Phenotype measure:   Lake1   pct_Retic

ID, description, units MPD:19986   pct_Retic   reticulocyte differential (Retic; percentage of total RBC)   [%]
Data set, strains Lake1   B6.A consomic w/par   23 strains     sex: both     age: 7wks
Procedure complete blood count
Ontology mappings

  STRAIN COMPARISON PLOT
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Lake1 - reticulocyte differential (Retic; percentage of total RBC)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means3.15   % 3.63   %
Median of the strain means3.16   % 3.42   %
SD of the strain means± 0.874 ± 0.982
Coefficient of variation (CV)0.277 0.270
Min–max range of strain means1.71   –   5.03   % 1.96   –   6.21   %
Mean sample size per strain7.9   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 19.7423 19.7423 14.2916 0.0002
strain 22 176.4163 8.0189 5.805 < 0.0001
sex:strain 22 126.2536 5.7388 4.1544 < 0.0001
Residuals 321 443.4258 1.3814


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 3.02 1.42   8 0.502 0.47 1.7, 6.3 -0.15
A/J m 2.95 0.417   8 0.148 0.142 2.2, 3.4 -0.7
B6.A-Chr1 f 3.96 0.857   8 0.303 0.216 2.6, 4.8 0.92
B6.A-Chr1 m 2.65 0.83   8 0.293 0.313 1.6, 3.7 -1.0
B6.A-Chr10 f 2.17 0.822   7 0.311 0.379 1.4, 3.7 -1.13
B6.A-Chr10 m 2.71 0.402   8 0.142 0.148 2.2, 3.4 -0.94
B6.A-Chr11 f 2.95 0.977   8 0.345 0.331 1.6, 4.2 -0.23
B6.A-Chr11 m 3.79 1.67   8 0.591 0.441 2.4, 7.7 0.16
B6.A-Chr12 f 2.31 0.579   8 0.205 0.25 1.9, 3.7 -0.97
B6.A-Chr12 m 3.73 0.585   8 0.207 0.157 3.1, 4.7 0.1
B6.A-Chr13 f 3.66 1.45   8 0.511 0.395 1.6, 6.5 0.58
B6.A-Chr13 m 3.42 0.769   8 0.272 0.224 2.4, 4.4 -0.22
B6.A-Chr14 f 3.3 1.54   8 0.546 0.468 2.0, 5.9 0.17
B6.A-Chr14 m 4.2 2.11   8 0.747 0.503 2.1, 7.1 0.58
B6.A-Chr15 f 3.48 0.894   9 0.298 0.257 2.4, 4.8 0.37
B6.A-Chr15 m 4.41 0.897   7 0.339 0.203 3.1, 5.4 0.79
B6.A-Chr16 f 2.56 0.558   8 0.197 0.218 1.4, 3.1 -0.68
B6.A-Chr16 m 2.6 0.583   8 0.206 0.224 2.0, 3.6 -1.05
B6.A-Chr17 f 2.6 0.989   8 0.349 0.38 1.5, 4.2 -0.63
B6.A-Chr17 m 3.24 0.37   8 0.131 0.114 2.8, 3.9 -0.4
B6.A-Chr18 f 3.36 0.672   8 0.238 0.2 2.2, 4.1 0.24
B6.A-Chr18 m 6.21 1.01   8 0.356 0.162 4.9, 8.0 2.62
B6.A-Chr19 f 2.51 0.649   8 0.229 0.258 1.7, 3.3 -0.74
B6.A-Chr19 m 3.4 0.529   7 0.2 0.156 2.8, 4.3 -0.24
B6.A-Chr2 f 3.39 0.426   7 0.161 0.126 2.7, 4.1 0.27
B6.A-Chr2 m 4.05 0.693   8 0.245 0.171 3.5, 5.5 0.42
B6.A-Chr3 f 4.42 2.14   8 0.757 0.484 2.1, 8.4 1.45
B6.A-Chr3 m 1.96 0.342   8 0.121 0.174 1.6, 2.5 -1.7
B6.A-Chr4 f 2.01 0.768   8 0.272 0.382 1.1, 3.0 -1.31
B6.A-Chr4 m 3.5 0.643   7 0.243 0.184 2.5, 4.5 -0.14
B6.A-Chr5 f 4.24 1.45   8 0.514 0.343 2.5, 6.3 1.24
B6.A-Chr5 m 5.51 1.33   8 0.47 0.241 4.0, 8.3 1.91
B6.A-Chr6 f 1.86 0.563   8 0.199 0.302 1.4, 3.0 -1.48
B6.A-Chr6 m 4.03 1.14   8 0.405 0.284 2.8, 6.3 0.4
B6.A-Chr7 f 3.04 0.441   8 0.156 0.145 2.4, 3.7 -0.13
B6.A-Chr7 m 2.59 0.27   8 0.0953 0.104 2.2, 2.9 -1.06
B6.A-Chr8 f 1.71 0.372   8 0.132 0.217 1.2, 2.4 -1.65
B6.A-Chr8 m 3.37 1.09   12 0.315 0.324 1.6, 5.0 -0.27
B6.A-Chr9 f 3.47 1.33   8 0.471 0.383 0.7, 4.8 0.36
B6.A-Chr9 m 4.44 2.81   8 0.994 0.633 2.9, 11.3 0.82
B6.A-ChrX f 4.33 1.08   8 0.38 0.249 2.5, 6.4 1.35
B6.A-ChrX m 2.99 0.837   8 0.296 0.28 2.1, 4.4 -0.65
B6.A-ChrY f 3.16 0.783   7 0.296 0.248 2.1, 4.2 0.01
B6.A-ChrY m 3.2 0.934   8 0.33 0.292 1.0, 3.8 -0.44
C57BL/6J f 5.03 3.22   8 1.14 0.641 3.2, 12.8 2.15
C57BL/6J m 4.6 1.47   8 0.521 0.32 3.3, 8.1 0.98


