Project measure / variable:   Threadgill1   liver_necrosis_ctrl

ID, description, units MPD:19404   liver_necrosis_ctrl   necrosis   [%]  control  
acetaminophen study
Data set, strains Threadgill1   inbred w/CC7   37 strains     sex: m     age: 8-17wks
Procedure histopathology
Ontology mappings

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  STRAIN COMPARISON PLOT
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Threadgill1 - necrosis control



  MEASURE SUMMARY
Measure Summary Male
Number of strains tested37 strains
Mean of the strain means0.351   %
Median of the strain means0   %
SD of the strain means± 1.70
Coefficient of variation (CV)4.85
Min–max range of strain means0   –   10.0   %
Mean sample size per strain2.1   mice


  ANOVA, Q-Q NORMALITY ASSESSMENT
ANOVA summary      
FactorDFSum of squaresMean sum of squaresF valuep value (Pr>F)
strain 35 209.2208 5.9777 1.1243 0.357
Residuals 41 218.0 5.3171


Q-Q normality assessment based on residuals

  


  STRAIN MEANS (UNADJUSTED)
  
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Strain Sex Mean SD N mice SEM CV Min, Max Z score
129S1/SvImJ m 0.0 0.0   2   0.0 0.0 -0.21
A/J m 0.0 0.0   2   0.0 0.0 -0.21
AKR/J m 0.0 0.0   2   0.0 0.0 -0.21
B6C3F1/J m 0.0 0.0   2   0.0 0.0 -0.21
BALB/cByJ m 0.0 0.0   2   0.0 0.0 -0.21
BTBR T+ Itpr3tf/J m 0.0 0.0   2   0.0 0.0 -0.21
BUB/BnJ m 0.0 0.0   3 0.0 0.0 -0.21
C3H/HeJ m 0.0 0.0   2   0.0 0.0 -0.21
C57BL/10J m 0.0 0.0   2   0.0 0.0 -0.21
C57BL/6J m 0.0 0.0   2   0.0 0.0 -0.21
C57BLKS/J m 0.0 0.0   2   0.0 0.0 -0.21
C57BR/cdJ m 0.0 0.0   2   0.0 0.0 -0.21
C57L/J m 0.0 0.0   2   0.0 0.0 -0.21
CAST/EiJ m 0.0 0.0   1   0.0 0.0 -0.21
CBA/J m 0.0 0.0   2   0.0 0.0 -0.21
CZECHII/EiJ m 0.0 0.0   3 0.0 0.0 -0.21
DBA/2J m 0.0 0.0   2   0.0 0.0 -0.21
FVB/NJ m 0.0 0.0   2   0.0 0.0 -0.21
JF1/MsJ m 0.0 0.0   2   0.0 0.0 -0.21
KK/HlJ m 0.0 0.0   2   0.0 0.0 -0.21
LP/J m 0.0 0.0   3 0.0 0.0 -0.21
MA/MyJ m 0.0 0.0   2   0.0 0.0 -0.21
MSM/MsJ m 0.0 0.0   2   0.0 0.0 -0.21
NOD/ShiLtJ m 0.0 0.0   2   0.0 0.0 -0.21
NON/ShiLtJ m 0.0 0.0   2   0.0 0.0 -0.21
NZO/HlLtJ m 0.0 0.0   2   0.0 0.0 -0.21
NZW/LacJ m 10.0 14.1   2   10.0 1.41 5.67
PERA/EiJ m 0.0 0.0   3 0.0 0.0 -0.21
P/J m 0.0 0.0   2   0.0 0.0 -0.21
PL/J m 0.0 0.0   2   0.0 0.0 -0.21
PWD/PhJ m 0.0 0.0   2   0.0 0.0 -0.21
RIIIS/J m 0.0 0.0   2   0.0 0.0 -0.21
SEA/GnJ m 0.0 0.0   2   0.0 0.0 -0.21
SJL/J m 0.0 0.0   2   0.0 0.0 -0.21
SM/J m 0.0 0.0   2   0.0 0.0 -0.21
SWR/J m 0.0 0.0   3 0.0 0.0 -0.21
WSB/EiJ m 3.0 4.24   2   3.0 1.41 1.56


  LEAST SQUARES MEANS (MODEL-ADJUSTED)
Strain Sex Mean SEM UpperCL LowerCL
129S1/SvImJ m 0.0 1.6305 3.2929 -3.2929
A/J m 0.0 1.6305 3.2929 -3.2929
AKR/J m 0.0 1.6305 3.2929 -3.2929
B6C3F1/J m 0.0 1.6305 3.2929 -3.2929
BALB/cByJ m 0.0 1.6305 3.2929 -3.2929
BTBR T+ Itpr3tf/J m 0.0 1.6305 3.2929 -3.2929
BUB/BnJ m 0.0 1.3313 2.6886 -2.6886
C3H/HeJ m 0.0 1.6305 3.2929 -3.2929
C57BL/10J m 0.0 1.6305 3.2929 -3.2929
C57BL/6J m 0.0 1.6305 3.2929 -3.2929
C57BLKS/J m 0.0 1.6305 3.2929 -3.2929
C57BR/cdJ m 0.0 1.6305 3.2929 -3.2929
C57L/J m 0.0 1.6305 3.2929 -3.2929
CBA/J m 0.0 1.6305 3.2929 -3.2929
CZECHII/EiJ m 0.0 1.3313 2.6886 -2.6886
DBA/2J m 0.0 1.6305 3.2929 -3.2929
FVB/NJ m 0.0 1.6305 3.2929 -3.2929
JF1/MsJ m 0.0 1.6305 3.2929 -3.2929
KK/HlJ m 0.0 1.6305 3.2929 -3.2929
LP/J m 0.0 1.3313 2.6886 -2.6886
MA/MyJ m 0.0 1.6305 3.2929 -3.2929
MSM/MsJ m 0.0 1.6305 3.2929 -3.2929
NOD/ShiLtJ m 0.0 1.6305 3.2929 -3.2929
NON/ShiLtJ m 0.0 1.6305 3.2929 -3.2929
NZO/HlLtJ m 0.0 1.6305 3.2929 -3.2929
NZW/LacJ m 10.0 1.6305 13.2929 6.7071
PERA/EiJ m 0.0 1.3313 2.6886 -2.6886
P/J m 0.0 1.6305 3.2929 -3.2929
PL/J m 0.0 1.6305 3.2929 -3.2929
PWD/PhJ m 0.0 1.6305 3.2929 -3.2929
RIIIS/J m 0.0 1.6305 3.2929 -3.2929
SEA/GnJ m 0.0 1.6305 3.2929 -3.2929
SJL/J m 0.0 1.6305 3.2929 -3.2929
SM/J m 0.0 1.6305 3.2929 -3.2929
SWR/J m 0.0 1.3313 2.6886 -2.6886
WSB/EiJ m 3.0 1.6305 6.2929 -0.2929




  GWAS USING LINEAR MIXED MODELS