Project measure / variable:   Lake1   pct_BASO

ID, description, units MPD:19908   pct_BASO   basophil differential (BASO; percentage of total WBC)   [%]  
Data set, strains Lake1   B6.A consomic w/par   23 strains     sex: both     age: 7wks
Procedure complete blood count
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  STRAIN COMPARISON PLOT
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Lake1 - basophil differential (BASO; percentage of total WBC)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means0.411   % 0.392   %
Median of the strain means0.388   % 0.375   %
SD of the strain means± 0.141 ± 0.131
Coefficient of variation (CV)0.342 0.334
Min–max range of strain means0.138   –   0.650   % 0.113   –   0.750   %
Mean sample size per strain7.9   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 0.023 0.023 0.8197 0.366
strain 22 4.2334 0.1924 6.8478 < 0.0001
sex:strain 22 2.211 0.1005 3.5765 < 0.0001
Residuals 321 9.0203 0.0281


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
Select table page:
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 0.138 0.0744   8 0.0263 0.541 0.1, 0.3 -1.94
A/J m 0.113 0.0354   8 0.0125 0.314 0.1, 0.2 -2.13
B6.A-Chr1 f 0.6 0.293   8 0.104 0.488 0.2, 1.0 1.35
B6.A-Chr1 m 0.525 0.183   8 0.0648 0.349 0.2, 0.8 1.02
B6.A-Chr10 f 0.3 0.1   7 0.0378 0.333 0.2, 0.5 -0.79
B6.A-Chr10 m 0.412 0.136   8 0.0479 0.329 0.2, 0.5 0.15
B6.A-Chr11 f 0.65 0.177   8 0.0627 0.273 0.4, 0.9 1.7
B6.A-Chr11 m 0.35 0.2   8 0.0707 0.571 0.2, 0.8 -0.32
B6.A-Chr12 f 0.6 0.177   8 0.0627 0.295 0.2, 0.8 1.35
B6.A-Chr12 m 0.462 0.13   8 0.046 0.282 0.3, 0.7 0.54
B6.A-Chr13 f 0.325 0.128   8 0.0453 0.394 0.2, 0.6 -0.61
B6.A-Chr13 m 0.325 0.104   8 0.0366 0.318 0.2, 0.5 -0.51
B6.A-Chr14 f 0.387 0.173   8 0.0611 0.446 0.1, 0.6 -0.17
B6.A-Chr14 m 0.263 0.0744   8 0.0263 0.283 0.1, 0.3 -0.99
B6.A-Chr15 f 0.389 0.162   9 0.0539 0.416 0.2, 0.7 -0.15
B6.A-Chr15 m 0.486 0.234   7 0.0884 0.482 0.2, 0.8 0.72
B6.A-Chr16 f 0.313 0.113   8 0.0398 0.36 0.2, 0.5 -0.69
B6.A-Chr16 m 0.375 0.175   8 0.062 0.467 0.1, 0.7 -0.13
B6.A-Chr17 f 0.525 0.149   8 0.0526 0.283 0.4, 0.7 0.81
B6.A-Chr17 m 0.4 0.185   8 0.0655 0.463 0.1, 0.6 0.06
B6.A-Chr18 f 0.337 0.106   8 0.0375 0.314 0.2, 0.5 -0.52
B6.A-Chr18 m 0.487 0.21   8 0.0743 0.431 0.2, 0.7 0.73
B6.A-Chr19 f 0.388 0.189   8 0.0666 0.486 0.2, 0.7 -0.16
B6.A-Chr19 m 0.357 0.0976   7 0.0369 0.273 0.2, 0.5 -0.27
B6.A-Chr2 f 0.543 0.237   7 0.0896 0.437 0.3, 0.9 0.94
B6.A-Chr2 m 0.35 0.0756   8 0.0267 0.216 0.3, 0.5 -0.32
B6.A-Chr3 f 0.538 0.32   8 0.113 0.596 0.2, 1.1 0.91
B6.A-Chr3 m 0.387 0.125   8 0.0441 0.322 0.2, 0.6 -0.04
B6.A-Chr4 f 0.25 0.107   8 0.0378 0.428 0.1, 0.4 -1.14
B6.A-Chr4 m 0.186 0.09   7 0.034 0.484 0.1, 0.3 -1.57
B6.A-Chr5 f 0.412 0.181   8 0.0639 0.438 0.2, 0.7 0.01
B6.A-Chr5 m 0.35 0.0926   8 0.0327 0.265 0.2, 0.5 -0.32
B6.A-Chr6 f 0.562 0.169   8 0.0596 0.3 0.4, 0.8 1.08
B6.A-Chr6 m 0.537 0.342   8 0.121 0.636 0.1, 1.2 1.11
B6.A-Chr7 f 0.25 0.0926   8 0.0327 0.37 0.1, 0.4 -1.14
B6.A-Chr7 m 0.75 0.239   8 0.0845 0.319 0.5, 1.2 2.74
B6.A-Chr8 f 0.325 0.149   8 0.0526 0.458 0.1, 0.6 -0.61
B6.A-Chr8 m 0.475 0.122   12 0.0351 0.256 0.3, 0.7 0.64
B6.A-Chr9 f 0.6 0.22   8 0.0779 0.367 0.3, 0.9 1.35
B6.A-Chr9 m 0.487 0.217   8 0.0766 0.445 0.3, 0.9 0.73
B6.A-ChrX f 0.238 0.106   8 0.0375 0.447 0.1, 0.4 -1.23
B6.A-ChrX m 0.275 0.0707   8 0.025 0.257 0.2, 0.4 -0.89
B6.A-ChrY f 0.4 0.153   7 0.0577 0.382 0.2, 0.6 -0.08
B6.A-ChrY m 0.312 0.146   8 0.0515 0.466 0.1, 0.5 -0.61
C57BL/6J f 0.375 0.116   8 0.0412 0.311 0.2, 0.5 -0.25
C57BL/6J m 0.35 0.151   8 0.0535 0.432 0.2, 0.6 -0.32


