Phenotype measure:   Lake1   reticulocytes

ID, description, units MPD:19909   reticulocytes   reticulocyte count (Retic; units per volume x 109)   [n/L]
Data set, strains Lake1   B6.A consomic w/par   23 strains     sex: both     age: 7wks
Procedure complete blood count
Ontology mappings

  STRAIN COMPARISON PLOT
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Lake1 - reticulocyte count (Retic; units per volume x 109)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means291   n/L 340   n/L
Median of the strain means290   n/L 326   n/L
SD of the strain means± 77.3 ± 91.1
Coefficient of variation (CV)0.265 0.268
Min–max range of strain means160   –   449   n/L 182   –   591   n/L
Mean sample size per strain7.9   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 210072.3871 210072.3871 19.9606 < 0.0001
strain 22 1478054.4183 67184.2917 6.3837 < 0.0001
sex:strain 22 1024469.9775 46566.8172 4.4247 < 0.0001
Residuals 321 3378323.6355 10524.3727


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 266.0 91.1   8 32.2 0.343 157.0, 455.0 -0.33
A/J m 280.0 40.1   8 14.2 0.144 208.0, 328.0 -0.66
B6.A-Chr1 f 358.0 79.5   8 28.1 0.222 232.0, 447.0 0.86
B6.A-Chr1 m 242.0 77.5   8 27.4 0.321 140.0, 340.0 -1.08
B6.A-Chr10 f 209.0 79.8   7 30.1 0.381 137.0, 363.0 -1.07
B6.A-Chr10 m 266.0 42.4   8 15.0 0.159 212.0, 338.0 -0.82
B6.A-Chr11 f 279.0 88.0   8 31.1 0.316 151.0, 410.0 -0.16
B6.A-Chr11 m 339.0 114.0   8 40.2 0.335 229.0, 578.0 -0.02
B6.A-Chr12 f 222.0 65.6   8 23.2 0.296 179.0, 377.0 -0.9
B6.A-Chr12 m 343.0 45.0   8 15.9 0.131 287.0, 409.0 0.03
B6.A-Chr13 f 340.0 111.0   8 39.4 0.328 162.0, 522.0 0.63
B6.A-Chr13 m 326.0 82.9   8 29.3 0.255 206.0, 444.0 -0.16
B6.A-Chr14 f 312.0 144.0   8 50.9 0.461 197.0, 568.0 0.27
B6.A-Chr14 m 382.0 178.0   8 62.9 0.466 203.0, 588.0 0.46
B6.A-Chr15 f 313.0 80.1   9 26.7 0.256 229.0, 442.0 0.28
B6.A-Chr15 m 409.0 72.6   7 27.4 0.177 294.0, 477.0 0.75
B6.A-Chr16 f 235.0 48.7   8 17.2 0.208 131.0, 277.0 -0.73
B6.A-Chr16 m 250.0 58.5   8 20.7 0.233 186.0, 354.0 -0.99
B6.A-Chr17 f 244.0 94.6   8 33.5 0.388 146.0, 390.0 -0.61
B6.A-Chr17 m 295.0 32.6   8 11.5 0.111 253.0, 343.0 -0.5
B6.A-Chr18 f 324.0 61.6   8 21.8 0.19 211.0, 386.0 0.42
B6.A-Chr18 m 591.0 106.0   8 37.6 0.18 452.0, 759.0 2.75
B6.A-Chr19 f 237.0 58.8   8 20.8 0.248 162.0, 319.0 -0.7
B6.A-Chr19 m 326.0 54.0   7 20.4 0.166 254.0, 409.0 -0.16
B6.A-Chr2 f 303.0 35.7   7 13.5 0.118 241.0, 360.0 0.15
B6.A-Chr2 m 384.0 59.5   8 21.0 0.155 330.0, 502.0 0.48
B6.A-Chr3 f 402.0 173.0   8 61.0 0.429 212.0, 699.0 1.43
B6.A-Chr3 m 182.0 29.5   8 10.4 0.162 149.0, 227.0 -1.74
B6.A-Chr4 f 186.0 76.5   8 27.0 0.411 89.0, 294.0 -1.36
B6.A-Chr4 m 330.0 55.2   7 20.9 0.167 246.0, 418.0 -0.11
B6.A-Chr5 f 398.0 138.0   8 48.8 0.347 243.0, 624.0 1.38
B6.A-Chr5 m 505.0 110.0   8 38.7 0.217 360.0, 720.0 1.81
B6.A-Chr6 f 179.0 54.0   8 19.1 0.302 140.0, 291.0 -1.45
B6.A-Chr6 m 375.0 93.3   8 33.0 0.249 283.0, 527.0 0.38
B6.A-Chr7 f 290.0 41.7   8 14.7 0.144 230.0, 365.0 -0.02
B6.A-Chr7 m 249.0 25.9   8 9.15 0.104 211.0, 285.0 -1.0
B6.A-Chr8 f 160.0 36.0   8 12.7 0.225 110.0, 229.0 -1.7
B6.A-Chr8 m 318.0 104.0   12 29.9 0.325 152.0, 465.0 -0.25
B6.A-Chr9 f 321.0 120.0   8 42.3 0.373 70.7, 442.0 0.38
B6.A-Chr9 m 426.0 260.0   8 91.8 0.609 280.0, 1060.0 0.94
B6.A-ChrX f 398.0 89.8   8 31.7 0.226 237.0, 561.0 1.38
B6.A-ChrX m 280.0 74.6   8 26.4 0.266 192.0, 388.0 -0.66
B6.A-ChrY f 279.0 96.4   7 36.4 0.346 151.0, 419.0 -0.16
B6.A-ChrY m 306.0 85.4   8 30.2 0.279 105.0, 369.0 -0.38
C57BL/6J f 449.0 272.0   8 96.1 0.605 293.0, 1105.0 2.04
C57BL/6J m 427.0 120.0   8 42.3 0.28 322.0, 706.0 0.95


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 265.875 36.2705 337.2328 194.5172
A/J m 279.5 36.2705 350.8578 208.1422
B6.A-Chr1 f 358.375 36.2705 429.7328 287.0172
B6.A-Chr1 m 241.625 36.2705 312.9828 170.2672
B6.A-Chr10 f 209.1429 38.7748 285.4276 132.8581
B6.A-Chr10 m 266.375 36.2705 337.7328 195.0172
B6.A-Chr11 f 278.625 36.2705 349.9828 207.2672
B6.A-Chr11 m 338.875 36.2705 410.2328 267.5172
B6.A-Chr12 f 221.875 36.2705 293.2328 150.5172
B6.A-Chr12 m 342.625 36.2705 413.9828 271.2672
B6.A-Chr13 f 339.5 36.2705 410.8578 268.1422
B6.A-Chr13 m 325.5 36.2705 396.8578 254.1422
B6.A-Chr14 f 312.5 36.2705 383.8578 241.1422
B6.A-Chr14 m 381.75 36.2705 453.1078 310.3922
B6.A-Chr15 f 312.5556 34.1961 379.8324 245.2787
B6.A-Chr15 m 408.8571 38.7748 485.1419 332.5724
B6.A-Chr16 f 234.625 36.2705 305.9828 163.2672
B6.A-Chr16 m 250.5 36.2705 321.8578 179.1422
B6.A-Chr17 f 244.0 36.2705 315.3578 172.6422
B6.A-Chr17 m 294.75 36.2705 366.1078 223.3922
B6.A-Chr18 f 324.125 36.2705 395.4828 252.7672
B6.A-Chr18 m 591.0 36.2705 662.3578 519.6422
B6.A-Chr19 f 236.75 36.2705 308.1078 165.3922
B6.A-Chr19 m 326.4286 38.7748 402.7133 250.1438
B6.A-Chr2 f 303.2857 38.7748 379.5705 227.001
B6.A-Chr2 m 383.75 36.2705 455.1078 312.3922
B6.A-Chr3 f 402.0 36.2705 473.3578 330.6422
B6.A-Chr3 m 182.5 36.2705 253.8578 111.1422
B6.A-Chr4 f 185.875 36.2705 257.2328 114.5172
B6.A-Chr4 m 329.7143 38.7748 405.999 253.4295
B6.A-Chr5 f 397.75 36.2705 469.1078 326.3922
B6.A-Chr5 m 504.75 36.2705 576.1078 433.3922
B6.A-Chr6 f 178.875 36.2705 250.2328 107.5172
B6.A-Chr6 m 375.25 36.2705 446.6078 303.8922
B6.A-Chr7 f 289.5 36.2705 360.8578 218.1422
B6.A-Chr7 m 249.0 36.2705 320.3578 177.6422
B6.A-Chr8 f 159.5 36.2705 230.8578 88.1422
B6.A-Chr8 m 318.4167 29.6147 376.6801 260.1532
B6.A-Chr9 f 320.5875 36.2705 391.9453 249.2297
B6.A-Chr9 m 426.375 36.2705 497.7328 355.0172
B6.A-ChrX f 397.625 36.2705 468.9828 326.2672
B6.A-ChrX m 280.5 36.2705 351.8578 209.1422
B6.A-ChrY f 278.8571 38.7748 355.1419 202.5724
B6.A-ChrY m 306.375 36.2705 377.7328 235.0172
C57BL/6J f 449.25 36.2705 520.6078 377.8922
C57BL/6J m 426.75 36.2705 498.1078 355.3922


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 272.6875 25.6471 323.1451 222.2299
B6.A-Chr1 both 300.0 25.6471 350.4576 249.5424
B6.A-Chr10 both 237.7589 26.5473 289.9875 185.5303
B6.A-Chr11 both 308.75 25.6471 359.2076 258.2924
B6.A-Chr12 both 282.25 25.6471 332.7076 231.7924
B6.A-Chr13 both 332.5 25.6471 382.9576 282.0424
B6.A-Chr14 both 347.125 25.6471 397.5826 296.6674
B6.A-Chr15 both 360.7063 25.8498 411.5628 309.8499
B6.A-Chr16 both 242.5625 25.6471 293.0201 192.1049
B6.A-Chr17 both 269.375 25.6471 319.8326 218.9174
B6.A-Chr18 both 457.5625 25.6471 508.0201 407.1049
B6.A-Chr19 both 281.5893 26.5473 333.8179 229.3607
B6.A-Chr2 both 343.5179 26.5473 395.7465 291.2893
B6.A-Chr3 both 292.25 25.6471 342.7076 241.7924
B6.A-Chr4 both 257.7946 26.5473 310.0232 205.566
B6.A-Chr5 both 451.25 25.6471 501.7076 400.7924
B6.A-Chr6 both 277.0625 25.6471 327.5201 226.6049
B6.A-Chr7 both 269.25 25.6471 319.7076 218.7924
B6.A-Chr8 both 238.9583 23.4125 285.0196 192.897
B6.A-Chr9 both 373.4813 25.6471 423.9389 323.0236
B6.A-ChrX both 339.0625 25.6471 389.5201 288.6049
B6.A-ChrY both 292.6161 26.5473 344.8447 240.3875
C57BL/6J both 438.0 25.6471 488.4576 387.5424




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA