Phenotype measure:   Wiltshire1   pct_light_LD



  STRAIN COMPARISON PLOT
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Wiltshire1 - percent duration in light zone, 10 min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested26 strains26 strains
Mean of the strain means11.0   % 11.7   %
Median of the strain means6.94   % 9.14   %
SD of the strain means± 9.77 ± 9.77
Coefficient of variation (CV)0.885 0.835
Min–max range of strain means0.188   –   33.6   % 0   –   36.1   %
Mean sample size per strain5.0   mice 4.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 18.5765 18.5765 0.295 0.5876
strain 25 20691.1533 827.6461 13.1426 < 0.0001
sex:strain 25 2628.0118 105.1205 1.6693 0.0288
Residuals 204 12846.7687 62.9744


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 0.188 0.416   8 0.147 2.22 0.0, 1.2 -1.11
129S1/SvImJ m 4.66 4.95   8 1.75 1.06 0.0, 10.4 -0.72
A/J f 0.287 0.217   8 0.0766 0.754 0.0, 0.7 -1.1
A/J m 0.0 0.0   8 0.0 0.0 0.0, 0.0 -1.2
AKR/J f 1.57 1.55   8 0.549 0.986 0.0, 3.9 -0.97
AKR/J m 3.04 4.33   8 1.53 1.42 0.0, 11.9 -0.89
BALB/cByJ f 0.238 0.56   8 0.198 2.36 0.0, 1.6 -1.11
BALB/cByJ m 0.287 0.419   8 0.148 1.46 0.0, 1.0 -1.17
BUB/BnJ f 6.47 4.43   4 2.22 0.684 2.8, 12.7 -0.47
BUB/BnJ m 6.23 5.36   4 2.68 0.861 0.0, 12.6 -0.56
C3H/HeJ f 24.4 8.24   4 4.12 0.337 15.3, 35.3 1.37
C3H/HeJ m 36.1 7.04   4 3.52 0.195 30.5, 46.4 2.5
C57BL/6J f 6.4 1.86   4 0.928 0.29 4.6, 8.1 -0.48
C57BL/6J m 9.62 4.81   4 2.4 0.499 3.1, 14.2 -0.21
C57BR/cdJ f 20.1 6.02   4 3.01 0.3 14.6, 25.8 0.93
C57BR/cdJ m 21.5 4.09   4 2.05 0.19 18.2, 26.8 1.0
C58/J f 7.4 4.66   4 2.33 0.63 0.9, 12.0 -0.37
C58/J m 6.55 5.41   4 2.7 0.826 0.0, 12.2 -0.53
CBA/J f 33.6 34.5   4 17.3 1.03 12.3, 85.2 2.31
CBA/J m 5.17 2.97   3 1.72 0.576 3.4, 8.6 -0.67
CE/J f 19.6 1.2   2   0.85 0.0612 18.8, 20.5 0.88
CE/J m 20.0 14.1   4 7.06 0.707 0.0, 31.8 0.85
DBA/2J f 2.17 1.74   4 0.872 0.802 0.6, 4.1 -0.91
DBA/2J m 4.5 3.54   4 1.77 0.787 0.0, 8.6 -0.74
FVB/NJ f 26.6 6.9   8 2.44 0.259 17.6, 36.8 1.59
FVB/NJ m 18.2 11.2   7 4.25 0.618 0.0, 35.0 0.66
LG/J f 0.275 0.55   4 0.275 2.0 0.0, 1.1 -1.1
LG/J m 1.32 2.65   4 1.32 2.0 0.0, 5.3 -1.06
MA/MyJ f 18.3 8.55   4 4.28 0.467 7.3, 27.3 0.74
MA/MyJ m 17.6 12.1   4 6.06 0.688 0.0, 27.6 0.6
MRL/MpJ f 5.45 13.2   8 4.66 2.42 0.0, 37.8 -0.57
MRL/MpJ m 3.58 9.99   8 3.53 2.79 0.0, 28.3 -0.83
NOD/ShiLtJ f 4.7 5.06   8 1.79 1.08 0.3, 15.5 -0.65
NOD/ShiLtJ m 9.59 10.0   8 3.54 1.04 0.0, 23.7 -0.22
NON/ShiLtJ f 6.43 5.69   3 3.28 0.884 0.0, 10.8 -0.47
NON/ShiLtJ m 4.67 3.21   4 1.6 0.686 1.1, 8.7 -0.72
NZO/HlLtJ f 2.3 1.91   4 0.957 0.833 0.0, 4.4 -0.89
NZO/HlLtJ m 2.08 2.65   4 1.32 1.28 0.2, 6.0 -0.99
NZW/LacJ f 16.8 6.73   4 3.37 0.4 9.5, 25.8 0.59
NZW/LacJ m 29.3 11.0   4 5.49 0.375 15.7, 39.3 1.8
P/J f 3.5 4.66   4 2.33 1.33 0.0, 9.9 -0.77
P/J m 10.9 15.0   2   10.6 1.38 0.3, 21.5 -0.08
PL/J f 25.1 10.8   4 5.41 0.431 9.1, 32.6 1.44
PL/J m 26.6 6.44   4 3.22 0.242 20.0, 35.1 1.52
SJL/J f 7.45 3.64   4 1.82 0.489 5.4, 12.9 -0.37
SJL/J m 8.7 9.47   4 4.73 1.09 0.1, 22.2 -0.31
SM/J f 13.2 6.19   4 3.09 0.468 8.0, 22.2 0.22
SM/J m 16.0 11.1   4 5.55 0.696 1.4, 28.3 0.44
SWR/J f 15.6 7.32   4 3.66 0.469 8.6, 25.8 0.47
SWR/J m 21.7 5.85   3 3.38 0.27 15.9, 27.6 1.02
WSB/EiJ f 19.0 6.79   4 3.4 0.358 9.5, 24.0 0.81
WSB/EiJ m 16.6 9.63   4 4.81 0.581 9.0, 30.6 0.5


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 0.1875 2.8057 5.7193 -5.3443
129S1/SvImJ m 4.6625 2.8057 10.1943 -0.8693
A/J f 0.2875 2.8057 5.8193 -5.2443
A/J m 0.0 2.8057 5.5318 -5.5318
AKR/J f 1.575 2.8057 7.1068 -3.9568
AKR/J m 3.0375 2.8057 8.5693 -2.4943
BALB/cByJ f 0.2375 2.8057 5.7693 -5.2943
BALB/cByJ m 0.2875 2.8057 5.8193 -5.2443
BUB/BnJ f 6.475 3.9678 14.2982 -1.3482
BUB/BnJ m 6.225 3.9678 14.0482 -1.5982
C3H/HeJ f 24.425 3.9678 32.2482 16.6018
C3H/HeJ m 36.15 3.9678 43.9732 28.3268
C57BL/6J f 6.4 3.9678 14.2232 -1.4232
C57BL/6J m 9.625 3.9678 17.4482 1.8018
C57BR/cdJ f 20.05 3.9678 27.8732 12.2268
C57BR/cdJ m 21.55 3.9678 29.3732 13.7268
C58/J f 7.4 3.9678 15.2232 -0.4232
C58/J m 6.55 3.9678 14.3732 -1.2732
CBA/J f 33.625 3.9678 41.4482 25.8018
CBA/J m 5.1667 4.5816 14.2001 -3.8668
CE/J f 19.65 5.6113 30.7137 8.5863
CE/J m 19.975 3.9678 27.7982 12.1518
DBA/2J f 2.175 3.9678 9.9982 -5.6482
DBA/2J m 4.5 3.9678 12.3232 -3.3232
FVB/NJ f 26.6 2.8057 32.1318 21.0682
FVB/NJ m 18.2 2.9994 24.1138 12.2862
LG/J f 0.275 3.9678 8.0982 -7.5482
LG/J m 1.325 3.9678 9.1482 -6.4982
MA/MyJ f 18.325 3.9678 26.1482 10.5018
MA/MyJ m 17.6 3.9678 25.4232 9.7768
MRL/MpJ f 5.45 2.8057 10.9818 -0.0818
MRL/MpJ m 3.575 2.8057 9.1068 -1.9568
NOD/ShiLtJ f 4.7 2.8057 10.2318 -0.8318
NOD/ShiLtJ m 9.5875 2.8057 15.1193 4.0557
NON/ShiLtJ f 6.4333 4.5816 15.4668 -2.6001
NON/ShiLtJ m 4.675 3.9678 12.4982 -3.1482
NZO/HlLtJ f 2.3 3.9678 10.1232 -5.5232
NZO/HlLtJ m 2.075 3.9678 9.8982 -5.7482
NZW/LacJ f 16.825 3.9678 24.6482 9.0018
NZW/LacJ m 29.275 3.9678 37.0982 21.4518
P/J f 3.5 3.9678 11.3232 -4.3232
P/J m 10.9 5.6113 21.9637 -0.1637
PL/J f 25.075 3.9678 32.8982 17.2518
PL/J m 26.575 3.9678 34.3982 18.7518
SJL/J f 7.45 3.9678 15.2732 -0.3732
SJL/J m 8.7 3.9678 16.5232 0.8768
SM/J f 13.225 3.9678 21.0482 5.4018
SM/J m 15.95 3.9678 23.7732 8.1268
SWR/J f 15.6 3.9678 23.4232 7.7768
SWR/J m 21.6667 4.5816 30.7001 12.6332
WSB/EiJ f 18.975 3.9678 26.7982 11.1518
WSB/EiJ m 16.575 3.9678 24.3982 8.7518


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 2.425 1.9839 6.3366 -1.4866
A/J both 0.1437 1.9839 4.0553 -3.7678
AKR/J both 2.3062 1.9839 6.2178 -1.6053
BALB/cByJ both 0.2625 1.9839 4.1741 -3.6491
BUB/BnJ both 6.35 2.8057 11.8818 0.8182
C3H/HeJ both 30.2875 2.8057 35.8193 24.7557
C57BL/6J both 8.0125 2.8057 13.5443 2.4807
C57BR/cdJ both 20.8 2.8057 26.3318 15.2682
C58/J both 6.975 2.8057 12.5068 1.4432
CBA/J both 19.3958 3.0305 25.3709 13.4208
CE/J both 19.8125 3.4362 26.5876 13.0374
DBA/2J both 3.3375 2.8057 8.8693 -2.1943
FVB/NJ both 22.4 2.0535 26.4489 18.3511
LG/J both 0.8 2.8057 6.3318 -4.7318
MA/MyJ both 17.9625 2.8057 23.4943 12.4307
MRL/MpJ both 4.5125 1.9839 8.4241 0.6009
NOD/ShiLtJ both 7.1437 1.9839 11.0553 3.2322
NON/ShiLtJ both 5.5542 3.0305 11.5292 -0.4209
NZO/HlLtJ both 2.1875 2.8057 7.7193 -3.3443
NZW/LacJ both 23.05 2.8057 28.5818 17.5182
P/J both 7.2 3.4362 13.9751 0.4249
PL/J both 25.825 2.8057 31.3568 20.2932
SJL/J both 8.075 2.8057 13.6068 2.5432
SM/J both 14.5875 2.8057 20.1193 9.0557
SWR/J both 18.6333 3.0305 24.6084 12.6583
WSB/EiJ both 17.775 2.8057 23.3068 12.2432




  GENOME-WIDE ASSOCIATION (GWAS) VIEW
Plot generated with pyLMM using 132K SNP array. Click on plot to view at larger size.