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 0.1375 0.0593 0.2541 0.0209
A/J m 0.1125 0.0593 0.2291 0.0
B6.A-Chr1 f 0.6 0.0593 0.7166 0.4834
B6.A-Chr1 m 0.525 0.0593 0.6416 0.4084
B6.A-Chr10 f 0.3 0.0634 0.4247 0.1753
B6.A-Chr10 m 0.4125 0.0593 0.5291 0.2959
B6.A-Chr11 f 0.65 0.0593 0.7666 0.5334
B6.A-Chr11 m 0.35 0.0593 0.4666 0.2334
B6.A-Chr12 f 0.6 0.0593 0.7166 0.4834
B6.A-Chr12 m 0.4625 0.0593 0.5791 0.3459
B6.A-Chr13 f 0.325 0.0593 0.4416 0.2084
B6.A-Chr13 m 0.325 0.0593 0.4416 0.2084
B6.A-Chr14 f 0.3875 0.0593 0.5041 0.2709
B6.A-Chr14 m 0.2625 0.0593 0.3791 0.1459
B6.A-Chr15 f 0.3889 0.0559 0.4988 0.279
B6.A-Chr15 m 0.4857 0.0634 0.6104 0.3611
B6.A-Chr16 f 0.3125 0.0593 0.4291 0.1959
B6.A-Chr16 m 0.375 0.0593 0.4916 0.2584
B6.A-Chr17 f 0.525 0.0593 0.6416 0.4084
B6.A-Chr17 m 0.4 0.0593 0.5166 0.2834
B6.A-Chr18 f 0.3375 0.0593 0.4541 0.2209
B6.A-Chr18 m 0.4875 0.0593 0.6041 0.3709
B6.A-Chr19 f 0.3875 0.0593 0.5041 0.2709
B6.A-Chr19 m 0.3571 0.0634 0.4818 0.2325
B6.A-Chr2 f 0.5429 0.0634 0.6675 0.4182
B6.A-Chr2 m 0.35 0.0593 0.4666 0.2334
B6.A-Chr3 f 0.5375 0.0593 0.6541 0.4209
B6.A-Chr3 m 0.3875 0.0593 0.5041 0.2709
B6.A-Chr4 f 0.25 0.0593 0.3666 0.1334
B6.A-Chr4 m 0.1857 0.0634 0.3104 0.0611
B6.A-Chr5 f 0.4125 0.0593 0.5291 0.2959
B6.A-Chr5 m 0.35 0.0593 0.4666 0.2334
B6.A-Chr6 f 0.5625 0.0593 0.6791 0.4459
B6.A-Chr6 m 0.5375 0.0593 0.6541 0.4209
B6.A-Chr7 f 0.25 0.0593 0.3666 0.1334
B6.A-Chr7 m 0.75 0.0593 0.8666 0.6334
B6.A-Chr8 f 0.325 0.0593 0.4416 0.2084
B6.A-Chr8 m 0.475 0.0484 0.5702 0.3798
B6.A-Chr9 f 0.6 0.0593 0.7166 0.4834
B6.A-Chr9 m 0.4875 0.0593 0.6041 0.3709
B6.A-ChrX f 0.2375 0.0593 0.3541 0.1209
B6.A-ChrX m 0.275 0.0593 0.3916 0.1584
B6.A-ChrY f 0.4 0.0634 0.5247 0.2753
B6.A-ChrY m 0.3125 0.0593 0.4291 0.1959
C57BL/6J f 0.375 0.0593 0.4916 0.2584
C57BL/6J m 0.35 0.0593 0.4666 0.2334


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 0.125 0.0419 0.2074 0.0426
B6.A-Chr1 both 0.5625 0.0419 0.6449 0.4801
B6.A-Chr10 both 0.3562 0.0434 0.4416 0.2709
B6.A-Chr11 both 0.5 0.0419 0.5824 0.4176
B6.A-Chr12 both 0.5313 0.0419 0.6137 0.4488
B6.A-Chr13 both 0.325 0.0419 0.4074 0.2426
B6.A-Chr14 both 0.325 0.0419 0.4074 0.2426
B6.A-Chr15 both 0.4373 0.0422 0.5204 0.3542
B6.A-Chr16 both 0.3438 0.0419 0.4262 0.2613
B6.A-Chr17 both 0.4625 0.0419 0.5449 0.3801
B6.A-Chr18 both 0.4125 0.0419 0.4949 0.3301
B6.A-Chr19 both 0.3723 0.0434 0.4577 0.287
B6.A-Chr2 both 0.4464 0.0434 0.5318 0.3611
B6.A-Chr3 both 0.4625 0.0419 0.5449 0.3801
B6.A-Chr4 both 0.2179 0.0434 0.3032 0.1325
B6.A-Chr5 both 0.3813 0.0419 0.4637 0.2988
B6.A-Chr6 both 0.55 0.0419 0.6324 0.4676
B6.A-Chr7 both 0.5 0.0419 0.5824 0.4176
B6.A-Chr8 both 0.4 0.0383 0.4753 0.3247
B6.A-Chr9 both 0.5438 0.0419 0.6262 0.4613
B6.A-ChrX both 0.2562 0.0419 0.3387 0.1738
B6.A-ChrY both 0.3562 0.0434 0.4416 0.2709
C57BL/6J both 0.3625 0.0419 0.4449 0.2801




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA