Phenotype measure:   Lake1   NEUT

ID, description, units MPD:19980   NEUT   neutrophil count (NEUT; units per volume x 103)   [n/µL]
Data set, strains Lake1   B6.A consomic w/par   23 strains     sex: both     age: 7wks
Procedure complete blood count
Ontology mappings

  STRAIN COMPARISON PLOT
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Lake1 - neutrophil count (NEUT; units per volume x 103)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means0.605   n/µL 0.756   n/µL
Median of the strain means0.573   n/µL 0.681   n/µL
SD of the strain means± 0.108 ± 0.199
Coefficient of variation (CV)0.178 0.263
Min–max range of strain means0.468   –   0.913   n/µL 0.462   –   1.14   n/µL
Mean sample size per strain7.9   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 1.9871 1.9871 43.0722 < 0.0001
strain 22 5.9907 0.2723 5.9025 < 0.0001
sex:strain 22 2.8846 0.1311 2.8422 < 0.0001
Residuals 321 14.8089 0.0461


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 0.773 0.183   8 0.0647 0.237 0.426, 1.04 1.56
A/J m 0.697 0.16   8 0.0566 0.23 0.489, 0.941 -0.3
B6.A-Chr1 f 0.913 0.225   8 0.0794 0.246 0.66, 1.28 2.86
B6.A-Chr1 m 1.02 0.208   8 0.0737 0.205 0.758, 1.28 1.33
B6.A-Chr10 f 0.533 0.149   7 0.0565 0.28 0.358, 0.81 -0.67
B6.A-Chr10 m 0.573 0.153   8 0.0541 0.267 0.355, 0.785 -0.92
B6.A-Chr11 f 0.496 0.0901   8 0.0319 0.181 0.383, 0.65 -1.01
B6.A-Chr11 m 0.607 0.181   8 0.064 0.298 0.355, 0.849 -0.75
B6.A-Chr12 f 0.468 0.048   8 0.017 0.102 0.414, 0.542 -1.27
B6.A-Chr12 m 0.729 0.26   8 0.092 0.357 0.463, 1.18 -0.14
B6.A-Chr13 f 0.495 0.235   8 0.083 0.475 0.317, 1.05 -1.02
B6.A-Chr13 m 1.14 0.622   8 0.22 0.544 0.41, 2.34 1.93
B6.A-Chr14 f 0.564 0.113   8 0.04 0.201 0.422, 0.77 -0.38
B6.A-Chr14 m 0.562 0.111   8 0.0392 0.197 0.447, 0.75 -0.98
B6.A-Chr15 f 0.583 0.156   9 0.052 0.267 0.389, 0.831 -0.2
B6.A-Chr15 m 0.893 0.204   7 0.0772 0.229 0.648, 1.3 0.69
B6.A-Chr16 f 0.551 0.0756   8 0.0267 0.137 0.419, 0.661 -0.5
B6.A-Chr16 m 0.677 0.166   8 0.0586 0.245 0.561, 1.07 -0.4
B6.A-Chr17 f 0.684 0.16   8 0.0566 0.234 0.432, 0.94 0.73
B6.A-Chr17 m 1.1 0.205   8 0.0726 0.187 0.723, 1.37 1.73
B6.A-Chr18 f 0.589 0.141   8 0.0499 0.24 0.423, 0.872 -0.15
B6.A-Chr18 m 0.655 0.121   8 0.0429 0.185 0.5, 0.806 -0.51
B6.A-Chr19 f 0.536 0.122   8 0.043 0.227 0.281, 0.668 -0.64
B6.A-Chr19 m 0.768 0.197   7 0.0743 0.256 0.537, 1.01 0.06
B6.A-Chr2 f 0.765 0.189   7 0.0713 0.247 0.539, 1.05 1.48
B6.A-Chr2 m 0.906 0.176   8 0.0621 0.194 0.601, 1.14 0.75
B6.A-Chr3 f 0.621 0.256   8 0.0906 0.412 0.359, 1.2 0.15
B6.A-Chr3 m 0.999 0.311   8 0.11 0.311 0.621, 1.5 1.22
B6.A-Chr4 f 0.65 0.076   8 0.0269 0.117 0.539, 0.756 0.42
B6.A-Chr4 m 1.06 0.581   7 0.219 0.547 0.632, 2.26 1.53
B6.A-Chr5 f 0.566 0.12   8 0.0424 0.212 0.435, 0.775 -0.36
B6.A-Chr5 m 0.563 0.134   8 0.0473 0.237 0.403, 0.766 -0.97
B6.A-Chr6 f 0.69 0.196   8 0.0693 0.284 0.378, 1.02 0.79
B6.A-Chr6 m 0.677 0.288   8 0.102 0.426 0.415, 1.21 -0.4
B6.A-Chr7 f 0.684 0.15   8 0.053 0.219 0.456, 0.99 0.73
B6.A-Chr7 m 0.839 0.21   8 0.0743 0.25 0.666, 1.33 0.42
B6.A-Chr8 f 0.625 0.224   8 0.0792 0.358 0.371, 0.896 0.18
B6.A-Chr8 m 0.681 0.21   12 0.0606 0.308 0.506, 1.13 -0.38
B6.A-Chr9 f 0.573 0.0794   8 0.0281 0.139 0.479, 0.687 -0.3
B6.A-Chr9 m 0.462 0.167   8 0.0589 0.361 0.0778, 0.62 -1.48
B6.A-ChrX f 0.526 0.0891   8 0.0315 0.169 0.373, 0.634 -0.73
B6.A-ChrX m 0.604 0.245   8 0.0866 0.406 0.358, 1.04 -0.77
B6.A-ChrY f 0.486 0.183   7 0.0693 0.377 0.24, 0.796 -1.1
B6.A-ChrY m 0.533 0.106   8 0.0374 0.199 0.358, 0.646 -1.12
C57BL/6J f 0.546 0.279   8 0.0988 0.512 0.378, 1.22 -0.55
C57BL/6J m 0.647 0.127   8 0.0448 0.196 0.486, 0.851 -0.55


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 0.7727 0.0759 0.9222 0.6233
A/J m 0.6974 0.0759 0.8468 0.548
B6.A-Chr1 f 0.913 0.0759 1.0624 0.7636
B6.A-Chr1 m 1.0186 0.0759 1.168 0.8692
B6.A-Chr10 f 0.533 0.0812 0.6927 0.3733
B6.A-Chr10 m 0.5733 0.0759 0.7227 0.4238
B6.A-Chr11 f 0.4964 0.0759 0.6458 0.347
B6.A-Chr11 m 0.6071 0.0759 0.7565 0.4577
B6.A-Chr12 f 0.468 0.0759 0.6174 0.3186
B6.A-Chr12 m 0.7294 0.0759 0.8788 0.58
B6.A-Chr13 f 0.4946 0.0759 0.644 0.3452
B6.A-Chr13 m 1.1446 0.0759 1.294 0.9952
B6.A-Chr14 f 0.564 0.0759 0.7134 0.4146
B6.A-Chr14 m 0.562 0.0759 0.7114 0.4126
B6.A-Chr15 f 0.5832 0.0716 0.7241 0.4424
B6.A-Chr15 m 0.8926 0.0812 1.0523 0.7329
B6.A-Chr16 f 0.551 0.0759 0.7004 0.4016
B6.A-Chr16 m 0.6769 0.0759 0.8263 0.5275
B6.A-Chr17 f 0.6836 0.0759 0.833 0.5342
B6.A-Chr17 m 1.0977 0.0759 1.2472 0.9483
B6.A-Chr18 f 0.5889 0.0759 0.7383 0.4395
B6.A-Chr18 m 0.6553 0.0759 0.8047 0.5058
B6.A-Chr19 f 0.5361 0.0759 0.6855 0.3867
B6.A-Chr19 m 0.7683 0.0812 0.928 0.6086
B6.A-Chr2 f 0.7646 0.0812 0.9243 0.6049
B6.A-Chr2 m 0.9063 0.0759 1.0557 0.7568
B6.A-Chr3 f 0.6213 0.0759 0.7707 0.4718
B6.A-Chr3 m 0.9986 0.0759 1.148 0.8492
B6.A-Chr4 f 0.6504 0.0759 0.7998 0.501
B6.A-Chr4 m 1.0617 0.0812 1.2214 0.902
B6.A-Chr5 f 0.5659 0.0759 0.7153 0.4165
B6.A-Chr5 m 0.5631 0.0759 0.7125 0.4137
B6.A-Chr6 f 0.6896 0.0759 0.839 0.5402
B6.A-Chr6 m 0.6774 0.0759 0.8268 0.528
B6.A-Chr7 f 0.6839 0.0759 0.8333 0.5345
B6.A-Chr7 m 0.8391 0.0759 0.9885 0.6897
B6.A-Chr8 f 0.625 0.0759 0.7744 0.4756
B6.A-Chr8 m 0.6813 0.062 0.8033 0.5593
B6.A-Chr9 f 0.5734 0.0759 0.7228 0.424
B6.A-Chr9 m 0.4622 0.0759 0.6116 0.3128
B6.A-ChrX f 0.5261 0.0759 0.6755 0.3767
B6.A-ChrX m 0.6035 0.0759 0.7529 0.4541
B6.A-ChrY f 0.4859 0.0812 0.6456 0.3261
B6.A-ChrY m 0.533 0.0759 0.6824 0.3836
C57BL/6J f 0.5459 0.0759 0.6953 0.3965
C57BL/6J m 0.6469 0.0759 0.7963 0.4975


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 0.7351 0.0537 0.8407 0.6294
B6.A-Chr1 both 0.9658 0.0537 1.0715 0.8602
B6.A-Chr10 both 0.5531 0.0556 0.6625 0.4438
B6.A-Chr11 both 0.5517 0.0537 0.6574 0.4461
B6.A-Chr12 both 0.5987 0.0537 0.7043 0.493
B6.A-Chr13 both 0.8196 0.0537 0.9253 0.714
B6.A-Chr14 both 0.563 0.0537 0.6686 0.4574
B6.A-Chr15 both 0.7379 0.0541 0.8444 0.6314
B6.A-Chr16 both 0.6139 0.0537 0.7196 0.5083
B6.A-Chr17 both 0.8907 0.0537 0.9963 0.785
B6.A-Chr18 both 0.6221 0.0537 0.7277 0.5164
B6.A-Chr19 both 0.6522 0.0556 0.7616 0.5429
B6.A-Chr2 both 0.8354 0.0556 0.9448 0.7261
B6.A-Chr3 both 0.8099 0.0537 0.9156 0.7043
B6.A-Chr4 both 0.856 0.0556 0.9654 0.7467
B6.A-Chr5 both 0.5645 0.0537 0.6701 0.4589
B6.A-Chr6 both 0.6835 0.0537 0.7891 0.5779
B6.A-Chr7 both 0.7615 0.0537 0.8671 0.6559
B6.A-Chr8 both 0.6532 0.049 0.7496 0.5567
B6.A-Chr9 both 0.5178 0.0537 0.6234 0.4122
B6.A-ChrX both 0.5648 0.0537 0.6705 0.4592
B6.A-ChrY both 0.5094 0.0556 0.6188 0.4001
C57BL/6J both 0.5964 0.0537 0.702 0.4907




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA