Project measure / variable:   Lake1   HCT

ID, description, units MPD:19912   HCT   hematocrit (HCT)   [%]  
Data set, strains Lake1   B6.A consomic w/par   23 strains     sex: both     age: 7wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Lake1 - hematocrit (HCT)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means42.5   % 43.4   %
Median of the strain means42.6   % 43.2   %
SD of the strain means± 1.15 ± 1.06
Coefficient of variation (CV)0.0270 0.0244
Min–max range of strain means40.4   –   44.2   % 41.8   –   45.7   %
Mean sample size per strain7.9   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 69.6359 69.6359 12.0625 0.0006
strain 22 261.7582 11.8981 2.061 0.0039
sex:strain 22 159.3146 7.2416 1.2544 0.2005
Residuals 321 1853.1104 5.7729


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 40.5 2.85   8 1.01 0.0703 33.9, 42.9 -1.72
A/J m 42.8 1.21   8 0.427 0.0282 41.4, 45.2 -0.54
B6.A-Chr1 f 42.3 1.46   8 0.515 0.0344 40.6, 43.9 -0.15
B6.A-Chr1 m 42.3 1.77   8 0.625 0.0418 40.0, 45.6 -1.02
B6.A-Chr10 f 43.3 1.06   7 0.401 0.0245 41.3, 44.4 0.72
B6.A-Chr10 m 44.1 2.05   8 0.723 0.0464 40.1, 46.6 0.69
B6.A-Chr11 f 43.6 2.28   8 0.806 0.0523 40.2, 48.1 0.98
B6.A-Chr11 m 43.0 3.84   8 1.36 0.0892 35.7, 49.1 -0.35
B6.A-Chr12 f 44.2 2.46   8 0.868 0.0555 40.8, 47.6 1.51
B6.A-Chr12 m 43.2 2.5   8 0.886 0.0579 39.7, 47.0 -0.16
B6.A-Chr13 f 42.9 3.29   8 1.16 0.0768 35.6, 45.6 0.37
B6.A-Chr13 m 43.4 2.91   8 1.03 0.067 39.0, 47.0 0.02
B6.A-Chr14 f 42.9 2.15   8 0.758 0.05 39.9, 45.3 0.37
B6.A-Chr14 m 41.8 2.2   8 0.778 0.0527 37.3, 44.6 -1.49
B6.A-Chr15 f 40.5 4.09   9 1.36 0.101 29.8, 43.1 -1.72
B6.A-Chr15 m 42.4 1.38   7 0.523 0.0326 39.9, 44.3 -0.92
B6.A-Chr16 f 42.1 1.3   8 0.459 0.0308 40.6, 44.2 -0.33
B6.A-Chr16 m 44.3 1.3   8 0.461 0.0294 42.6, 46.2 0.88
B6.A-Chr17 f 43.2 1.35   8 0.477 0.0313 41.3, 44.9 0.63
B6.A-Chr17 m 42.9 1.32   8 0.466 0.0307 41.4, 45.4 -0.45
B6.A-Chr18 f 43.1 1.41   8 0.498 0.0326 41.5, 45.7 0.55
B6.A-Chr18 m 43.6 1.68   8 0.594 0.0386 41.1, 46.8 0.21
B6.A-Chr19 f 44.1 2.3   8 0.812 0.0521 40.0, 46.9 1.42
B6.A-Chr19 m 45.7 2.15   7 0.813 0.0471 43.4, 49.7 2.2
B6.A-Chr2 f 40.9 1.34   7 0.507 0.0328 39.1, 43.0 -1.37
B6.A-Chr2 m 42.0 1.08   8 0.381 0.0257 40.4, 43.0 -1.3
B6.A-Chr3 f 42.0 2.23   8 0.788 0.0531 38.4, 44.3 -0.41
B6.A-Chr3 m 42.4 1.3   8 0.46 0.0307 40.9, 44.6 -0.92
B6.A-Chr4 f 41.5 2.38   8 0.843 0.0574 37.9, 44.9 -0.85
B6.A-Chr4 m 44.8 1.55   7 0.587 0.0347 42.2, 46.8 1.35
B6.A-Chr5 f 42.1 1.9   8 0.672 0.0452 38.1, 44.1 -0.33
B6.A-Chr5 m 42.1 2.21   8 0.78 0.0524 39.8, 46.5 -1.2
B6.A-Chr6 f 42.6 0.947   8 0.335 0.0222 41.5, 44.1 0.11
B6.A-Chr6 m 42.3 3.97   8 1.4 0.0939 37.0, 48.5 -1.02
B6.A-Chr7 f 43.5 1.33   8 0.47 0.0306 41.8, 45.5 0.9
B6.A-Chr7 m 43.8 1.14   8 0.403 0.026 41.5, 45.0 0.4
B6.A-Chr8 f 42.1 1.02   8 0.361 0.0243 40.0, 43.5 -0.33
B6.A-Chr8 m 43.1 1.59   12 0.459 0.0369 41.1, 46.8 -0.26
B6.A-Chr9 f 42.0 1.41   8 0.5 0.0337 38.9, 43.6 -0.41
B6.A-Chr9 m 44.3 1.43   8 0.507 0.0324 42.3, 46.3 0.88
B6.A-ChrX f 43.9 1.59   8 0.564 0.0363 41.5, 46.3 1.24
B6.A-ChrX m 44.0 2.12   8 0.75 0.0482 40.3, 46.5 0.59
B6.A-ChrY f 40.4 9.22   7 3.49 0.228 20.3, 46.7 -1.81
B6.A-ChrY m 44.8 1.46   8 0.516 0.0326 42.9, 47.2 1.35
C57BL/6J f 43.2 1.45   8 0.511 0.0335 40.9, 45.7 0.63
C57BL/6J m 44.5 1.86   8 0.658 0.0418 41.9, 48.1 1.06


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 40.475 0.8495 42.1463 38.8037
A/J m 42.7875 0.8495 44.4588 41.1162
B6.A-Chr1 f 42.2875 0.8495 43.9588 40.6162
B6.A-Chr1 m 42.3125 0.8495 43.9838 40.6412
B6.A-Chr10 f 43.2857 0.9081 45.0724 41.4991
B6.A-Chr10 m 44.0875 0.8495 45.7588 42.4162
B6.A-Chr11 f 43.6 0.8495 45.2713 41.9287
B6.A-Chr11 m 43.025 0.8495 44.6963 41.3537
B6.A-Chr12 f 44.225 0.8495 45.8963 42.5537
B6.A-Chr12 m 43.225 0.8495 44.8963 41.5537
B6.A-Chr13 f 42.8875 0.8495 44.5588 41.2162
B6.A-Chr13 m 43.4 0.8495 45.0713 41.7287
B6.A-Chr14 f 42.9125 0.8495 44.5838 41.2412
B6.A-Chr14 m 41.7625 0.8495 43.4338 40.0912
B6.A-Chr15 f 40.4556 0.8009 42.0312 38.8799
B6.A-Chr15 m 42.4 0.9081 44.1866 40.6134
B6.A-Chr16 f 42.1 0.8495 43.7713 40.4287
B6.A-Chr16 m 44.3125 0.8495 45.9838 42.6412
B6.A-Chr17 f 43.2 0.8495 44.8713 41.5287
B6.A-Chr17 m 42.8625 0.8495 44.5338 41.1912
B6.A-Chr18 f 43.15 0.8495 44.8213 41.4787
B6.A-Chr18 m 43.575 0.8495 45.2463 41.9037
B6.A-Chr19 f 44.1125 0.8495 45.7838 42.4412
B6.A-Chr19 m 45.6714 0.9081 47.4581 43.8848
B6.A-Chr2 f 40.8571 0.9081 42.6438 39.0705
B6.A-Chr2 m 42.0125 0.8495 43.6838 40.3412
B6.A-Chr3 f 41.9625 0.8495 43.6338 40.2912
B6.A-Chr3 m 42.375 0.8495 44.0463 40.7037
B6.A-Chr4 f 41.55 0.8495 43.2213 39.8787
B6.A-Chr4 m 44.7571 0.9081 46.5438 42.9705
B6.A-Chr5 f 42.0625 0.8495 43.7338 40.3912
B6.A-Chr5 m 42.075 0.8495 43.7463 40.4037
B6.A-Chr6 f 42.6375 0.8495 44.3088 40.9662
B6.A-Chr6 m 42.3125 0.8495 43.9838 40.6412
B6.A-Chr7 f 43.45 0.8495 45.1213 41.7787
B6.A-Chr7 m 43.85 0.8495 45.5213 42.1787
B6.A-Chr8 f 42.075 0.8495 43.7463 40.4037
B6.A-Chr8 m 43.05 0.6936 44.4146 41.6854
B6.A-Chr9 f 41.975 0.8495 43.6463 40.3037
B6.A-Chr9 m 44.3 0.8495 45.9713 42.6287
B6.A-ChrX f 43.925 0.8495 45.5963 42.2537
B6.A-ChrX m 43.9875 0.8495 45.6588 42.3162
B6.A-ChrY f 40.4143 0.9081 42.2009 38.6276
B6.A-ChrY m 44.7875 0.8495 46.4588 43.1162
C57BL/6J f 43.2125 0.8495 44.8838 41.5412
C57BL/6J m 44.525 0.8495 46.1963 42.8537


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 41.6312 0.6007 42.813 40.4495
B6.A-Chr1 both 42.3 0.6007 43.4818 41.1182
B6.A-Chr10 both 43.6866 0.6218 44.9098 42.4634
B6.A-Chr11 both 43.3125 0.6007 44.4943 42.1307
B6.A-Chr12 both 43.725 0.6007 44.9068 42.5432
B6.A-Chr13 both 43.1437 0.6007 44.3255 41.962
B6.A-Chr14 both 42.3375 0.6007 43.5193 41.1557
B6.A-Chr15 both 41.4278 0.6054 42.6189 40.2367
B6.A-Chr16 both 43.2062 0.6007 44.388 42.0245
B6.A-Chr17 both 43.0312 0.6007 44.213 41.8495
B6.A-Chr18 both 43.3625 0.6007 44.5443 42.1807
B6.A-Chr19 both 44.892 0.6218 46.1152 43.6687
B6.A-Chr2 both 41.4348 0.6218 42.6581 40.2116
B6.A-Chr3 both 42.1687 0.6007 43.3505 40.987
B6.A-Chr4 both 43.1536 0.6218 44.3768 41.9303
B6.A-Chr5 both 42.0687 0.6007 43.2505 40.887
B6.A-Chr6 both 42.475 0.6007 43.6568 41.2932
B6.A-Chr7 both 43.65 0.6007 44.8318 42.4682
B6.A-Chr8 both 42.5625 0.5483 43.6413 41.4837
B6.A-Chr9 both 43.1375 0.6007 44.3193 41.9557
B6.A-ChrX both 43.9562 0.6007 45.138 42.7745
B6.A-ChrY both 42.6009 0.6218 43.8241 41.3777
C57BL/6J both 43.8687 0.6007 45.0505 42.687




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA