0571 0.1122 -0.1122
B6.A-Chr9 m 0.0 0.0571 0.1122 -0.1122
B6.A-ChrX f 0.0 0.0571 0.1122 -0.1122
B6.A-ChrX m 0.0 0.0571 0.1122 -0.1122
B6.A-ChrY f 0.0 0.0571 0.1122 -0.1122
B6.A-ChrY m 0.0 0.0571 0.1122 -0.1122
C57BL/6J f 1.0 0.0403 1.0794 0.9206
C57BL/6J m 0.0 0.0571 0.1122 -0.1122


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 0.25 0.0349 0.3187 0.1813
B6.A-Chr1 both 0.0 0.0403 0.0794 -0.0794
B6.A-Chr10 both 0.0 0.0403 0.0794 -0.0794
B6.A-Chr11 both 0.0 0.0383 0.0753 -0.0753
B6.A-Chr12 both 0.0 0.0403 0.0794 -0.0794
B6.A-Chr13 both 0.0 0.0472 0.0929 -0.0929
B6.A-Chr14 both 0.0 0.0403 0.0794 -0.0794
B6.A-Chr15 both 0.0 0.0403 0.0794 -0.0794
B6.A-Chr16 both 0.1875 0.0403 0.2669 0.1081
B6.A-Chr17 both 0.0 0.0403 0.0794 -0.0794
B6.A-Chr18 both 0.0 0.0403 0.0794 -0.0794
B6.A-Chr19 both 0.0 0.0403 0.0794 -0.0794
B6.A-Chr2 both 0.0 0.0403 0.0794 -0.0794
B6.A-Chr3 both 0.0 0.0403 0.0794 -0.0794
B6.A-Chr4 both 0.125 0.0403 0.2044 0.0456
B6.A-Chr5 both 0.0 0.0403 0.0794 -0.0794
B6.A-Chr6 both 0.0 0.0403 0.0794 -0.0794
B6.A-Chr7 both 0.0 0.0403 0.0794 -0.0794
B6.A-Chr8 both 0.0625 0.0403 0.1419 -0.0169
B6.A-Chr9 both 0.0 0.0403 0.0794 -0.0794
B6.A-ChrX both 0.0 0.0403 0.0794 -0.0794
B6.A-ChrY both 0.0 0.0403 0.0794 -0.0794
C57BL/6J both 0.5 0.0349 0.5687 0.4313




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA