Phenotype measure:   Lake1   pct_NEUT

ID, description, units MPD:19903   pct_NEUT   neutrophil differential (NEUT; percentage of total WBC)   [%]
Data set, strains Lake1   B6.A consomic w/par   23 strains     sex: both     age: 7wks
Procedure complete blood count
Ontology mappings

  STRAIN COMPARISON PLOT
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Lake1 - neutrophil differential (NEUT; percentage of total WBC)



  MEASURE SUMMARY
Measure Summary FemaleMale
Number of strains tested23 strains23 strains
Mean of the strain means7.06   % 8.24   %
Median of the strain means6.70   % 7.35   %
SD of the strain means± 1.70 ± 2.26
Coefficient of variation (CV)0.240 0.274
Min–max range of strain means5.30   –   13.3   % 5.04   –   12.9   %
Mean sample size per strain7.9   mice 7.9   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
sex 1 114.0519 114.0519 25.3872 < 0.0001
strain 22 1099.5705 49.9805 11.1253 < 0.0001
sex:strain 22 289.8411 13.1746 2.9326 < 0.0001
Residuals 321 1442.0893 4.4925


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
Strain Sex Mean SD N mice SEM CV Min, Max Z score
A/J f 13.3 3.74   8 1.32 0.281 8.6, 19.6 3.68
A/J m 12.9 2.1   8 0.741 0.162 10.7, 16.8 2.06
B6.A-Chr1 f 9.19 1.37   8 0.486 0.15 7.8, 10.9 1.25
B6.A-Chr1 m 9.79 1.4   8 0.497 0.144 7.6, 11.6 0.69
B6.A-Chr10 f 7.07 1.7   7 0.641 0.24 4.8, 10.2 0.0
B6.A-Chr10 m 6.81 1.5   8 0.531 0.221 5.3, 10.0 -0.63
B6.A-Chr11 f 5.95 0.441   8 0.156 0.0741 5.2, 6.6 -0.66
B6.A-Chr11 m 7.35 1.2   8 0.424 0.163 5.3, 8.6 -0.39
B6.A-Chr12 f 6.81 1.75   8 0.618 0.256 4.6, 10.5 -0.15
B6.A-Chr12 m 9.86 1.9   8 0.671 0.192 7.1, 13.3 0.72
B6.A-Chr13 f 6.19 1.88   8 0.664 0.304 4.7, 10.5 -0.52
B6.A-Chr13 m 12.2 5.53   8 1.96 0.452 5.3, 22.3 1.75
B6.A-Chr14 f 6.38 1.26   8 0.446 0.198 4.4, 8.4 -0.4
B6.A-Chr14 m 6.21 1.17   8 0.413 0.188 4.3, 7.8 -0.9
B6.A-Chr15 f 6.77 1.02   9 0.34 0.151 5.6, 8.4 -0.17
B6.A-Chr15 m 9.67 1.62   7 0.612 0.167 7.5, 12.4 0.63
B6.A-Chr16 f 6.86 1.16   8 0.411 0.17 4.8, 8.4 -0.12
B6.A-Chr16 m 6.34 1.63   8 0.578 0.258 4.8, 9.7 -0.84
B6.A-Chr17 f 5.72 1.27   8 0.448 0.221 3.4, 7.4 -0.79
B6.A-Chr17 m 9.25 1.87   8 0.66 0.202 5.2, 11.5 0.45
B6.A-Chr18 f 6.32 1.22   8 0.433 0.194 4.9, 8.3 -0.44
B6.A-Chr18 m 7.05 1.09   8 0.387 0.155 5.3, 8.2 -0.53
B6.A-Chr19 f 5.81 0.494   8 0.175 0.085 5.1, 6.4 -0.74
B6.A-Chr19 m 7.13 1.23   7 0.465 0.173 5.5, 9.1 -0.49
B6.A-Chr2 f 6.7 1.06   7 0.402 0.159 5.2, 7.7 -0.22
B6.A-Chr2 m 8.89 1.93   8 0.682 0.217 7.0, 12.0 0.29
B6.A-Chr3 f 7.12 2.4   8 0.85 0.337 4.3, 12.3 0.03
B6.A-Chr3 m 8.36 2.58   8 0.912 0.309 5.9, 12.9 0.05
B6.A-Chr4 f 8.97 1.23   8 0.433 0.137 6.9, 11.4 1.12
B6.A-Chr4 m 12.9 5.41   7 2.05 0.419 8.9, 23.3 2.06
B6.A-Chr5 f 6.81 1.75   8 0.619 0.257 4.6, 9.3 -0.15
B6.A-Chr5 m 6.39 1.46   8 0.515 0.228 4.3, 8.7 -0.82
B6.A-Chr6 f 8.99 0.876   8 0.31 0.0974 7.8, 10.1 1.14
B6.A-Chr6 m 9.15 4.38   8 1.55 0.479 4.9, 17.6 0.4
B6.A-Chr7 f 6.21 0.985   8 0.348 0.159 4.6, 7.5 -0.5
B6.A-Chr7 m 8.94 2.65   8 0.937 0.297 6.2, 13.4 0.31
B6.A-Chr8 f 6.04 1.35   8 0.477 0.224 4.2, 8.5 -0.6
B6.A-Chr8 m 7.07 2.34   12 0.674 0.331 5.0, 11.6 -0.52
B6.A-Chr9 f 7.06 2.48   8 0.878 0.352 4.2, 12.1 0.0
B6.A-Chr9 m 5.5 2.33   8 0.824 0.424 0.8, 8.8 -1.21
B6.A-ChrX f 6.23 0.908   8 0.321 0.146 4.9, 7.6 -0.49
B6.A-ChrX m 5.87 1.41   8 0.499 0.24 4.3, 8.8 -1.05
B6.A-ChrY f 5.3 1.07   7 0.403 0.201 3.6, 6.8 -1.04
B6.A-ChrY m 5.04 1.15   8 0.407 0.229 3.2, 6.4 -1.42
C57BL/6J f 6.69 3.42   8 1.21 0.511 4.4, 14.9 -0.22
C57BL/6J m 6.88 1.06   8 0.376 0.155 5.5, 8.1 -0.6


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
A/J f 13.3375 0.7494 14.8118 11.8632
A/J m 12.9125 0.7494 14.3868 11.4382
B6.A-Chr1 f 9.1875 0.7494 10.6618 7.7132
B6.A-Chr1 m 9.7875 0.7494 11.2618 8.3132
B6.A-Chr10 f 7.0714 0.8011 8.6475 5.4953
B6.A-Chr10 m 6.8125 0.7494 8.2868 5.3382
B6.A-Chr11 f 5.95 0.7494 7.4243 4.4757
B6.A-Chr11 m 7.35 0.7494 8.8243 5.8757
B6.A-Chr12 f 6.8125 0.7494 8.2868 5.3382
B6.A-Chr12 m 9.8625 0.7494 11.3368 8.3882
B6.A-Chr13 f 6.1875 0.7494 7.6618 4.7132
B6.A-Chr13 m 12.25 0.7494 13.7243 10.7757
B6.A-Chr14 f 6.375 0.7494 7.8493 4.9007
B6.A-Chr14 m 6.2125 0.7494 7.6868 4.7382
B6.A-Chr15 f 6.7667 0.7065 8.1567 5.3767
B6.A-Chr15 m 9.6714 0.8011 11.2475 8.0953
B6.A-Chr16 f 6.8625 0.7494 8.3368 5.3882
B6.A-Chr16 m 6.3375 0.7494 7.8118 4.8632
B6.A-Chr17 f 5.725 0.7494 7.1993 4.2507
B6.A-Chr17 m 9.25 0.7494 10.7243 7.7757
B6.A-Chr18 f 6.325 0.7494 7.7993 4.8507
B6.A-Chr18 m 7.05 0.7494 8.5243 5.5757
B6.A-Chr19 f 5.8125 0.7494 7.2868 4.3382
B6.A-Chr19 m 7.1286 0.8011 8.7047 5.5525
B6.A-Chr2 f 6.7 0.8011 8.2761 5.1239
B6.A-Chr2 m 8.8875 0.7494 10.3618 7.4132
B6.A-Chr3 f 7.125 0.7494 8.5993 5.6507
B6.A-Chr3 m 8.3625 0.7494 9.8368 6.8882
B6.A-Chr4 f 8.975 0.7494 10.4493 7.5007
B6.A-Chr4 m 12.9143 0.8011 14.4904 11.3382
B6.A-Chr5 f 6.8125 0.7494 8.2868 5.3382
B6.A-Chr5 m 6.3875 0.7494 7.8618 4.9132
B6.A-Chr6 f 8.9875 0.7494 10.4618 7.5132
B6.A-Chr6 m 9.15 0.7494 10.6243 7.6757
B6.A-Chr7 f 6.2125 0.7494 7.6868 4.7382
B6.A-Chr7 m 8.9375 0.7494 10.4118 7.4632
B6.A-Chr8 f 6.0375 0.7494 7.5118 4.5632
B6.A-Chr8 m 7.0667 0.6119 8.2704 5.8629
B6.A-Chr9 f 7.0625 0.7494 8.5368 5.5882
B6.A-Chr9 m 5.5 0.7494 6.9743 4.0257
B6.A-ChrX f 6.225 0.7494 7.6993 4.7507
B6.A-ChrX m 5.875 0.7494 7.3493 4.4007
B6.A-ChrY f 5.3 0.8011 6.8761 3.7239
B6.A-ChrY m 5.0375 0.7494 6.5118 3.5632
C57BL/6J f 6.6875 0.7494 8.1618 5.2132
C57BL/6J m 6.875 0.7494 8.3493 5.4007


  LEAST SQUARES MEANS (MODEL-ADJUSTED), SEXES COMBINED
Strain Sex Mean SEM UpperCL LowerCL
A/J both 13.125 0.5299 14.1675 12.0825
B6.A-Chr1 both 9.4875 0.5299 10.53 8.445
B6.A-Chr10 both 6.942 0.5485 8.021 5.8629
B6.A-Chr11 both 6.65 0.5299 7.6925 5.6075
B6.A-Chr12 both 8.3375 0.5299 9.38 7.295
B6.A-Chr13 both 9.2187 0.5299 10.2612 8.1763
B6.A-Chr14 both 6.2937 0.5299 7.3362 5.2513
B6.A-Chr15 both 8.219 0.5341 9.2698 7.1683
B6.A-Chr16 both 6.6 0.5299 7.6425 5.5575
B6.A-Chr17 both 7.4875 0.5299 8.53 6.445
B6.A-Chr18 both 6.6875 0.5299 7.73 5.645
B6.A-Chr19 both 6.4705 0.5485 7.5496 5.3915
B6.A-Chr2 both 7.7938 0.5485 8.8728 6.7147
B6.A-Chr3 both 7.7438 0.5299 8.7862 6.7013
B6.A-Chr4 both 10.9446 0.5485 12.0237 9.8656
B6.A-Chr5 both 6.6 0.5299 7.6425 5.5575
B6.A-Chr6 both 9.0688 0.5299 10.1112 8.0263
B6.A-Chr7 both 7.575 0.5299 8.6175 6.5325
B6.A-Chr8 both 6.5521 0.4837 7.5037 5.6004
B6.A-Chr9 both 6.2813 0.5299 7.3237 5.2388
B6.A-ChrX both 6.05 0.5299 7.0925 5.0075
B6.A-ChrY both 5.1688 0.5485 6.2478 4.0897
C57BL/6J both 6.7812 0.5299 7.8237 5.7388




GWAS analysis not available: Strain panel must be either Inbred, HMDP, BXD, BXH, CXB, or AXB/BXA