Project measure / variable:   Wiltshire1   rear_OFT

ID, description, units MPD:21402   rear_OFT   total rearing events, 10 min   [n]  
Data set, strains Wiltshire1   inbred   38 strains     sex: both     age: 12-14wks
Procedure open field test
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  STRAIN COMPARISON PLOT
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Wiltshire1 - total rearing events, 10 min



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested37 strains37 strains
Mean of the strain means76.5   n 88.7   n
Median of the strain means69.4   n 79.5   n
SD of the strain means± 42.4 ± 48.1
Coefficient of variation (CV)0.554 0.542
Min–max range of strain means1.00   –   166   n 8.07   –   179   n
Mean sample size per strain12.5   mice 12.5   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 22970.4442 22970.4442 23.6799 < 0.0001
strain 35 1771166.6423 50604.7612 52.1677 < 0.0001
sex:strain 35 61048.5809 1744.2452 1.7981 0.0034
Residuals 834 809012.7398 970.0393


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ f 1.0 1.47   14 0.392 1.47 -1.78
129S1/SvImJ m 8.07 10.4   14 2.78 1.29 -1.68
A/J f 8.0 13.6   14 3.64 1.7 -1.62
A/J m 11.4 13.6   14 3.63 1.19 -1.61
AKR/J f 54.4 22.4   16 5.6 0.412 5.0, 91.0 -0.52
AKR/J m 77.6 27.0   14 7.2 0.347 27.0, 112.0 -0.23
BALB/cByJ f 52.7 31.2   13 8.65 0.592 18.0, 127.0 -0.56
BALB/cByJ m 59.7 31.8   14 8.51 0.533 1.0, 117.0 -0.6
BTBR T+ Itpr3tf/J f 46.9 17.9   16 4.47 0.381 21.0, 85.0 -0.7
BTBR T+ Itpr3tf/J m 55.5 23.2   16 5.8 0.418 33.0, 123.0 -0.69
BUB/BnJ f 49.0 15.9   12 4.58 0.324 19.0, 83.0 -0.65
BUB/BnJ m 69.3 26.8   7 10.1 0.387 23.0, 101.0 -0.4
C3H/HeJ f 83.5 38.3   15 9.9 0.459 11.0, 167.0 0.16
C3H/HeJ m 93.5 34.7   15 8.96 0.371 39.0, 167.0 0.1
C57BL/6J f 69.4 24.3   27 4.67 0.35 36.0, 142.0 -0.17
C57BL/6J m 95.1 36.4   16 9.09 0.382 26.0, 155.0 0.13
C57BR/cdJ f 93.8 25.0   15 6.45 0.266 59.0, 143.0 0.41
C57BR/cdJ m 116.0 32.2   14 8.6 0.277 65.0, 176.0 0.57
C58/J f 63.4 24.7   16 6.19 0.39 27.0, 121.0 -0.31
C58/J m 83.4 27.7   16 6.92 0.332 26.0, 126.0 -0.11
CBA/J f 57.1 45.3   15 11.7 0.794 -0.46
CBA/J m 54.1 40.2   15 10.4 0.743 3.0, 154.0 -0.72
CE/J f 78.0 57.2   4 28.6 0.733 27.0, 143.0 0.03
CE/J m 84.4 22.9   8 8.1 0.271 48.0, 104.0 -0.09
CZECHII/EiJ f 28.5 17.3   10 5.49 0.609 6.0, 55.0 -1.13
CZECHII/EiJ m 40.1 19.1   8 6.74 0.475 15.0, 80.0 -1.01
DBA/2J f 78.0 25.7   14 6.87 0.329 43.0, 131.0 0.03
DBA/2J m 79.5 33.4   14 8.94 0.421 41.0, 181.0 -0.19
DDY/JclSidSeyFrkJ m 55.6 18.2   8 6.42 0.327 34.0, 90.0 -0.69
FVB/NJ f 154.0 24.5   14 6.55 0.159 122.0, 192.0 1.83
FVB/NJ m 173.0 47.6   14 12.7 0.275 102.0, 262.0 1.75
I/LnJ f 83.2 42.9   4 21.5 0.516 46.0, 145.0 0.16
I/LnJ m 87.5 13.9   8 4.93 0.159 63.0, 104.0 -0.03
KK/HlJ f 48.5 24.7   12 7.14 0.51 4.0, 81.0 -0.66
KK/HlJ m 44.1 18.5   17 4.5 0.42 12.0, 70.0 -0.93
LG/J f 117.0 35.1   12 10.1 0.301 81.0, 192.0 0.95
LG/J m 75.2 29.5   12 8.51 0.392 11.0, 114.0 -0.28
LP/J f 21.1 10.3   10 3.27 0.49 4.0, 33.0 -1.31
LP/J m 24.6 15.6   10 4.92 0.632 -1.33
MA/MyJ f 148.0 37.3   8 13.2 0.252 84.0, 196.0 1.69
MA/MyJ m 179.0 39.7   9 13.2 0.222 104.0, 227.0 1.88
MRL/MpJ f 47.3 25.3   14 6.77 0.535 12.0, 90.0 -0.69
MRL/MpJ m 45.1 17.7   14 4.74 0.393 17.0, 78.0 -0.91
NOD/ShiLtJ f 134.0 46.9   18 11.1 0.35 75.0, 219.0 1.36
NOD/ShiLtJ m 144.0 28.9   17 7.02 0.2 77.0, 199.0 1.15
NON/ShiLtJ f 135.0 44.8   16 11.2 0.333 90.0, 273.0 1.38
NON/ShiLtJ m 137.0 53.3   16 13.3 0.389 72.0, 286.0 1.0
NOR/LtJ f 127.0 42.9   10 13.6 0.337 62.0, 181.0 1.19
NOR/LtJ m 135.0 19.2   10 6.07 0.142 102.0, 159.0 0.96
NZB/BlNJ f 26.9 20.0   10 6.31 0.742 -1.17
NZB/BlNJ m 28.5 16.9   14 4.51 0.592 2.0, 55.0 -1.25
NZO/HlLtJ f 43.4 15.7   11 4.74 0.363 29.0, 83.0 -0.78
NZO/HlLtJ m 51.3 24.9   11 7.51 0.486 22.0, 103.0 -0.78
NZW/LacJ f 54.7 15.8   13 4.38 0.289 22.0, 77.0 -0.52
PERA/EiJ f 90.2 30.4   12 8.77 0.337 37.0, 132.0 0.32
PERA/EiJ m 83.1 46.4   8 16.4 0.558 28.0, 154.0 -0.12
P/J f 86.5 10.6   2   7.5 0.123 79.0, 94.0 0.23
P/J m 174.0 33.5   3 19.4 0.192 140.0, 207.0 1.77
PL/J f 135.0 24.7   18 5.82 0.183 98.0, 172.0 1.38
PL/J m 115.0 26.3   18 6.19 0.228 65.0, 169.0 0.55
PWD/PhJ f 32.3 30.1   10 9.53 0.933 1.0, 89.0 -1.04
PWD/PhJ m 61.0 33.6   10 10.6 0.552 8.0, 110.0 -0.58
RIIIS/J f 109.0 34.6   12 9.98 0.317 73.0, 181.0 0.77
RIIIS/J m 121.0 20.1   15 5.19 0.166 94.0, 164.0 0.67
SEA/GnJ f 97.0 36.2   6 14.8 0.374 49.0, 155.0 0.48
SEA/GnJ m 157.0 55.2   3 31.9 0.352 94.0, 197.0 1.42
SJL/J f 110.0 34.6   16 8.65 0.315 50.0, 177.0 0.79
SJL/J m 148.0 39.8   16 9.96 0.269 76.0, 211.0 1.23
SM/J f 49.4 47.4   14 12.7 0.961 -0.64
SM/J m 68.2 38.2   14 10.2 0.56 19.0, 138.0 -0.43
SWR/J f 166.0 47.6   15 12.3 0.287 102.0, 270.0 2.11
SWR/J m 178.0 32.2   17 7.82 0.181 120.0, 246.0 1.86
WSB/EiJ f 52.7 24.9   10 7.87 0.472 19.0, 115.0 -0.56
WSB/EiJ m 70.2 36.7   10 11.6 0.523 24.0, 131.0 -0.39


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ f 1.0 8.324 17.3384 0.0
129S1/SvImJ m 8.0714 8.324 24.4098 0.0
A/J f 8.0 8.324 24.3384 0.0
A/J m 11.4286 8.324 27.767 0.0
AKR/J f 54.375 7.7864 69.6582 39.0918
AKR/J m 77.6429 8.324 93.9813 61.3045
BALB/cByJ f 52.6923 8.6382 69.6475 35.7372
BALB/cByJ m 59.7143 8.324 76.0527 43.3759
BTBR T+ Itpr3tf/J f 46.9375 7.7864 62.2207 31.6543
BTBR T+ Itpr3tf/J m 55.5 7.7864 70.7832 40.2168
BUB/BnJ f 49.0 8.9909 66.6475 31.3525
BUB/BnJ m 69.2857 11.7719 92.3917 46.1797
C3H/HeJ f 83.4667 8.0417 99.2511 67.6823
C3H/HeJ m 93.4667 8.0417 109.2511 77.6823
C57BL/6J f 69.4074 5.9939 81.1724 57.6424
C57BL/6J m 95.125 7.7864 110.4082 79.8418
C57BR/cdJ f 93.8 8.0417 109.5844 78.0156
C57BR/cdJ m 116.0714 8.324 132.4098 99.733
C58/J f 63.375 7.7864 78.6582 48.0918
C58/J m 83.375 7.7864 98.6582 68.0918
CBA/J f 57.0667 8.0417 72.8511 41.2823
CBA/J m 54.1333 8.0417 69.9177 38.3489
CE/J f 78.0 15.5727 108.5663 47.4337
CE/J m 84.375 11.0116 105.9887 62.7613
CZECHII/EiJ f 28.5 9.8491 47.8319 9.1681
CZECHII/EiJ m 40.125 11.0116 61.7387 18.5113
DBA/2J f 78.0 8.324 94.3384 61.6616
DBA/2J m 79.5 8.324 95.8384 63.1616
FVB/NJ f 153.6429 8.324 169.9813 137.3045
FVB/NJ m 173.0 8.324 189.3384 156.6616
I/LnJ f 83.25 15.5727 113.8163 52.6837
I/LnJ m 87.5 11.0116 109.1137 65.8863
KK/HlJ f 48.5 8.9909 66.1475 30.8525
KK/HlJ m 44.1176 7.5539 58.9445 29.2908
LG/J f 116.8333 8.9909 134.4808 99.1858
LG/J m 75.25 8.9909 92.8975 57.6025
LP/J f 21.1 9.8491 40.4319 1.7681
LP/J m 24.6 9.8491 43.9319 5.2681
MA/MyJ f 148.25 11.0116 169.8637 126.6363
MA/MyJ m 178.6667 10.3818 199.0442 158.2891
MRL/MpJ f 47.2857 8.324 63.6241 30.9473
MRL/MpJ m 45.0714 8.324 61.4098 28.733
NOD/ShiLtJ f 133.8889 7.3411 148.298 119.4798
NOD/ShiLtJ m 144.4706 7.5539 159.2974 129.6437
NON/ShiLtJ f 134.5625 7.7864 149.8457 119.2793
NON/ShiLtJ m 137.125 7.7864 152.4082 121.8418
NOR/LtJ f 127.1 9.8491 146.4319 107.7681
NOR/LtJ m 135.0 9.8491 154.3319 115.6681
NZB/BlNJ f 26.9 9.8491 46.2319 7.5681
NZB/BlNJ m 28.5 8.324 44.8384 12.1616
NZO/HlLtJ f 43.3636 9.3907 61.7958 24.9314
NZO/HlLtJ m 51.2727 9.3907 69.7049 32.8405
PERA/EiJ f 90.1667 8.9909 107.8142 72.5192
PERA/EiJ m 83.125 11.0116 104.7387 61.5113
P/J f 86.5 22.0232 129.7273 43.2727
P/J m 174.3333 17.9818 209.6283 139.0384
PL/J f 135.1111 7.3411 149.5202 120.702
PL/J m 115.2778 7.3411 129.6869 100.8687
PWD/PhJ f 32.3 9.8491 51.6319 12.9681
PWD/PhJ m 61.0 9.8491 80.3319 41.6681
RIIIS/J f 109.0 8.9909 126.6475 91.3525
RIIIS/J m 121.2 8.0417 136.9844 105.4156
SEA/GnJ f 97.0 12.7151 121.9573 72.0427
SEA/GnJ m 157.0 17.9818 192.295 121.705
SJL/J f 109.875 7.7864 125.1582 94.5918
SJL/J m 147.875 7.7864 163.1582 132.5918
SM/J f 49.3571 8.324 65.6955 33.0187
SM/J m 68.2143 8.324 84.5527 51.8759
SWR/J f 166.0 8.0417 181.7844 150.2156
SWR/J m 178.4118 7.5539 193.2386 163.5849
WSB/EiJ f 52.7 9.8491 72.0319 33.3681
WSB/EiJ m 70.2 9.8491 89.5319 50.8681


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ both 4.5357 5.8859 16.0887 0.0
A/J both 9.7143 5.8859 21.2673 0.0
AKR/J both 66.0089 5.699 77.1951 54.8228
BALB/cByJ both 56.2033 5.9981 67.9764 44.4302
BTBR T+ Itpr3tf/J both 51.2188 5.5058 62.0256 40.4119
BUB/BnJ both 59.1429 7.4063 73.6801 44.6057
C3H/HeJ both 88.4667 5.6864 99.6279 77.3054
C57BL/6J both 82.2662 4.9131 91.9097 72.6227
C57BR/cdJ both 104.9357 5.787 116.2945 93.5769
C58/J both 73.375 5.5058 84.1818 62.5682
CBA/J both 55.6 5.6864 66.7613 44.4387
CE/J both 81.1875 9.5363 99.9055 62.4695
CZECHII/EiJ both 34.3125 7.3868 48.8114 19.8136
DBA/2J both 78.75 5.8859 90.303 67.197
FVB/NJ both 163.3214 5.8859 174.8744 151.7684
I/LnJ both 85.375 9.5363 104.093 66.657
KK/HlJ both 46.3088 5.8715 57.8335 34.7842
LG/J both 96.0417 6.3575 108.5203 83.563
LP/J both 22.85 6.9643 36.5197 9.1803
MA/MyJ both 163.4583 7.567 178.3109 148.6058
MRL/MpJ both 46.1786 5.8859 57.7316 34.6256
NOD/ShiLtJ both 139.1797 5.2667 149.5173 128.8422
NON/ShiLtJ both 135.8437 5.5058 146.6506 125.0369
NOR/LtJ both 131.05 6.9643 144.7197 117.3803
NZB/BlNJ both 27.7 6.4477 40.3557 15.0443
NZO/HlLtJ both 47.3182 6.6402 60.3517 34.2846
PERA/EiJ both 86.6458 7.1079 100.5974 72.6943
P/J both 130.4167 14.2159 158.3198 102.5135
PL/J both 125.1944 5.1909 135.3832 115.0057
PWD/PhJ both 46.65 6.9643 60.3197 32.9803
RIIIS/J both 115.1 6.0313 126.9383 103.2617
SEA/GnJ both 127.0 11.0116 148.6137 105.3863
SJL/J both 128.875 5.5058 139.6818 118.0682
SM/J both 58.7857 5.8859 70.3387 47.2327
SWR/J both 172.2059 5.5166 183.0339 161.3779
WSB/EiJ both 61.45 6.9643 75.1197 47.7803




  GWAS USING LINEAR MIXED MODELS