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 3.025 0.4155 3.8425 2.2075
A/J m 2.95 0.4155 3.7675 2.1325
B6.A-Chr1 f 3.9625 0.4155 4.78 3.145
B6.A-Chr1 m 2.65 0.4155 3.4675 1.8325
B6.A-Chr10 f 2.1714 0.4442 3.0454 1.2975
B6.A-Chr10 m 2.7125 0.4155 3.53 1.895
B6.A-Chr11 f 2.95 0.4155 3.7675 2.1325
B6.A-Chr11 m 3.7875 0.4155 4.605 2.97
B6.A-Chr12 f 2.3125 0.4155 3.13 1.495
B6.A-Chr12 m 3.725 0.4155 4.5425 2.9075
B6.A-Chr13 f 3.6625 0.4155 4.48 2.845
B6.A-Chr13 m 3.425 0.4155 4.2425 2.6075
B6.A-Chr14 f 3.3 0.4155 4.1175 2.4825
B6.A-Chr14 m 4.2 0.4155 5.0175 3.3825
B6.A-Chr15 f 3.4778 0.3918 4.2485 2.707
B6.A-Chr15 m 4.4143 0.4442 5.2883 3.5403
B6.A-Chr16 f 2.5625 0.4155 3.38 1.745
B6.A-Chr16 m 2.6 0.4155 3.4175 1.7825
B6.A-Chr17 f 2.6 0.4155 3.4175 1.7825
B6.A-Chr17 m 3.2375 0.4155 4.055 2.42
B6.A-Chr18 f 3.3625 0.4155 4.18 2.545
B6.A-Chr18 m 6.2125 0.4155 7.03 5.395
B6.A-Chr19 f 2.5125 0.4155 3.33 1.695
B6.A-Chr19 m 3.4 0.4442 4.274 2.526
B6.A-Chr2 f 3.3857 0.4442 4.2597 2.5117
B6.A-Chr2 m 4.05 0.4155 4.8675 3.2325
B6.A-Chr3 f 4.425 0.4155 5.2425 3.6075
B6.A-Chr3 m 1.9625 0.4155 2.78 1.145
B6.A-Chr4 f 2.0125 0.4155 2.83 1.195
B6.A-Chr4 m 3.5 0.4442 4.374 2.626
B6.A-Chr5 f 4.2375 0.4155 5.055 3.42
B6.A-Chr5 m 5.5125 0.4155 6.33 4.695
B6.A-Chr6 f 1.8625 0.4155 2.68 1.045
B6.A-Chr6 m 4.025 0.4155 4.8425 3.2075
B6.A-Chr7 f 3.0375 0.4155 3.855 2.22
B6.A-Chr7 m 2.5875 0.4155 3.405 1.77
B6.A-Chr8 f 1.7125 0.4155 2.53 0.895
B6.A-Chr8 m 3.3667 0.3393 4.0342 2.6992
B6.A-Chr9 f 3.475 0.4155 4.2925 2.6575
B6.A-Chr9 m 4.4375 0.4155 5.255 3.62
B6.A-ChrX f 4.325 0.4155 5.1425 3.5075
B6.A-ChrX m 2.9875 0.4155 3.805 2.17
B6.A-ChrY f 3.1571 0.4442 4.0311 2.2832
B6.A-ChrY m 3.2 0.4155 4.0175 2.3825
C57BL/6J f 5.025 0.4155 5.8425 4.2075
C57BL/6J m 4.6 0.4155 5.4175 3.7825


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 2.9875 0.2938 3.5656 2.4094
B6.A-Chr1 both 3.3063 0.2938 3.8843 2.7282
B6.A-Chr10 both 2.442 0.3041 3.0403 1.8436
B6.A-Chr11 both 3.3688 0.2938 3.9468 2.7907
B6.A-Chr12 both 3.0188 0.2938 3.5968 2.4407
B6.A-Chr13 both 3.5438 0.2938 4.1218 2.9657
B6.A-Chr14 both 3.75 0.2938 4.3281 3.1719
B6.A-Chr15 both 3.946 0.2962 4.5287 3.3634
B6.A-Chr16 both 2.5813 0.2938 3.1593 2.0032
B6.A-Chr17 both 2.9188 0.2938 3.4968 2.3407
B6.A-Chr18 both 4.7875 0.2938 5.3656 4.2094
B6.A-Chr19 both 2.9563 0.3041 3.5546 2.3579
B6.A-Chr2 both 3.7179 0.3041 4.3162 3.1195
B6.A-Chr3 both 3.1937 0.2938 3.7718 2.6157
B6.A-Chr4 both 2.7563 0.3041 3.3546 2.1579
B6.A-Chr5 both 4.875 0.2938 5.4531 4.2969
B6.A-Chr6 both 2.9438 0.2938 3.5218 2.3657
B6.A-Chr7 both 2.8125 0.2938 3.3906 2.2344
B6.A-Chr8 both 2.5396 0.2682 3.0673 2.0119
B6.A-Chr9 both 3.9563 0.2938 4.5343 3.3782
B6.A-ChrX both 3.6563 0.2938 4.2343 3.0782
B6.A-ChrY both 3.1786 0.3041 3.7769 2.5802
C57BL/6J both 4.8125 0.2938 5.3906 4.2344




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA